Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001520

Physical Location & Seq

Genomic Coordinates Reverse (-)

11026960 .. 11029777

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00170620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCGACTGCATCTGCTTCATCTTCCCGAACCAGAACCCGGTCCAGCGGACCAGTTCTTCGCTCTCTTTCACCCTCTGGAAGGTTCTACACCGGCTCTTCCAATGCCTCAATCCAATCCACCGCTTCGGCTTTCGCCTCCTCCACCAGCTCCAGCTTCTCGTCTCGGTCGTCCGCCTTTTTCAACAACCACCAGGACCACCACAGCCACTACCACCACACCGACTACCACCACCACCGTTCGGCTTCACCGACGCGTGTCAATCTCTACACCTCCAGTGCTCTGTCACCAGCTGTCCGCTTCTCCATAGAGCACCGCTCCATCTCCCCGAACCGATCCATCACCACTTCCAAGAAGAACGGCCCAATCGCGGCGGCCAGGAAGACGTGTATGTGCTCGCCGACGAATCATCCAGGCTCGTTTCGCTGCAGTCTTCACAAGAATCAAGGAAGTGCGAATCATCACAACCACAACCAGACGCCGTATCCCAACAACAGGCTGAACATGCGCAGATCTGCCATGACGAACTCGCTGGTTCGAATCAGCGGCGTCGAGGGCGAGTGGGTGAAGAGAGCCTTGACGGCTCTGATTCGTCCTTCTTCGCACCAGCAGAGGCGGAGAGCCGGGTTCCAGCCACGGCAGAGCAGACTCTCCGTCATGTCCAAGCCCGATGCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

24.91

Weight (kDa)

11.72

Isoelectric Point (pI)

73.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11090 AT5G25280 AT5G25280 AT5G25280
fragaria_vesca	FvH4_1g01930 FvH4_6g29080 FvH4_6g29090
malus_domestica	MD00G1046800.v1.1 MD08G1152900.v1.1 MD13G1239000.v1.1 MD15G1129600.v1.1 MD15G1161800.v1.1 MD17G1218000.v1.1
prunus_persica	Prupe.1G485100_v2.0.a1 Prupe.1G485100_v2.0.a1 Prupe.3G093600_v2.0.a1 Prupe.7G256900_v2.0.a1 Prupe.7G256900_v2.0.a1
pyrus_communis	pycom02g01570 pycom08g13180 pycom15g11680 pycom15g14540 pycom17g22230
rosa_chinensis	RchiOBHm_Chr2g0086961 RchiOBHm_Chr2g0134271 RchiOBHm_Chr6g0297351
rosa_laevigata	RLG00000011609 RLG00000015818 RLG00000019383
rosa_multiflora	Rmu_co8148184.1_g000001 Rmu_co8308813.1_g000001 Rmu_sc0000418.1_g000003 Rmu_sc0004535.1_g000011 Rmu_sc0009060.1_g000002 Rmu_sc0030045.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110390 Rroxscaffold_7G00170620
rosa_rugosa	Rorug01G0065600 Rorug01G0471100 Rorug02G0315800 Rorug06G0270800
rosa_samantha	Rh2AG023700 Rh2AG368400 Rh2BG374400 Rh2CG352100 Rh2DG024400 Rh2DG391700 Rh6DG382300
rosa_wichuraiana	Rw2G001870 Rw2G030020 Rw6G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	509
AccBSI	CCGCTC	1 cut(s)	318
AccII	CGCG	2 cut(s)	256, 371
AciI	CCGC	9 cut(s)	48, 123, 174, 298, 316, 371, 374, 546, 616
AclWI	GGATC	1 cut(s)	330
AcoI	YGGCCR	1 cut(s)	375
AcyI	GRCGYC	2 cut(s)	479, 549
AfiI	CCNNNNNNNGG	5 cut(s)	39, 81, 241, 370, 495
AflIII	ACRYGT	2 cut(s)	254, 386
AgsI	TTSAA	1 cut(s)	184
AhdI	GACNNNNNGTC	1 cut(s)	653
AjiI	CACGTC	1 cut(s)	387
AjnI	CCWGG	3 cut(s)	192, 377, 412
AluBI	AGCT	3 cut(s)	150, 156, 293
AluI	AGCT	3 cut(s)	150, 156, 293
Alw21I	GWGCWC	3 cut(s)	283, 315, 398
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	1 cut(s)	330
AoxI	GGCC	2 cut(s)	361, 375
ApeKI	GCWGC	1 cut(s)	426
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	4 cut(s)	42, 50, 196, 362
AsuC2I	CCSGG	2 cut(s)	40, 625
AsuHPI	GGTGA	5 cut(s)	63, 240, 279, 334, 577
AsuII	TTCGAA	1 cut(s)	538
AvaII	GGWCC	3 cut(s)	42, 50, 196
BbsI	GAAGAC	2 cut(s)	389, 425
Bbv12I	GWGCWC	3 cut(s)	283, 315, 398
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	2 cut(s)	329, 347
BceAI	ACGGC	4 cut(s)	376, 466, 597, 653
BciT130I	CCWGG	3 cut(s)	194, 379, 414
BciVI	GTATCC	1 cut(s)	495
BcnI	CCSGG	2 cut(s)	40, 625
BcoDI	GTCTC	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	427
BfuI	GTATCC	1 cut(s)	495
BglI	GCCNNNNNGGC	1 cut(s)	581
BglII	AGATCT	1 cut(s)	512
BisI	GCNGC	4 cut(s)	372, 375, 427, 547
BlsI	GCNGC	4 cut(s)	373, 376, 428, 548
Bme1390I	CCNGG	5 cut(s)	40, 194, 379, 414, 625
Bme18I	GGWCC	3 cut(s)	42, 50, 196
BmeRI	GACNNNNNGTC	1 cut(s)	653
BmgBI	CACGTC	1 cut(s)	387
BmgT120I	GGNCC	4 cut(s)	42, 50, 196, 362
BmiI	GGNNCC	1 cut(s)	629
BmrFI	CCNGG	5 cut(s)	40, 194, 379, 414, 625
BmsI	GCATC	2 cut(s)	20, 661
BoxI	GACNNNNGTC	1 cut(s)	257
BpiI	GAAGAC	2 cut(s)	389, 425
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
BpmI	CTGGAG	2 cut(s)	136, 259
Bpu14I	TTCGAA	1 cut(s)	538
BpuMI	CCSGG	2 cut(s)	40, 625
BsaHI	GRCGYC	2 cut(s)	479, 549
BsaJI	CCNNGG	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	5 cut(s)	39, 81, 241, 370, 495
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	53, 276
BseBI	CCWGG	3 cut(s)	194, 379, 414
BseDI	CCNNGG	1 cut(s)	635
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	5 cut(s)	39, 81, 241, 370, 495
BseMII	CTCAG	1 cut(s)	666
BseNI	ACTGG	2 cut(s)	53, 276
BseRI	GAGGAG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	413
Bsh1236I	CGCG	2 cut(s)	256, 371
Bsh1285I	CGRYCG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	363, 377
BsiEI	CGRYCG	1 cut(s)	170
BsiHKAI	GWGCWC	3 cut(s)	283, 315, 398
BsiSI	CCGG	3 cut(s)	40, 93, 624
BslI	CCNNNNNNNGG	5 cut(s)	39, 81, 241, 370, 495
BsmAI	GTCTC	1 cut(s)	168
BsmBI	CGTCTC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	363, 377
Bsp119I	TTCGAA	1 cut(s)	538
Bsp1286I	GDGCHC	3 cut(s)	283, 315, 398
Bsp143I	GATC	2 cut(s)	335, 512
BspACI	CCGC	9 cut(s)	48, 123, 174, 298, 316, 371, 374, 546, 616
BspANI	GGCC	2 cut(s)	363, 377
BspCNI	CTCAG	1 cut(s)	667
BspFNI	CGCG	2 cut(s)	256, 371
BspLI	GGNNCC	1 cut(s)	629
BspMAI	CTGCAG	1 cut(s)	431
BspPI	GGATC	1 cut(s)	330
BspQI	GCTCTTC	1 cut(s)	103
BspT104I	TTCGAA	1 cut(s)	538
BsrBI	CCGCTC	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	53, 276
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	635
BssMI	GATC	2 cut(s)	335, 512
BssNI	GRCGYC	2 cut(s)	479, 549
Bst2UI	CCWGG	3 cut(s)	194, 379, 414
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	2 cut(s)	103, 563
BstACI	GRCGYC	2 cut(s)	479, 549
BstBI	TTCGAA	1 cut(s)	538
BstC8I	GCNNGC	1 cut(s)	398
BstDEI	CTNAG	1 cut(s)	675
BstDSI	CCRYGG	1 cut(s)	635
BstENI	CCTNNNNNAGG	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	2 cut(s)	256, 371
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	2 cut(s)	338, 515
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	2 cut(s)	335, 512
BstMCI	CGRYCG	1 cut(s)	170
BstMWI	GCNNNNNNNGC	4 cut(s)	423, 505, 555, 581
BstNI	CCWGG	3 cut(s)	194, 379, 414
BstNSI	RCATGY	1 cut(s)	508
BstPAI	GACNNNNGTC	1 cut(s)	257
BstSCI	CCNGG	5 cut(s)	38, 192, 377, 412, 623
BstSFI	CTRYAG	1 cut(s)	427
BstUI	CGCG	2 cut(s)	256, 371
BstV1I	GCAGC	1 cut(s)	413
BstV2I	GAAGAC	2 cut(s)	389, 425
BstX2I	RGATCY	1 cut(s)	512
BstYI	RGATCY	1 cut(s)	512
BsuI	GTATCC	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	363, 377
BtgI	CCRYGG	1 cut(s)	635
BtrI	CACGTC	1 cut(s)	387
BtsCI	GGATG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	398
CfoI	GCGC	1 cut(s)	510
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	4 cut(s)	42, 50, 196, 362
CseI	GACGC	3 cut(s)	262, 487, 538
CviAII	CATG	3 cut(s)	505, 520, 658
DdeI	CTNAG	1 cut(s)	675
DpnI	GATC	2 cut(s)	337, 514
DpnII	GATC	2 cut(s)	335, 512
DriI	GACNNNNNGTC	1 cut(s)	653
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	2 cut(s)	103, 563
Eam1105I	GACNNNNNGTC	1 cut(s)	653
EarI	CTCTTC	2 cut(s)	103, 563
EciI	GGCGGA	2 cut(s)	163, 631
Eco47I	GGWCC	3 cut(s)	42, 50, 196
EcoNI	CCTNNNNNAGG	1 cut(s)	79
EcoRII	CCWGG	3 cut(s)	192, 377, 412
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	3 cut(s)	508, 523, 661
FaiI	YATR	5 cut(s)	308, 392, 506, 521, 659
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FatI	CATG	3 cut(s)	504, 519, 657
Fnu4HI	GCNGC	4 cut(s)	372, 375, 427, 547
FokI	GGATG	1 cut(s)	396
Fsp4HI	GCNGC	4 cut(s)	372, 375, 427, 547
FspI	TGCGCA	1 cut(s)	509
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	4 cut(s)	372, 375, 427, 547
GsuI	CTGGAG	2 cut(s)	136, 259
HaeIII	GGCC	2 cut(s)	363, 377
HapII	CCGG	3 cut(s)	40, 93, 624
HgaI	GACGC	3 cut(s)	262, 487, 538
HhaI	GCGC	1 cut(s)	510
Hin1I	GRCGYC	2 cut(s)	479, 549
Hin1II	CATG	3 cut(s)	508, 523, 661
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HinfI	GANTC	6 cut(s)	406, 442, 457, 540, 589, 648
HpaII	CCGG	3 cut(s)	40, 93, 624
HphI	GGTGA	5 cut(s)	63, 240, 279, 334, 577
Hpy188I	TCNGA	1 cut(s)	588
Hpy188III	TCNNGA	2 cut(s)	27, 78
Hpy99I	CGWCG	3 cut(s)	256, 406, 554
HpyAV	CCTTC	2 cut(s)	75, 606
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	2 cut(s)	11, 429
HpyF10VI	GCNNNNNNNGC	4 cut(s)	423, 505, 555, 581
HpyF3I	CTNAG	1 cut(s)	675
HpySE526I	ACGT	1 cut(s)	386
Hsp92I	GRCGYC	2 cut(s)	479, 549
Hsp92II	CATG	3 cut(s)	508, 523, 661
HspAI	GCGC	1 cut(s)	508
Kzo9I	GATC	2 cut(s)	335, 512
LguI	GCTCTTC	1 cut(s)	103
LmnI	GCTCC	2 cut(s)	155, 323
Lsp1109I	GCAGC	1 cut(s)	413
LweI	GCATC	2 cut(s)	20, 661
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	2 cut(s)	337, 514
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	2 cut(s)	335, 512
MboII	GAAGA	8 cut(s)	15, 50, 90, 367, 394, 425, 580, 591
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	3 cut(s)	283, 315, 398
MluI	ACGCGT	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	642
MnlI	CCTC	7 cut(s)	85, 118, 148, 151, 283, 547, 606
MspA1I	CMGCKG	3 cut(s)	48, 293, 546
MspI	CCGG	3 cut(s)	40, 93, 624
MspR9I	CCNGG	5 cut(s)	40, 194, 379, 414, 625
MvaI	CCWGG	3 cut(s)	194, 379, 414
MvnI	CGCG	2 cut(s)	256, 371
MwoI	GCNNNNNNNGC	4 cut(s)	423, 505, 555, 581
NciI	CCSGG	2 cut(s)	40, 625
NdeII	GATC	2 cut(s)	335, 512
NlaIII	CATG	3 cut(s)	508, 523, 661
NlaIV	GGNNCC	1 cut(s)	629
NmuCI	GTSAC	1 cut(s)	285
NsbI	TGCGCA	1 cut(s)	509
NspI	RCATGY	1 cut(s)	508
NspV	TTCGAA	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	2 cut(s)	167, 248
PfeI	GAWTC	5 cut(s)	406, 442, 457, 540, 589
PkrI	GCNGC	4 cut(s)	373, 376, 428, 548
PleI	GAGTC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	642
PshAI	GACNNNNGTC	1 cut(s)	257
Psp6I	CCWGG	3 cut(s)	192, 377, 412
PspGI	CCWGG	3 cut(s)	192, 377, 412
PspN4I	GGNNCC	1 cut(s)	629
PspPI	GGNCC	4 cut(s)	42, 50, 196, 362
PstI	CTGCAG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	512
PvuII	CAGCTG	1 cut(s)	293
SapI	GCTCTTC	1 cut(s)	103
SatI	GCNGC	4 cut(s)	372, 375, 427, 547
Sau3AI	GATC	2 cut(s)	335, 512
Sau96I	GGNCC	4 cut(s)	42, 50, 196, 362
SchI	GAGTC	1 cut(s)	642
ScrFI	CCNGG	5 cut(s)	40, 194, 379, 414, 625
SduI	GDGCHC	3 cut(s)	283, 315, 398
SetI	ASST	6 cut(s)	86, 152, 158, 275, 295, 389
SfaNI	GCATC	2 cut(s)	20, 661
SfcI	CTRYAG	1 cut(s)	427
SfuI	TTCGAA	1 cut(s)	538
SinI	GGWCC	3 cut(s)	42, 50, 196
SsiI	CCGC	9 cut(s)	48, 123, 174, 298, 316, 371, 374, 546, 616
StyD4I	CCNGG	5 cut(s)	38, 192, 377, 412, 623
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	2 cut(s)	538, 552
TaqII	GACCGA	1 cut(s)	156
TauI	GCSGC	3 cut(s)	374, 377, 549
TfiI	GAWTC	5 cut(s)	406, 442, 457, 540, 589
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	1 cut(s)	426
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	1 cut(s)	9
TspGWI	ACGGA	1 cut(s)	643
TspRI	CASTG	1 cut(s)	283
VpaK11BI	GGWCC	3 cut(s)	42, 50, 196
XagI	CCTNNNNNAGG	1 cut(s)	79
XceI	RCATGY	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.