FvH4_6g29080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001520
Physical Location & Seq
Forward (+)
22438839 .. 22439885
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29080.t1

Sequence Viewer

Length: 618 bp
ATGGAGCCCTGTTACAAACCTCAACGGATCCTACCCCTATCAGACTATGGCTTCGCGTCCTCGACCTCATCCAAATTCTCCACCACTTCATCACAATTCTTGACTCGCCCCTCCTCCACGCGCCACCCCGTGCCCACCGTGCCCACTTCCACCTCCTCTGTCCGGCTCGACCGCCCGCCCAATCCCAGCTGTTCGATGACAATCAAGAAACCGTTCGCCGACGACGCCAAGAACCAAAGCAACGGCCAAAAGACCGGGAGAGCGGTTGCCGGCACCCAGAAAGCGTGCCTTTGTTCCCCTTCGACACACCCCGGCGCCTTCCGCTGCGCCATGCATAGGAACGCGCAGCGTGGCGGCGCTAGCCAATCGAAGTCGAGCAGCAAGACGACGTCGTCGTACCACTCGAGTATCAGGCTCAAATATCGGAGGGCGGCGATGAATAACTCGTTGGTGAGGATCGGAGGAGTGCTAGGTGAATTATTGGTGAAGCAAGCTTCGGCGGCTCTGATCAGACCCTCCGCTCACAACCGGAGGCGCAGAGCCGATTTTCAACCCAAGCCGAGCCGGCTCTCCGTCATGTCCAAAGCGGCGCCGGTTCCTGATTTCAGTCTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.17

Weight (kDa)

11.12

Isoelectric Point (pI)

62.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 391
AatII GACGTC 1 cut(s) 392
AccB1I GGYRCC 3 cut(s) 272, 314, 589
AccBSI CCGCTC 2 cut(s) 263, 521
AccII CGCG 3 cut(s) 56, 121, 344
AciI CCGC 9 cut(s) 172, 176, 263, 322, 354, 431, 500, 519, 587
AclWI GGATC 3 cut(s) 22, 35, 464
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 1 cut(s) 74
AcyI GRCGYC 4 cut(s) 225, 315, 389, 590
AdeI CACNNNGTG 1 cut(s) 130
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 2 cut(s) 162, 336
AgsI TTSAA 1 cut(s) 551
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 2 cut(s) 189, 494
AluI AGCT 2 cut(s) 189, 494
AlwI GGATC 3 cut(s) 22, 35, 464
Ama87I CYCGRG 1 cut(s) 403
AoxI GGCC 1 cut(s) 244
ApeKI GCWGC 3 cut(s) 324, 346, 378
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
Asp700I GAANNNNTTC 1 cut(s) 212
AspLEI GCGC 7 cut(s) 123, 317, 329, 346, 359, 537, 592
AsuC2I CCSGG 2 cut(s) 256, 312
AsuHPI GGTGA 3 cut(s) 463, 485, 496
AsuNHI GCTAGC 1 cut(s) 359
AvaI CYCGRG 1 cut(s) 403
BaeGI GKGCMC 2 cut(s) 135, 144
BaeI ACNNNNGTAYC 2 cut(s) 391, 424
BamHI GGATCC 1 cut(s) 27
BanI GGYRCC 3 cut(s) 272, 314, 589
BanII GRGCYC 1 cut(s) 9
BbvI GCAGC 3 cut(s) 311, 358, 390
BceAI ACGGC 1 cut(s) 259
BclI TGATCA 1 cut(s) 507
BcnI CCSGG 2 cut(s) 256, 312
BfaI CTAG 2 cut(s) 360, 470
BfoI RGCGCY 3 cut(s) 318, 360, 593
BglI GCCNNNNNGGC 1 cut(s) 565
BisI GCNGC 7 cut(s) 325, 347, 355, 379, 432, 501, 588
BlsI GCNGC 7 cut(s) 326, 348, 356, 380, 433, 502, 589
Bme1390I CCNGG 2 cut(s) 256, 312
BmeT110I CYCGRG 1 cut(s) 403
BmiI GGNNCC 6 cut(s) 6, 29, 274, 316, 591, 597
BmrFI CCNGG 2 cut(s) 256, 312
BmtI GCTAGC 1 cut(s) 363
BpuMI CCSGG 2 cut(s) 256, 312
BsaBI GATNNNNATC 1 cut(s) 200
BsaHI GRCGYC 4 cut(s) 225, 315, 389, 590
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 1 cut(s) 528
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 336
Bse118I RCCGGY 3 cut(s) 269, 564, 592
Bse8I GATNNNNATC 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 68
BseJI GATNNNNATC 1 cut(s) 200
BseLI CCNNNNNNNGG 2 cut(s) 162, 336
BseRI GAGGAG 3 cut(s) 103, 145, 477
BseSI GKGCMC 2 cut(s) 135, 144
BseXI GCAGC 3 cut(s) 311, 358, 390
BseYI CCCAGC 1 cut(s) 185
Bsh1236I CGCG 3 cut(s) 56, 121, 344
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 1 cut(s) 246
BshNI GGYRCC 3 cut(s) 272, 314, 589
BsiEI CGRYCG 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 403
BsiSI CCGG 7 cut(s) 163, 255, 270, 312, 529, 565, 593
BslI CCNNNNNNNGG 2 cut(s) 162, 336
BsnI GGCC 1 cut(s) 246
BsoBI CYCGRG 1 cut(s) 403
Bsp1286I GDGCHC 3 cut(s) 9, 135, 144
Bsp143I GATC 3 cut(s) 27, 456, 507
BspACI CCGC 9 cut(s) 172, 176, 263, 322, 354, 431, 500, 519, 587
BspANI GGCC 1 cut(s) 246
BspFNI CGCG 3 cut(s) 56, 121, 344
BspLI GGNNCC 6 cut(s) 6, 29, 274, 316, 591, 597
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 3 cut(s) 22, 35, 464
BspT107I GGYRCC 3 cut(s) 272, 314, 589
BsrBI CCGCTC 2 cut(s) 263, 521
BsrFI RCCGGY 3 cut(s) 269, 564, 592
BssAI RCCGGY 3 cut(s) 269, 564, 592
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 3 cut(s) 27, 456, 507
BssNI GRCGYC 4 cut(s) 225, 315, 389, 590
Bst4CI ACNGT 2 cut(s) 139, 213
BstACI GRCGYC 4 cut(s) 225, 315, 389, 590
BstC8I GCNNGC 6 cut(s) 176, 271, 286, 361, 492, 566
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 3 cut(s) 56, 121, 344
BstH2I RGCGCY 3 cut(s) 318, 360, 593
BstHHI GCGC 7 cut(s) 123, 317, 329, 346, 359, 537, 592
BstKTI GATC 3 cut(s) 30, 459, 510
BstMBI GATC 3 cut(s) 27, 456, 507
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 6 cut(s) 139, 224, 321, 360, 500, 565
BstSCI CCNGG 2 cut(s) 254, 310
BstSLI GKGCMC 2 cut(s) 135, 144
BstUI CGCG 3 cut(s) 56, 121, 344
BstV1I GCAGC 3 cut(s) 311, 358, 390
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BsuRI GGCC 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 449
BtsCI GGATG 1 cut(s) 68
Cac8I GCNNGC 6 cut(s) 176, 271, 286, 361, 492, 566
CfoI GCGC 7 cut(s) 123, 317, 329, 346, 359, 537, 592
Cfr10I RCCGGY 3 cut(s) 269, 564, 592
CseI GACGC 2 cut(s) 45, 233
Csp6I GTAC 1 cut(s) 397
CviAII CATG 2 cut(s) 331, 577
CviQI GTAC 1 cut(s) 397
DinI GGCGCC 2 cut(s) 316, 591
DpnI GATC 3 cut(s) 29, 458, 509
DpnII GATC 3 cut(s) 27, 456, 507
DraIII CACNNNGTG 1 cut(s) 130
DrdI GACNNNNNNGTC 1 cut(s) 391
DseDI GACNNNNNNGTC 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 403
EcoT22I ATGCAT 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 9
EgeI GGCGCC 2 cut(s) 316, 591
EheI GGCGCC 2 cut(s) 316, 591
FaeI CATG 2 cut(s) 334, 580
FaiI YATR 4 cut(s) 48, 332, 336, 578
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FatI CATG 2 cut(s) 330, 576
FauI CCCGC 1 cut(s) 183
FbaI TGATCA 1 cut(s) 507
Fnu4HI GCNGC 7 cut(s) 325, 347, 355, 379, 432, 501, 588
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 7 cut(s) 325, 347, 355, 379, 432, 501, 588
FspBI CTAG 2 cut(s) 360, 470
GlaI GCGC 7 cut(s) 122, 316, 328, 345, 358, 536, 591
GluI GCNGC 7 cut(s) 325, 347, 355, 379, 432, 501, 588
GsaI CCCAGC 1 cut(s) 189
HaeII RGCGCY 3 cut(s) 318, 360, 593
HaeIII GGCC 1 cut(s) 246
HapII CCGG 7 cut(s) 163, 255, 270, 312, 529, 565, 593
HgaI GACGC 2 cut(s) 45, 233
HhaI GCGC 7 cut(s) 123, 317, 329, 346, 359, 537, 592
Hin1I GRCGYC 4 cut(s) 225, 315, 389, 590
Hin1II CATG 2 cut(s) 334, 580
Hin6I GCGC 7 cut(s) 121, 315, 327, 344, 357, 535, 590
HinP1I GCGC 7 cut(s) 121, 315, 327, 344, 357, 535, 590
HindIII AAGCTT 1 cut(s) 492
HinfI GANTC 1 cut(s) 103
HpaII CCGG 7 cut(s) 163, 255, 270, 312, 529, 565, 593
HphI GGTGA 3 cut(s) 463, 485, 496
Hpy188I TCNGA 5 cut(s) 43, 426, 461, 507, 512
Hpy188III TCNNGA 3 cut(s) 100, 205, 599
Hpy99I CGWCG 5 cut(s) 224, 227, 391, 394, 397
HpyAV CCTTC 2 cut(s) 309, 328
HpyCH4III ACNGT 2 cut(s) 139, 213
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 1 cut(s) 334
HpyF10VI GCNNNNNNNGC 6 cut(s) 139, 224, 321, 360, 500, 565
HpySE526I ACGT 1 cut(s) 389
Hsp92I GRCGYC 4 cut(s) 225, 315, 389, 590
Hsp92II CATG 2 cut(s) 334, 580
HspAI GCGC 7 cut(s) 121, 315, 327, 344, 357, 535, 590
KasI GGCGCC 2 cut(s) 314, 589
KroI GCCGGC 2 cut(s) 269, 564
KroNI GCCGGC 2 cut(s) 271, 566
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 3 cut(s) 27, 456, 507
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 3 cut(s) 311, 358, 390
MaeI CTAG 2 cut(s) 360, 470
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 1 cut(s) 11
MalI GATC 3 cut(s) 29, 458, 509
MbiI CCGCTC 2 cut(s) 263, 521
MboI GATC 3 cut(s) 27, 456, 507
MflI RGATCY 1 cut(s) 27
MhlI GDGCHC 3 cut(s) 9, 135, 144
MluCI AATT 3 cut(s) 74, 95, 476
Mly113I GGCGCC 2 cut(s) 315, 590
MlyI GAGTC 1 cut(s) 97
Mph1103I ATGCAT 1 cut(s) 336
MroNI GCCGGC 2 cut(s) 269, 564
MroXI GAANNNNTTC 1 cut(s) 212
MseI TTAA 1 cut(s) 616
MspA1I CMGCKG 2 cut(s) 189, 324
MspI CCGG 7 cut(s) 163, 255, 270, 312, 529, 565, 593
MspR9I CCNGG 2 cut(s) 256, 312
MvnI CGCG 3 cut(s) 56, 121, 344
MwoI GCNNNNNNNGC 6 cut(s) 139, 224, 321, 360, 500, 565
NaeI GCCGGC 2 cut(s) 271, 566
NarI GGCGCC 2 cut(s) 315, 590
NciI CCSGG 2 cut(s) 256, 312
NdeII GATC 3 cut(s) 27, 456, 507
NgoMIV GCCGGC 2 cut(s) 269, 564
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 2 cut(s) 334, 580
NlaIV GGNNCC 6 cut(s) 6, 29, 274, 316, 591, 597
NmeAIII GCCGAG 1 cut(s) 585
NsiI ATGCAT 1 cut(s) 336
PaeR7I CTCGAG 1 cut(s) 403
PcsI WCGNNNNNNNCGW 2 cut(s) 392, 401
PdiI GCCGGC 2 cut(s) 271, 566
PdmI GAANNNNTTC 1 cut(s) 212
PflFI GACNNNGTC 2 cut(s) 388, 391
PkrI GCNGC 7 cut(s) 326, 348, 356, 380, 433, 502, 589
PleI GAGTC 1 cut(s) 97
PluTI GGCGCC 2 cut(s) 318, 593
PpsI GAGTC 1 cut(s) 97
PspFI CCCAGC 1 cut(s) 185
PspN4I GGNNCC 6 cut(s) 6, 29, 274, 316, 591, 597
PspXI VCTCGAGB 1 cut(s) 403
PsuI RGATCY 1 cut(s) 27
PsyI GACNNNGTC 2 cut(s) 388, 391
PvuII CAGCTG 1 cut(s) 189
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SaqAI TTAA 1 cut(s) 616
SatI GCNGC 7 cut(s) 325, 347, 355, 379, 432, 501, 588
Sau3AI GATC 3 cut(s) 27, 456, 507
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 2 cut(s) 256, 312
SduI GDGCHC 3 cut(s) 9, 135, 144
SetI ASST 7 cut(s) 22, 68, 155, 191, 392, 475, 496
SfoI GGCGCC 2 cut(s) 316, 591
Sfr274I CTCGAG 1 cut(s) 403
SlaI CTCGAG 1 cut(s) 403
SmlI CTYRAG 1 cut(s) 403
SmoI CTYRAG 1 cut(s) 403
Sse9I AATT 3 cut(s) 74, 95, 476
SsiI CCGC 9 cut(s) 172, 176, 263, 322, 354, 431, 500, 519, 587
SspDI GGCGCC 2 cut(s) 314, 589
SspMI CTAG 2 cut(s) 360, 470
StyD4I CCNGG 2 cut(s) 254, 310
TaaI ACNGT 2 cut(s) 139, 213
TaiI ACGT 1 cut(s) 392
TaqI TCGA 7 cut(s) 62, 168, 194, 302, 368, 374, 404
TasI AATT 3 cut(s) 74, 95, 476
TauI GCSGC 4 cut(s) 357, 434, 503, 590
Tru1I TTAA 1 cut(s) 616
Tru9I TTAA 1 cut(s) 616
TseI GCWGC 3 cut(s) 324, 346, 378
TspDTI ATGAA 2 cut(s) 78, 452
TspGWI ACGGA 2 cut(s) 40, 562
Tth111I GACNNNGTC 2 cut(s) 388, 391
XapI RAATTY 1 cut(s) 74
XhoI CTCGAG 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 212
XspI CTAG 2 cut(s) 360, 470
ZraI GACGTC 1 cut(s) 390
Zsp2I ATGCAT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.