Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001520

Physical Location & Seq

Genomic Coordinates Reverse (-)

26497934 .. 26498506

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1218000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCACAAGCATCGCAAATCGCAGCCGTTCTTTTCCTCTTCGTCATCGGGCTTCGCGTCGTCCACCTCCTCGAGCTTCTCCTCCGGGTCGTCGACGTTCTTCTCGCGCTCCGCCTCCCCCACGCGCATCTCCATGTACGCCCACTCTCCTTCCCCGCCGTCATCGTCGTCGTCCGTACGATTCGCGAACCGCCCCGGCTCTCCCGGCCGTTCGATTTCCGTGAAGAATCAATTACCCACCAGGAAGAACAATAACAGCAACAGCGGCGACGGCAAGAGAACGTGCCTGTGTTCCCCTACGACGCACCCTGGCTCGTTCCGGTGCGCCCTGCACAAGAACTCGCCACGTGCCGGCCAAAGTTCGTCGTATCACTCGAGTATCAGCCTGAACTACAGAAGGTCGGCGATGAAAAATTCGCTGGTTCGAATCGGAGGAGTGGAAGGCGATTTAGTGAAGAGGGCTTTGTCGGCTCTGATCAGGCCGTCGTCGCACAGCCAGCGCCGCCGGGTCGATTTTCAGCCCAAGCCGAGCCGGCTCTCCGCAATGTCCAAAGCCTCCGACGACGACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.47

Weight (kDa)

11.59

Isoelectric Point (pI)

86.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11090 AT5G25280 AT5G25280 AT5G25280
fragaria_vesca	FvH4_1g01930 FvH4_6g29080 FvH4_6g29090
malus_domestica	MD00G1046800.v1.1 MD08G1152900.v1.1 MD13G1239000.v1.1 MD15G1129600.v1.1 MD15G1161800.v1.1 MD17G1218000.v1.1
prunus_persica	Prupe.1G485100_v2.0.a1 Prupe.1G485100_v2.0.a1 Prupe.3G093600_v2.0.a1 Prupe.7G256900_v2.0.a1 Prupe.7G256900_v2.0.a1
pyrus_communis	pycom02g01570 pycom08g13180 pycom15g11680 pycom15g14540 pycom17g22230
rosa_chinensis	RchiOBHm_Chr2g0086961 RchiOBHm_Chr2g0134271 RchiOBHm_Chr6g0297351
rosa_laevigata	RLG00000011609 RLG00000015818 RLG00000019383
rosa_multiflora	Rmu_co8148184.1_g000001 Rmu_co8308813.1_g000001 Rmu_sc0000418.1_g000003 Rmu_sc0004535.1_g000011 Rmu_sc0009060.1_g000002 Rmu_sc0030045.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110390 Rroxscaffold_7G00170620
rosa_rugosa	Rorug01G0065600 Rorug01G0471100 Rorug02G0315800 Rorug06G0270800
rosa_samantha	Rh2AG023700 Rh2AG368400 Rh2BG374400 Rh2CG352100 Rh2DG024400 Rh2DG391700 Rh6DG382300
rosa_wichuraiana	Rw2G001870 Rw2G030020 Rw6G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	92
AccII	CGCG	4 cut(s)	56, 106, 124, 185
AciI	CCGC	6 cut(s)	111, 155, 190, 264, 502, 540
AcoI	YGGCCR	2 cut(s)	205, 352
AcsI	RAATTY	1 cut(s)	412
AcvI	CACGTG	1 cut(s)	347
AfaI	GTAC	2 cut(s)	137, 177
AfiI	CCNNNNNNNGG	1 cut(s)	350
AjnI	CCWGG	2 cut(s)	239, 307
AluBI	AGCT	1 cut(s)	75
AluI	AGCT	1 cut(s)	75
Ama87I	CYCGRG	2 cut(s)	70, 373
AoxI	GGCC	3 cut(s)	205, 352, 479
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	412
AspLEI	GCGC	4 cut(s)	108, 126, 326, 501
AsuC2I	CCSGG	4 cut(s)	85, 195, 204, 506
AsuII	TTCGAA	1 cut(s)	424
AvaI	CYCGRG	2 cut(s)	70, 373
BaeI	ACNNNNGTAYC	2 cut(s)	361, 394
BbrPI	CACGTG	1 cut(s)	347
BbvI	GCAGC	1 cut(s)	34
BceAI	ACGGC	5 cut(s)	10, 142, 192, 286, 466
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciT130I	CCWGG	2 cut(s)	241, 309
BclI	TGATCA	1 cut(s)	474
BcnI	CCSGG	4 cut(s)	85, 195, 204, 506
BfmI	CTRYAG	1 cut(s)	391
BfoI	RGCGCY	1 cut(s)	502
BglI	GCCNNNNNGGC	1 cut(s)	532
BisI	GCNGC	3 cut(s)	23, 265, 502
BlsI	GCNGC	3 cut(s)	24, 266, 503
Bme1390I	CCNGG	6 cut(s)	85, 195, 204, 241, 309, 506
BmeT110I	CYCGRG	2 cut(s)	70, 373
BmrFI	CCNGG	6 cut(s)	85, 195, 204, 241, 309, 506
BmsI	GCATC	2 cut(s)	19, 135
Bpu14I	TTCGAA	1 cut(s)	424
BpuMI	CCSGG	4 cut(s)	85, 195, 204, 506
BsaAI	YACGTR	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	193, 307
BsaWI	WCCGGW	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse118I	RCCGGY	2 cut(s)	350, 531
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	241, 309
BseDI	CCNNGG	2 cut(s)	193, 307
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMI	GCAATG	1 cut(s)	549
BseRI	GAGGAG	3 cut(s)	58, 70, 447
BseX3I	CGGCCG	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	314
Bsh1236I	CGCG	4 cut(s)	56, 106, 124, 185
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	3 cut(s)	207, 354, 481
BsiEI	CGRYCG	1 cut(s)	208
BsiHKCI	CYCGRG	2 cut(s)	70, 373
BsiSI	CCGG	7 cut(s)	84, 195, 204, 319, 351, 505, 532
BsiWI	CGTACG	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	350
BsnI	GGCC	3 cut(s)	207, 354, 481
BsoBI	CYCGRG	2 cut(s)	70, 373
Bsp119I	TTCGAA	1 cut(s)	424
Bsp143I	GATC	1 cut(s)	474
Bsp68I	TCGCGA	1 cut(s)	185
BspACI	CCGC	6 cut(s)	111, 155, 190, 264, 502, 540
BspANI	GGCC	3 cut(s)	207, 354, 481
BspFNI	CGCG	4 cut(s)	56, 106, 124, 185
BspT104I	TTCGAA	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	549
BsrFI	RCCGGY	2 cut(s)	350, 531
BssAI	RCCGGY	2 cut(s)	350, 531
BssECI	CCNNGG	2 cut(s)	193, 307
BssMI	GATC	1 cut(s)	474
Bst2UI	CCWGG	2 cut(s)	241, 309
Bst6I	CTCTTC	2 cut(s)	43, 449
BstBAI	YACGTR	1 cut(s)	347
BstBI	TTCGAA	1 cut(s)	424
BstC8I	GCNNGC	3 cut(s)	352, 497, 533
BstFNI	CGCG	4 cut(s)	56, 106, 124, 185
BstH2I	RGCGCY	1 cut(s)	502
BstHHI	GCGC	4 cut(s)	108, 126, 326, 501
BstKTI	GATC	1 cut(s)	477
BstMBI	GATC	1 cut(s)	474
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	8 cut(s)	204, 264, 270, 467, 487, 496, 501, 532
BstNI	CCWGG	2 cut(s)	241, 309
BstSCI	CCNGG	6 cut(s)	83, 193, 202, 239, 307, 504
BstSFI	CTRYAG	1 cut(s)	391
BstUI	CGCG	4 cut(s)	56, 106, 124, 185
BstV1I	GCAGC	1 cut(s)	34
BstZI	CGGCCG	1 cut(s)	205
BsuRI	GGCC	3 cut(s)	207, 354, 481
BtgZI	GCGATG	1 cut(s)	419
BtuMI	TCGCGA	1 cut(s)	185
Cac8I	GCNNGC	3 cut(s)	352, 497, 533
CfoI	GCGC	4 cut(s)	108, 126, 326, 501
Cfr10I	RCCGGY	2 cut(s)	350, 531
CseI	GACGC	2 cut(s)	45, 310
Csp6I	GTAC	2 cut(s)	136, 176
CviAII	CATG	1 cut(s)	133
CviQI	GTAC	2 cut(s)	136, 176
DpnI	GATC	1 cut(s)	476
DpnII	GATC	1 cut(s)	474
EaeI	YGGCCR	2 cut(s)	205, 352
EagI	CGGCCG	1 cut(s)	205
Eam1104I	CTCTTC	2 cut(s)	43, 449
EarI	CTCTTC	2 cut(s)	43, 449
EciI	GGCGGA	1 cut(s)	100
EclXI	CGGCCG	1 cut(s)	205
Eco52I	CGGCCG	1 cut(s)	205
Eco72I	CACGTG	1 cut(s)	347
Eco88I	CYCGRG	2 cut(s)	70, 373
EcoRII	CCWGG	2 cut(s)	239, 307
FaeI	CATG	1 cut(s)	136
FaiI	YATR	1 cut(s)	134
FatI	CATG	1 cut(s)	132
FauI	CCCGC	1 cut(s)	162
FbaI	TGATCA	1 cut(s)	474
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	3 cut(s)	23, 265, 502
Fsp4HI	GCNGC	3 cut(s)	23, 265, 502
GlaI	GCGC	4 cut(s)	107, 125, 325, 500
GluI	GCNGC	3 cut(s)	23, 265, 502
HaeII	RGCGCY	1 cut(s)	502
HaeIII	GGCC	3 cut(s)	207, 354, 481
HapII	CCGG	7 cut(s)	84, 195, 204, 319, 351, 505, 532
HgaI	GACGC	2 cut(s)	45, 310
HhaI	GCGC	4 cut(s)	108, 126, 326, 501
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	4 cut(s)	106, 124, 324, 499
HinP1I	GCGC	4 cut(s)	106, 124, 324, 499
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HinfI	GANTC	3 cut(s)	180, 226, 426
HpaII	CCGG	7 cut(s)	84, 195, 204, 319, 351, 505, 532
Hpy166II	GTNNAC	2 cut(s)	63, 93
Hpy188I	TCNGA	3 cut(s)	431, 474, 559
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	2 cut(s)	63, 93
HpyAV	CCTTC	3 cut(s)	159, 390, 434
HpyCH4IV	ACGT	4 cut(s)	95, 281, 346, 567
HpyCH4V	TGCA	2 cut(s)	4, 331
HpyF10VI	GCNNNNNNNGC	8 cut(s)	204, 264, 270, 467, 487, 496, 501, 532
HpySE526I	ACGT	4 cut(s)	95, 281, 346, 567
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	4 cut(s)	106, 124, 324, 499
KroI	GCCGGC	2 cut(s)	350, 531
KroNI	GCCGGC	2 cut(s)	352, 533
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	1 cut(s)	474
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	2 cut(s)	19, 135
MaeII	ACGT	4 cut(s)	95, 281, 346, 567
MalI	GATC	1 cut(s)	476
MboI	GATC	1 cut(s)	474
MboII	GAAGA	5 cut(s)	30, 91, 235, 256, 466
MluCI	AATT	2 cut(s)	230, 412
MnlI	CCTC	8 cut(s)	46, 76, 79, 91, 124, 425, 450, 565
MroNI	GCCGGC	2 cut(s)	350, 531
MseI	TTAA	1 cut(s)	571
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	7 cut(s)	84, 195, 204, 319, 351, 505, 532
MspR9I	CCNGG	6 cut(s)	85, 195, 204, 241, 309, 506
MvaI	CCWGG	2 cut(s)	241, 309
MvnI	CGCG	4 cut(s)	56, 106, 124, 185
MwoI	GCNNNNNNNGC	8 cut(s)	204, 264, 270, 467, 487, 496, 501, 532
NaeI	GCCGGC	2 cut(s)	352, 533
NciI	CCSGG	4 cut(s)	85, 195, 204, 506
NdeII	GATC	1 cut(s)	474
NgoMIV	GCCGGC	2 cut(s)	350, 531
NlaIII	CATG	1 cut(s)	136
NmeAIII	GCCGAG	1 cut(s)	552
NruI	TCGCGA	1 cut(s)	185
NspV	TTCGAA	1 cut(s)	424
PaeR7I	CTCGAG	2 cut(s)	70, 373
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 371
PdiI	GCCGGC	2 cut(s)	352, 533
PfeI	GAWTC	3 cut(s)	180, 226, 426
Pfl23II	CGTACG	1 cut(s)	175
PkrI	GCNGC	3 cut(s)	24, 266, 503
PmaCI	CACGTG	1 cut(s)	347
PmlI	CACGTG	1 cut(s)	347
Ppu21I	YACGTR	1 cut(s)	347
Psp6I	CCWGG	2 cut(s)	239, 307
PspCI	CACGTG	1 cut(s)	347
PspGI	CCWGG	2 cut(s)	239, 307
PspLI	CGTACG	1 cut(s)	175
PspXI	VCTCGAGB	2 cut(s)	70, 373
RruI	TCGCGA	1 cut(s)	185
RsaI	GTAC	2 cut(s)	137, 177
RsaNI	GTAC	2 cut(s)	136, 176
RseI	CAYNNNNRTG	1 cut(s)	131
SalI	GTCGAC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	571
SatI	GCNGC	3 cut(s)	23, 265, 502
Sau3AI	GATC	1 cut(s)	474
ScrFI	CCNGG	6 cut(s)	85, 195, 204, 241, 309, 506
SetI	ASST	7 cut(s)	68, 77, 98, 284, 349, 401, 570
SfaNI	GCATC	2 cut(s)	19, 135
SfcI	CTRYAG	1 cut(s)	391
Sfr274I	CTCGAG	2 cut(s)	70, 373
SfuI	TTCGAA	1 cut(s)	424
SgrDI	CGTCGACG	1 cut(s)	91
SlaI	CTCGAG	2 cut(s)	70, 373
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	70, 373
SmoI	CTYRAG	2 cut(s)	70, 373
Sse9I	AATT	2 cut(s)	230, 412
SsiI	CCGC	6 cut(s)	111, 155, 190, 264, 502, 540
StyD4I	CCNGG	6 cut(s)	83, 193, 202, 239, 307, 504
TaiI	ACGT	4 cut(s)	98, 284, 349, 570
TaqI	TCGA	6 cut(s)	71, 92, 212, 374, 424, 510
TasI	AATT	2 cut(s)	230, 412
TauI	GCSGC	2 cut(s)	267, 504
TfiI	GAWTC	3 cut(s)	180, 226, 426
Tru1I	TTAA	1 cut(s)	571
Tru9I	TTAA	1 cut(s)	571
TseI	GCWGC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	422
TspGWI	ACGGA	2 cut(s)	163, 208
XapI	RAATTY	1 cut(s)	412
XhoI	CTCGAG	2 cut(s)	70, 373
XmiI	GTMKAC	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.