Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001520

Physical Location & Seq

Genomic Coordinates Reverse (-)

9380355 .. 9382036

Gene Structure 1682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1129600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCGACCGCATCCTATTCATCGAGAGCGAGAACCCGGTCCAATGGAAGCGGACCGGTGCTCCGCTCGCTCTCGCCTTCTGGGAGGTTCTACGCAGCTTCCAATGGATCCGCATCAGGTTTCGCTTCTTCGACAAGCTCCAGCTTCTCGTCTCCGGCTTCCACCTTCTTCCAACACCACCAGGACCACCACTACTACAATCAGCAGATCCACAATAACCACCACCACCACCACCGATCAGCGTCTCCGACGCGTGTCAATCTCTATACCTCCTCCTCTCCGTCTCCGTCCGTCCGATTCTCCATCGACCACCGATCCATCTCTCCCAACCATCATTCGAACCGATCCATCGCCGTTTCGAAGAAAAGCGGCCCGATTTCGATGCCGAAGAAGACCTGTATGTGCTCGCCGACGTCGCATCCGGGATCGTTTCGCTGCAGCCTCCACAAGAACCAGGGAGGGAGTCAAAACACCGGATCTTTCCCGTCGAACAGGTTGAATATGCGCAGATCCGCTATGACGAACTCGCTGGTTCGAATCGGTGGAGTCGAAGGCGAGTGGGTGAAGCGTGCCTTGACCGCCCTGATTCGGCCTTGCGCTCACCAGCAGCGGCGGAGAGCTGGGTTTCAGCCGCGGCCGAGCCGGCTCTCCGTCATGTCCACCGCCCACGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

24.54

Weight (kDa)

11.69

Isoelectric Point (pI)

73.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11090 AT5G25280 AT5G25280 AT5G25280
fragaria_vesca	FvH4_1g01930 FvH4_6g29080 FvH4_6g29090
malus_domestica	MD00G1046800.v1.1 MD08G1152900.v1.1 MD13G1239000.v1.1 MD15G1129600.v1.1 MD15G1161800.v1.1 MD17G1218000.v1.1
prunus_persica	Prupe.1G485100_v2.0.a1 Prupe.1G485100_v2.0.a1 Prupe.3G093600_v2.0.a1 Prupe.7G256900_v2.0.a1 Prupe.7G256900_v2.0.a1
pyrus_communis	pycom02g01570 pycom08g13180 pycom15g11680 pycom15g14540 pycom17g22230
rosa_chinensis	RchiOBHm_Chr2g0086961 RchiOBHm_Chr2g0134271 RchiOBHm_Chr6g0297351
rosa_laevigata	RLG00000011609 RLG00000015818 RLG00000019383
rosa_multiflora	Rmu_co8148184.1_g000001 Rmu_co8308813.1_g000001 Rmu_sc0000418.1_g000003 Rmu_sc0004535.1_g000011 Rmu_sc0009060.1_g000002 Rmu_sc0030045.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110390 Rroxscaffold_7G00170620
rosa_rugosa	Rorug01G0065600 Rorug01G0471100 Rorug02G0315800 Rorug06G0270800
rosa_samantha	Rh2AG023700 Rh2AG368400 Rh2BG374400 Rh2CG352100 Rh2DG024400 Rh2DG391700 Rh6DG382300
rosa_wichuraiana	Rw2G001870 Rw2G030020 Rw6G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	416
Acc16I	TGCGCA	1 cut(s)	506
AccBSI	CCGCTC	1 cut(s)	66
AccII	CGCG	2 cut(s)	253, 634
AclWI	GGATC	8 cut(s)	102, 115, 202, 309, 339, 433, 484, 504
AcoI	YGGCCR	1 cut(s)	635
AcyI	GRCGYC	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	588
AflIII	ACRYGT	1 cut(s)	251
AgeI	ACCGGT	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	499
AjnI	CCWGG	2 cut(s)	180, 453
AluBI	AGCT	4 cut(s)	98, 138, 144, 620
AluI	AGCT	4 cut(s)	98, 138, 144, 620
Alw21I	GWGCWC	2 cut(s)	63, 407
Alw26I	GTCTC	3 cut(s)	156, 249, 288
AlwI	GGATC	8 cut(s)	102, 115, 202, 309, 339, 433, 484, 504
AoxI	GGCC	3 cut(s)	370, 590, 635
ApeKI	GCWGC	4 cut(s)	95, 435, 438, 607
AsiGI	ACCGGT	1 cut(s)	55
AspLEI	GCGC	2 cut(s)	507, 599
AspS9I	GGNCC	4 cut(s)	39, 53, 184, 371
AsuC2I	CCSGG	2 cut(s)	37, 423
AsuHPI	GGTGA	2 cut(s)	574, 593
AsuII	TTCGAA	3 cut(s)	338, 359, 535
AvaII	GGWCC	3 cut(s)	39, 53, 184
BamHI	GGATCC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	398
Bbv12I	GWGCWC	2 cut(s)	63, 407
BbvI	GCAGC	4 cut(s)	107, 422, 450, 619
BccI	CCATC	4 cut(s)	311, 326, 339, 356
BceAI	ACGGC	1 cut(s)	338
BcgI	CGANNNNNNTGC	2 cut(s)	364, 398
BciT130I	CCWGG	2 cut(s)	182, 455
BcnI	CCSGG	2 cut(s)	37, 423
BcoDI	GTCTC	3 cut(s)	156, 249, 288
BfaI	CTAG	1 cut(s)	673
BfmI	CTRYAG	1 cut(s)	436
BglI	GCCNNNNNGGC	1 cut(s)	643
BisI	GCNGC	8 cut(s)	96, 370, 436, 439, 608, 611, 632, 635
BlsI	GCNGC	8 cut(s)	97, 371, 437, 440, 609, 612, 633, 636
Bme1390I	CCNGG	4 cut(s)	37, 182, 423, 455
Bme18I	GGWCC	3 cut(s)	39, 53, 184
BmgT120I	GGNCC	4 cut(s)	39, 53, 184, 371
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	4 cut(s)	37, 182, 423, 455
BmsI	GCATC	4 cut(s)	20, 122, 372, 427
BoxI	GACNNNNGTC	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	124
Bpu14I	TTCGAA	3 cut(s)	338, 359, 535
BpuMI	CCSGG	2 cut(s)	37, 423
BsaBI	GATNNNNATC	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	454, 632
BsaWI	WCCGGW	2 cut(s)	55, 473
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	588
Bse118I	RCCGGY	2 cut(s)	55, 642
Bse8I	GATNNNNATC	1 cut(s)	112
BseBI	CCWGG	2 cut(s)	182, 455
BseDI	CCNNGG	2 cut(s)	454, 632
BseGI	GGATG	2 cut(s)	11, 418
BseJI	GATNNNNATC	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	588
BseRI	GAGGAG	2 cut(s)	262, 265
BseX3I	CGGCCG	1 cut(s)	635
BseXI	GCAGC	4 cut(s)	107, 422, 450, 619
BseYI	CCCAGC	1 cut(s)	620
Bsh1236I	CGCG	2 cut(s)	253, 634
Bsh1285I	CGRYCG	2 cut(s)	9, 638
BshFI	GGCC	3 cut(s)	372, 592, 637
BshTI	ACCGGT	1 cut(s)	55
BsiEI	CGRYCG	2 cut(s)	9, 638
BsiHKAI	GWGCWC	2 cut(s)	63, 407
BsiSI	CCGG	6 cut(s)	37, 56, 155, 422, 474, 643
BslI	CCNNNNNNNGG	1 cut(s)	588
BsmAI	GTCTC	3 cut(s)	156, 249, 288
BsmBI	CGTCTC	3 cut(s)	156, 249, 288
BsnI	GGCC	3 cut(s)	372, 592, 637
Bsp119I	TTCGAA	3 cut(s)	338, 359, 535
Bsp1286I	GDGCHC	2 cut(s)	63, 407
Bsp143I	GATC	8 cut(s)	107, 207, 236, 314, 344, 425, 476, 509
BspANI	GGCC	3 cut(s)	372, 592, 637
BspFNI	CGCG	2 cut(s)	253, 634
BspLI	GGNNCC	1 cut(s)	109
BspMAI	CTGCAG	1 cut(s)	440
BspPI	GGATC	8 cut(s)	102, 115, 202, 309, 339, 433, 484, 504
BspT104I	TTCGAA	3 cut(s)	338, 359, 535
BsrBI	CCGCTC	1 cut(s)	66
BsrFI	RCCGGY	2 cut(s)	55, 642
BssAI	RCCGGY	2 cut(s)	55, 642
BssECI	CCNNGG	2 cut(s)	454, 632
BssMI	GATC	8 cut(s)	107, 207, 236, 314, 344, 425, 476, 509
BssNI	GRCGYC	1 cut(s)	413
Bst2UI	CCWGG	2 cut(s)	182, 455
BstACI	GRCGYC	1 cut(s)	413
BstBI	TTCGAA	3 cut(s)	338, 359, 535
BstC8I	GCNNGC	4 cut(s)	68, 407, 570, 644
BstDSI	CCRYGG	1 cut(s)	632
BstF5I	GGATG	2 cut(s)	11, 418
BstFNI	CGCG	2 cut(s)	253, 634
BstHHI	GCGC	2 cut(s)	507, 599
BstKTI	GATC	8 cut(s)	110, 210, 239, 317, 347, 428, 479, 512
BstMAI	GTCTC	3 cut(s)	156, 249, 288
BstMBI	GATC	8 cut(s)	107, 207, 236, 314, 344, 425, 476, 509
BstMCI	CGRYCG	2 cut(s)	9, 638
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 415, 578, 643
BstNI	CCWGG	2 cut(s)	182, 455
BstPAI	GACNNNNGTC	1 cut(s)	254
BstSCI	CCNGG	4 cut(s)	35, 180, 421, 453
BstSFI	CTRYAG	1 cut(s)	436
BstUI	CGCG	2 cut(s)	253, 634
BstV1I	GCAGC	4 cut(s)	107, 422, 450, 619
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	4 cut(s)	107, 207, 476, 509
BstYI	RGATCY	4 cut(s)	107, 207, 476, 509
BstZI	CGGCCG	1 cut(s)	635
BsuRI	GGCC	3 cut(s)	372, 592, 637
BtgI	CCRYGG	1 cut(s)	632
BtgZI	GCGATG	1 cut(s)	334
BtsCI	GGATG	2 cut(s)	11, 418
Cac8I	GCNNGC	4 cut(s)	68, 407, 570, 644
CfoI	GCGC	2 cut(s)	507, 599
Cfr10I	RCCGGY	2 cut(s)	55, 642
Cfr13I	GGNCC	4 cut(s)	39, 53, 184, 371
Cfr42I	CCGCGG	1 cut(s)	635
CpoI	CGGWCCG	1 cut(s)	53
CseI	GACGC	2 cut(s)	231, 259
CspAI	ACCGGT	1 cut(s)	55
CspI	CGGWCCG	1 cut(s)	53
CviAII	CATG	1 cut(s)	655
DpnI	GATC	8 cut(s)	109, 209, 238, 316, 346, 427, 478, 511
DpnII	GATC	8 cut(s)	107, 207, 236, 314, 344, 425, 476, 509
EaeI	YGGCCR	1 cut(s)	635
EagI	CGGCCG	1 cut(s)	635
EciI	GGCGGA	1 cut(s)	628
EclXI	CGGCCG	1 cut(s)	635
Eco47I	GGWCC	3 cut(s)	39, 53, 184
Eco52I	CGGCCG	1 cut(s)	635
EcoRII	CCWGG	2 cut(s)	180, 453
Esp3I	CGTCTC	3 cut(s)	156, 249, 288
FaeI	CATG	1 cut(s)	658
FaiI	YATR	5 cut(s)	267, 401, 503, 518, 656
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FatI	CATG	1 cut(s)	654
Fnu4HI	GCNGC	8 cut(s)	96, 370, 436, 439, 608, 611, 632, 635
FokI	GGATG	1 cut(s)	405
Fsp4HI	GCNGC	8 cut(s)	96, 370, 436, 439, 608, 611, 632, 635
FspBI	CTAG	1 cut(s)	673
FspI	TGCGCA	1 cut(s)	506
GlaI	GCGC	2 cut(s)	506, 598
GluI	GCNGC	8 cut(s)	96, 370, 436, 439, 608, 611, 632, 635
GsaI	CCCAGC	1 cut(s)	624
GsuI	CTGGAG	1 cut(s)	124
HaeIII	GGCC	3 cut(s)	372, 592, 637
HapII	CCGG	6 cut(s)	37, 56, 155, 422, 474, 643
HgaI	GACGC	2 cut(s)	231, 259
HhaI	GCGC	2 cut(s)	507, 599
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	1 cut(s)	658
Hin6I	GCGC	2 cut(s)	505, 597
HinP1I	GCGC	2 cut(s)	505, 597
HinfI	GANTC	5 cut(s)	297, 463, 537, 546, 586
HpaII	CCGG	6 cut(s)	37, 56, 155, 422, 474, 643
HphI	GGTGA	2 cut(s)	574, 593
Hpy166II	GTNNAC	1 cut(s)	660
Hpy188I	TCNGA	2 cut(s)	249, 296
Hpy188III	TCNNGA	1 cut(s)	24
Hpy8I	GTNNAC	1 cut(s)	660
Hpy99I	CGWCG	4 cut(s)	253, 415, 418, 490
HpyAV	CCTTC	3 cut(s)	87, 175, 545
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	1 cut(s)	438
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 415, 578, 643
HpySE526I	ACGT	1 cut(s)	413
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	1 cut(s)	658
HspAI	GCGC	2 cut(s)	505, 597
KroI	GCCGGC	1 cut(s)	642
KroNI	GCCGGC	1 cut(s)	644
KspI	CCGCGG	1 cut(s)	635
Kzo9I	GATC	8 cut(s)	107, 207, 236, 314, 344, 425, 476, 509
LmnI	GCTCC	2 cut(s)	66, 143
Lsp1109I	GCAGC	4 cut(s)	107, 422, 450, 619
LweI	GCATC	4 cut(s)	20, 122, 372, 427
MaeI	CTAG	1 cut(s)	673
MaeII	ACGT	1 cut(s)	413
MalI	GATC	8 cut(s)	109, 209, 238, 316, 346, 427, 478, 511
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	8 cut(s)	107, 207, 236, 314, 344, 425, 476, 509
MboII	GAAGA	5 cut(s)	120, 160, 373, 400, 403
MflI	RGATCY	4 cut(s)	107, 207, 476, 509
MhlI	GDGCHC	2 cut(s)	63, 407
MluI	ACGCGT	1 cut(s)	251
MlyI	GAGTC	2 cut(s)	472, 555
MmeI	TCCRAC	2 cut(s)	196, 272
MnlI	CCTC	6 cut(s)	78, 280, 283, 286, 452, 452
MroNI	GCCGGC	1 cut(s)	642
MspA1I	CMGCKG	2 cut(s)	610, 634
MspI	CCGG	6 cut(s)	37, 56, 155, 422, 474, 643
MspR9I	CCNGG	4 cut(s)	37, 182, 423, 455
MvaI	CCWGG	2 cut(s)	182, 455
MvnI	CGCG	2 cut(s)	253, 634
MwoI	GCNNNNNNNGC	4 cut(s)	67, 415, 578, 643
NaeI	GCCGGC	1 cut(s)	644
NciI	CCSGG	2 cut(s)	37, 423
NdeII	GATC	8 cut(s)	107, 207, 236, 314, 344, 425, 476, 509
NgoMIV	GCCGGC	1 cut(s)	642
NlaIII	CATG	1 cut(s)	658
NlaIV	GGNNCC	1 cut(s)	109
NmeAIII	GCCGAG	1 cut(s)	663
NsbI	TGCGCA	1 cut(s)	506
NspV	TTCGAA	3 cut(s)	338, 359, 535
PcsI	WCGNNNNNNNCGW	1 cut(s)	546
PdiI	GCCGGC	1 cut(s)	644
PfeI	GAWTC	3 cut(s)	297, 537, 586
PfoI	TCCNGGA	1 cut(s)	421
PinAI	ACCGGT	1 cut(s)	55
PkrI	GCNGC	8 cut(s)	97, 371, 437, 440, 609, 612, 633, 636
PleI	GAGTC	2 cut(s)	471, 554
PpsI	GAGTC	2 cut(s)	471, 554
PshAI	GACNNNNGTC	1 cut(s)	254
Psp6I	CCWGG	2 cut(s)	180, 453
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	2 cut(s)	180, 453
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	4 cut(s)	39, 53, 184, 371
PstI	CTGCAG	1 cut(s)	440
PsuI	RGATCY	4 cut(s)	107, 207, 476, 509
Rsr2I	CGGWCCG	1 cut(s)	53
RsrII	CGGWCCG	1 cut(s)	53
SacII	CCGCGG	1 cut(s)	635
SatI	GCNGC	8 cut(s)	96, 370, 436, 439, 608, 611, 632, 635
Sau3AI	GATC	8 cut(s)	107, 207, 236, 314, 344, 425, 476, 509
Sau96I	GGNCC	4 cut(s)	39, 53, 184, 371
SchI	GAGTC	2 cut(s)	472, 555
ScrFI	CCNGG	4 cut(s)	37, 182, 423, 455
SduI	GDGCHC	2 cut(s)	63, 407
SfaNI	GCATC	4 cut(s)	20, 122, 372, 427
SfcI	CTRYAG	1 cut(s)	436
Sfr303I	CCGCGG	1 cut(s)	635
SfuI	TTCGAA	3 cut(s)	338, 359, 535
SgrBI	CCGCGG	1 cut(s)	635
SinI	GGWCC	3 cut(s)	39, 53, 184
SspMI	CTAG	1 cut(s)	673
StyD4I	CCNGG	4 cut(s)	35, 180, 421, 453
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	9 cut(s)	23, 131, 306, 338, 359, 380, 488, 535, 549
TauI	GCSGC	4 cut(s)	372, 613, 634, 637
TfiI	GAWTC	3 cut(s)	297, 537, 586
TseI	GCWGC	4 cut(s)	95, 435, 438, 607
TspDTI	ATGAA	1 cut(s)	9
TspGWI	ACGGA	4 cut(s)	270, 276, 280, 640
VpaK11BI	GGWCC	3 cut(s)	39, 53, 184
XspI	CTAG	1 cut(s)	673
ZraI	GACGTC	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.