RLG00000011609

Serine-rich protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001520
Physical Location & Seq
Reverse (-)
10985254 .. 10986702
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011609

Sequence Viewer

Length: 891 bp
ATGGCGACTGCATCTGCTTCGTCTTCCCGAACCAGAACCCGGTCCAGTGGACCAGTTCTTCGCTCTCTTTCACCCTCTGGAAGGTTCTACACCGGCTCTTCCAATGCCTCAATCCAATCCACCGCTTCGGCTTTCGCGTCCTCCACCAGCTCCAGCTTCTCGTCCCGGTCGTCCGCCTTTTTCAACAACCACCAGGATCACCACAGCCACTACCACCACACCGACTACCACCACCACCGTTCGGCTTCACCGACGCGTGTCAATCTCTACACCTCCAGTGCTCTGTCACCAGCTGTCCGCTTCTCCATCGAGCACCGCTCCATCTCCCCGAACCGATCCATCACCACTTCCAAGAAGAACGGCCCAATCGCGGCGGCCAGGAAGACGTGCATGTGCTCGCCGACGAATCATCCAGGCTCGTTTCGCTGCAGTCTTCACAAGAATCAAGGGAGTGCGAATCATCACAATCAAAACCAGACACCGTACCCCAACAACAGGCTGAACATGCGCAGATCTGCCATGACGAACTCGCTGGTTCGAATCAGCGGCGTCGAGGGCGAGTGGGTGAAGAGAGCCTTGACGGCGCTGATTCGTCCTTCTTCGCACCAGCAGAGGCGGAGAGCCGGGTTCCAGCCACGGCAGAGCAGACTCTCCGTCATGTCCAACCGTTCCATCCATTTGTGTTTGCAGCGTATGGGGTTCGTATTGTTCACCGTTTACCCGTTCACCGCCCCGTTCAGTTCAGTTCCGTCCCGTTCAGTGGTTGGTACCGATCACCGTCCCGTTCAGTTCCGTTGCGTGTGTTGCGTTCCGTTTACTCCGCCGTTTTGTTTAGCAGGTTGCGTTGGGTTTATGCCAGCTGGGTGCTCCGGTCGCAGGCATGATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

32.62

Weight (kDa)

11.49

Isoelectric Point (pI)

74.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 509
Acc36I ACCTGC 1 cut(s) 827
Acc65I GGTACC 1 cut(s) 767
AccB1I GGYRCC 1 cut(s) 767
AccBSI CCGCTC 1 cut(s) 318
AccII CGCG 3 cut(s) 137, 256, 371
AclWI GGATC 2 cut(s) 204, 330
AcoI YGGCCR 1 cut(s) 375
AcyI GRCGYC 1 cut(s) 549
AfaI GTAC 2 cut(s) 485, 769
AfiI CCNNNNNNNGG 7 cut(s) 39, 81, 241, 370, 495, 760, 876
AflIII ACRYGT 1 cut(s) 254
AgsI TTSAA 1 cut(s) 184
AhdI GACNNNNNGTC 1 cut(s) 653
AjiI CACGTC 1 cut(s) 387
AjnI CCWGG 3 cut(s) 192, 377, 412
AluBI AGCT 4 cut(s) 150, 156, 293, 860
AluI AGCT 4 cut(s) 150, 156, 293, 860
Alw21I GWGCWC 4 cut(s) 283, 315, 398, 869
AlwI GGATC 2 cut(s) 204, 330
AoxI GGCC 2 cut(s) 361, 375
ApeKI GCWGC 2 cut(s) 426, 688
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
Asp718I GGTACC 1 cut(s) 767
AspLEI GCGC 2 cut(s) 510, 586
AspS9I GGNCC 3 cut(s) 42, 50, 362
AsuC2I CCSGG 3 cut(s) 40, 166, 625
AsuHPI GGTGA 9 cut(s) 63, 191, 240, 279, 334, 577, 703, 718, 767
AsuII TTCGAA 1 cut(s) 538
AvaII GGWCC 2 cut(s) 42, 50
BanI GGYRCC 1 cut(s) 767
BbsI GAAGAC 3 cut(s) 15, 389, 425
Bbv12I GWGCWC 4 cut(s) 283, 315, 398, 869
BbvI GCAGC 2 cut(s) 413, 700
BccI CCATC 4 cut(s) 314, 329, 347, 680
BceAI ACGGC 4 cut(s) 376, 597, 653, 808
BcgI CGANNNNNNTGC 1 cut(s) 34
BciT130I CCWGG 3 cut(s) 194, 379, 414
BcnI CCSGG 3 cut(s) 40, 166, 625
BfmI CTRYAG 1 cut(s) 427
BfoI RGCGCY 1 cut(s) 587
BfuAI ACCTGC 1 cut(s) 827
BglI GCCNNNNNGGC 1 cut(s) 581
BglII AGATCT 1 cut(s) 512
BisI GCNGC 5 cut(s) 372, 375, 427, 547, 689
BlsI GCNGC 5 cut(s) 373, 376, 428, 548, 690
Bme1390I CCNGG 6 cut(s) 40, 166, 194, 379, 414, 625
Bme18I GGWCC 2 cut(s) 42, 50
BmeRI GACNNNNNGTC 1 cut(s) 653
BmgBI CACGTC 1 cut(s) 387
BmgT120I GGNCC 3 cut(s) 42, 50, 362
BmiI GGNNCC 2 cut(s) 629, 769
BmrFI CCNGG 6 cut(s) 40, 166, 194, 379, 414, 625
BmsI GCATC 1 cut(s) 20
BoxI GACNNNNGTC 1 cut(s) 257
BpiI GAAGAC 3 cut(s) 15, 389, 425
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BpmI CTGGAG 2 cut(s) 136, 259
Bpu14I TTCGAA 1 cut(s) 538
BpuMI CCSGG 3 cut(s) 40, 166, 625
BsaHI GRCGYC 1 cut(s) 549
BsaJI CCNNGG 1 cut(s) 635
BsaWI WCCGGW 1 cut(s) 869
Bsc4I CCNNNNNNNGG 7 cut(s) 39, 81, 241, 370, 495, 760, 876
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 3 cut(s) 45, 53, 276
BseBI CCWGG 3 cut(s) 194, 379, 414
BseDI CCNNGG 1 cut(s) 635
BseGI GGATG 2 cut(s) 409, 672
BseLI CCNNNNNNNGG 7 cut(s) 39, 81, 241, 370, 495, 760, 876
BseNI ACTGG 3 cut(s) 45, 53, 276
BseXI GCAGC 2 cut(s) 413, 700
BseYI CCCAGC 1 cut(s) 860
Bsh1236I CGCG 3 cut(s) 137, 256, 371
Bsh1285I CGRYCG 2 cut(s) 170, 874
BshFI GGCC 2 cut(s) 363, 377
BshNI GGYRCC 1 cut(s) 767
BsiEI CGRYCG 2 cut(s) 170, 874
BsiHKAI GWGCWC 4 cut(s) 283, 315, 398, 869
BsiSI CCGG 5 cut(s) 40, 93, 166, 624, 870
BslFI GGGAC 3 cut(s) 148, 736, 765
BslI CCNNNNNNNGG 7 cut(s) 39, 81, 241, 370, 495, 760, 876
BsmFI GGGAC 3 cut(s) 148, 736, 765
BsnI GGCC 2 cut(s) 363, 377
Bsp119I TTCGAA 1 cut(s) 538
Bsp1286I GDGCHC 4 cut(s) 283, 315, 398, 869
Bsp143I GATC 4 cut(s) 196, 335, 512, 772
BspANI GGCC 2 cut(s) 363, 377
BspFNI CGCG 3 cut(s) 137, 256, 371
BspLI GGNNCC 2 cut(s) 629, 769
BspMAI CTGCAG 1 cut(s) 431
BspMI ACCTGC 1 cut(s) 827
BspPI GGATC 2 cut(s) 204, 330
BspQI GCTCTTC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 538
BspT107I GGYRCC 1 cut(s) 767
BsrBI CCGCTC 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 3 cut(s) 45, 53, 276
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 635
BssMI GATC 4 cut(s) 196, 335, 512, 772
BssNI GRCGYC 1 cut(s) 549
Bst2UI CCWGG 3 cut(s) 194, 379, 414
Bst4CI ACNGT 5 cut(s) 239, 483, 668, 715, 779
Bst6I CTCTTC 2 cut(s) 103, 563
BstACI GRCGYC 1 cut(s) 549
BstBI TTCGAA 1 cut(s) 538
BstC8I GCNNGC 3 cut(s) 398, 858, 878
BstDSI CCRYGG 1 cut(s) 635
BstENI CCTNNNNNAGG 1 cut(s) 79
BstF5I GGATG 2 cut(s) 409, 672
BstFNI CGCG 3 cut(s) 137, 256, 371
BstH2I RGCGCY 1 cut(s) 587
BstHHI GCGC 2 cut(s) 510, 586
BstKTI GATC 4 cut(s) 199, 338, 515, 775
BstMBI GATC 4 cut(s) 196, 335, 512, 772
BstMCI CGRYCG 2 cut(s) 170, 874
BstMWI GCNNNNNNNGC 6 cut(s) 423, 505, 555, 581, 804, 873
BstNI CCWGG 3 cut(s) 194, 379, 414
BstNSI RCATGY 2 cut(s) 394, 508
BstPAI GACNNNNGTC 1 cut(s) 257
BstSCI CCNGG 6 cut(s) 38, 164, 192, 377, 412, 623
BstSFI CTRYAG 1 cut(s) 427
BstUI CGCG 3 cut(s) 137, 256, 371
BstV1I GCAGC 2 cut(s) 413, 700
BstV2I GAAGAC 3 cut(s) 15, 389, 425
BstX2I RGATCY 1 cut(s) 512
BstYI RGATCY 1 cut(s) 512
BsuRI GGCC 2 cut(s) 363, 377
BtgI CCRYGG 1 cut(s) 635
BtrI CACGTC 1 cut(s) 387
BtsCI GGATG 2 cut(s) 409, 672
BtsIMutI CAGTG 3 cut(s) 52, 283, 765
BveI ACCTGC 1 cut(s) 827
Cac8I GCNNGC 3 cut(s) 398, 858, 878
CfoI GCGC 2 cut(s) 510, 586
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 3 cut(s) 42, 50, 362
CseI GACGC 3 cut(s) 126, 262, 538
Csp6I GTAC 2 cut(s) 484, 768
CviAII CATG 5 cut(s) 391, 505, 520, 658, 881
CviQI GTAC 2 cut(s) 484, 768
DpnI GATC 4 cut(s) 198, 337, 514, 774
DpnII GATC 4 cut(s) 196, 335, 512, 772
DriI GACNNNNNGTC 1 cut(s) 653
EaeI YGGCCR 1 cut(s) 375
Eam1104I CTCTTC 2 cut(s) 103, 563
Eam1105I GACNNNNNGTC 1 cut(s) 653
EarI CTCTTC 2 cut(s) 103, 563
EciI GGCGGA 3 cut(s) 163, 631, 810
Eco47I GGWCC 2 cut(s) 42, 50
EcoNI CCTNNNNNAGG 1 cut(s) 79
EcoRII CCWGG 3 cut(s) 192, 377, 412
FaeI CATG 5 cut(s) 394, 508, 523, 661, 884
FaiI YATR 7 cut(s) 392, 506, 521, 659, 695, 854, 882
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 3 cut(s) 148, 736, 765
FatI CATG 5 cut(s) 390, 504, 519, 657, 880
Fnu4HI GCNGC 5 cut(s) 372, 375, 427, 547, 689
FokI GGATG 2 cut(s) 396, 659
Fsp4HI GCNGC 5 cut(s) 372, 375, 427, 547, 689
FspI TGCGCA 1 cut(s) 509
GlaI GCGC 2 cut(s) 509, 585
GluI GCNGC 5 cut(s) 372, 375, 427, 547, 689
GsaI CCCAGC 1 cut(s) 864
GsuI CTGGAG 2 cut(s) 136, 259
HaeII RGCGCY 1 cut(s) 587
HaeIII GGCC 2 cut(s) 363, 377
HapII CCGG 5 cut(s) 40, 93, 166, 624, 870
HgaI GACGC 3 cut(s) 126, 262, 538
HhaI GCGC 2 cut(s) 510, 586
Hin1I GRCGYC 1 cut(s) 549
Hin1II CATG 5 cut(s) 394, 508, 523, 661, 884
Hin6I GCGC 2 cut(s) 508, 584
HinP1I GCGC 2 cut(s) 508, 584
HinfI GANTC 6 cut(s) 406, 442, 457, 540, 589, 648
HpaII CCGG 5 cut(s) 40, 93, 166, 624, 870
HphI GGTGA 9 cut(s) 63, 191, 240, 279, 334, 577, 703, 718, 767
Hpy166II GTNNAC 5 cut(s) 50, 711, 718, 726, 816
Hpy188III TCNNGA 2 cut(s) 27, 78
Hpy8I GTNNAC 5 cut(s) 50, 711, 718, 726, 816
Hpy99I CGWCG 3 cut(s) 256, 406, 554
HpyAV CCTTC 2 cut(s) 75, 606
HpyCH4III ACNGT 5 cut(s) 239, 483, 668, 715, 779
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 4 cut(s) 11, 390, 429, 688
HpyF10VI GCNNNNNNNGC 6 cut(s) 423, 505, 555, 581, 804, 873
HpySE526I ACGT 1 cut(s) 386
Hsp92I GRCGYC 1 cut(s) 549
Hsp92II CATG 5 cut(s) 394, 508, 523, 661, 884
HspAI GCGC 2 cut(s) 508, 584
KpnI GGTACC 1 cut(s) 771
Kzo9I GATC 4 cut(s) 196, 335, 512, 772
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 3 cut(s) 155, 323, 872
Lsp1109I GCAGC 2 cut(s) 413, 700
LweI GCATC 1 cut(s) 20
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 1 cut(s) 285
MalI GATC 4 cut(s) 198, 337, 514, 774
MbiI CCGCTC 1 cut(s) 318
MboI GATC 4 cut(s) 196, 335, 512, 772
MboII GAAGA 8 cut(s) 15, 50, 90, 367, 394, 425, 580, 591
MflI RGATCY 1 cut(s) 512
MhlI GDGCHC 4 cut(s) 283, 315, 398, 869
MluI ACGCGT 1 cut(s) 254
MlyI GAGTC 1 cut(s) 642
MmeI TCCRAC 1 cut(s) 687
MnlI CCTC 6 cut(s) 85, 118, 151, 283, 547, 606
MspA1I CMGCKG 3 cut(s) 293, 546, 860
MspI CCGG 5 cut(s) 40, 93, 166, 624, 870
MspR9I CCNGG 6 cut(s) 40, 166, 194, 379, 414, 625
MvaI CCWGG 3 cut(s) 194, 379, 414
MvnI CGCG 3 cut(s) 137, 256, 371
MwoI GCNNNNNNNGC 6 cut(s) 423, 505, 555, 581, 804, 873
NciI CCSGG 3 cut(s) 40, 166, 625
NdeII GATC 4 cut(s) 196, 335, 512, 772
NlaIII CATG 5 cut(s) 394, 508, 523, 661, 884
NlaIV GGNNCC 2 cut(s) 629, 769
NmuCI GTSAC 1 cut(s) 285
NsbI TGCGCA 1 cut(s) 509
NspI RCATGY 2 cut(s) 394, 508
NspV TTCGAA 1 cut(s) 538
PciSI GCTCTTC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 3 cut(s) 134, 167, 248
PfeI GAWTC 5 cut(s) 406, 442, 457, 540, 589
PkrI GCNGC 5 cut(s) 373, 376, 428, 548, 690
PleI GAGTC 1 cut(s) 642
PpsI GAGTC 1 cut(s) 642
PshAI GACNNNNGTC 1 cut(s) 257
Psp6I CCWGG 3 cut(s) 192, 377, 412
PspFI CCCAGC 1 cut(s) 860
PspGI CCWGG 3 cut(s) 192, 377, 412
PspN4I GGNNCC 2 cut(s) 629, 769
PspPI GGNCC 3 cut(s) 42, 50, 362
PstI CTGCAG 1 cut(s) 431
PsuI RGATCY 1 cut(s) 512
PvuII CAGCTG 2 cut(s) 293, 860
RsaI GTAC 2 cut(s) 485, 769
RsaNI GTAC 2 cut(s) 484, 768
SapI GCTCTTC 1 cut(s) 103
SatI GCNGC 5 cut(s) 372, 375, 427, 547, 689
Sau3AI GATC 4 cut(s) 196, 335, 512, 772
Sau96I GGNCC 3 cut(s) 42, 50, 362
SchI GAGTC 1 cut(s) 642
ScrFI CCNGG 6 cut(s) 40, 166, 194, 379, 414, 625
SduI GDGCHC 4 cut(s) 283, 315, 398, 869
SetI ASST 8 cut(s) 86, 152, 158, 275, 295, 389, 841, 862
SfaNI GCATC 1 cut(s) 20
SfcI CTRYAG 1 cut(s) 427
SfuI TTCGAA 1 cut(s) 538
SinI GGWCC 2 cut(s) 42, 50
StyD4I CCNGG 6 cut(s) 38, 164, 192, 377, 412, 623
TaaI ACNGT 5 cut(s) 239, 483, 668, 715, 779
TaiI ACGT 1 cut(s) 389
TaqI TCGA 3 cut(s) 309, 538, 552
TauI GCSGC 3 cut(s) 374, 377, 549
TfiI GAWTC 5 cut(s) 406, 442, 457, 540, 589
TscAI CASTG 3 cut(s) 52, 283, 765
TseFI GTSAC 1 cut(s) 285
TseI GCWGC 2 cut(s) 426, 688
Tsp45I GTSAC 1 cut(s) 285
TspGWI ACGGA 4 cut(s) 643, 738, 782, 801
TspRI CASTG 3 cut(s) 52, 283, 765
VpaK11BI GGWCC 2 cut(s) 42, 50
XagI CCTNNNNNAGG 1 cut(s) 79
XceI RCATGY 2 cut(s) 394, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.