Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001520

Physical Location & Seq

Genomic Coordinates Forward (+)

8773734 .. 8776594

Gene Structure 2861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCGATTACTTCTTCTAGAACCACCAGATCAAACGGATCTGCTTCGCTCCGATCCAAATCACCGTCCGGTCGATTCTGTGGCGTTTACTCAAACCGTATGCCGTCATCATCTCCGTCGTCGTCAGGTTTCGCTTCTTCCACAAGCTCAAGTTTCTCCTCACCGTCTACAGCGTTTTTCAGCAGCCACAATCAGAACAACCACCACCAACACAGATCTGCTTCTCCGACGCGTGTGAATCTATTCACATCAGCTCCGATGACGCAATCGTTTCGTTACTCAATCGATAACAGATCTATATCACCGAATCGATCCATCGCTGTTTCTTCCAACAAACCTAGCAATCATCACAAGATTCCGGATTCGAGGAGAAGATGTATGTGCTCTCCGACAACGCATCCTGGTTCATTCCGGTGTAGTCTACACAAGAACGTCGCGAATCCACATGGTCAAGGTACAGCTTCGTATACAACGAATGGATTGAATATGCGTCGATCTGCGATGACGAATTCTCTTGTGAGAATTGGTGGTGTTGAAGGTGAATGGGTGCGAAGAGCTTTGACTACTTTGATTAGACCATCTTCACATCAACTAAAGAGAAGATCTGCTTATGAGCCTCGTCGTAGTAGACTCGCATCTATGTCGAAAGCAGAAGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

24.11

Weight (kDa)

11.76

Isoelectric Point (pI)

81.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11090 AT5G25280 AT5G25280 AT5G25280
fragaria_vesca	FvH4_1g01930 FvH4_6g29080 FvH4_6g29090
malus_domestica	MD00G1046800.v1.1 MD08G1152900.v1.1 MD13G1239000.v1.1 MD15G1129600.v1.1 MD15G1161800.v1.1 MD17G1218000.v1.1
prunus_persica	Prupe.1G485100_v2.0.a1 Prupe.1G485100_v2.0.a1 Prupe.3G093600_v2.0.a1 Prupe.7G256900_v2.0.a1 Prupe.7G256900_v2.0.a1
pyrus_communis	pycom02g01570 pycom08g13180 pycom15g11680 pycom15g14540 pycom17g22230
rosa_chinensis	RchiOBHm_Chr2g0086961 RchiOBHm_Chr2g0134271 RchiOBHm_Chr6g0297351
rosa_laevigata	RLG00000011609 RLG00000015818 RLG00000019383
rosa_multiflora	Rmu_co8148184.1_g000001 Rmu_co8308813.1_g000001 Rmu_sc0000418.1_g000003 Rmu_sc0004535.1_g000011 Rmu_sc0009060.1_g000002 Rmu_sc0030045.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110390 Rroxscaffold_7G00170620
rosa_rugosa	Rorug01G0065600 Rorug01G0471100 Rorug02G0315800 Rorug06G0270800
rosa_samantha	Rh2AG023700 Rh2AG368400 Rh2BG374400 Rh2CG352100 Rh2DG024400 Rh2DG391700 Rh6DG382300
rosa_wichuraiana	Rw2G001870 Rw2G030020 Rw6G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	4 cut(s)	167, 421, 467, 628
AccII	CGCG	2 cut(s)	232, 437
AccIII	TCCGGA	1 cut(s)	358
AclWI	GGATC	3 cut(s)	46, 48, 306
AcsI	RAATTY	1 cut(s)	508
AfaI	GTAC	1 cut(s)	457
AflIII	ACRYGT	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	484, 536
AjnI	CCWGG	1 cut(s)	400
AluBI	AGCT	4 cut(s)	147, 254, 461, 557
AluI	AGCT	4 cut(s)	147, 254, 461, 557
Alw21I	GWGCWC	1 cut(s)	386
AlwI	GGATC	3 cut(s)	46, 48, 306
Aor13HI	TCCGGA	1 cut(s)	358
ApeKI	GCWGC	1 cut(s)	183
ApoI	RAATTY	1 cut(s)	508
Asp700I	GAANNNNTTC	1 cut(s)	242
AsuHPI	GGTGA	4 cut(s)	54, 153, 294, 551
Bbv12I	GWGCWC	1 cut(s)	386
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	2 cut(s)	323, 586
BceAI	ACGGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	4 cut(s)	254, 288, 624, 658
BciT130I	CCWGG	1 cut(s)	402
BfaI	CTAG	2 cut(s)	18, 339
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	4 cut(s)	215, 293, 602, 655
BisI	GCNGC	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	2 cut(s)	406, 644
BpuEI	CTTGAG	1 cut(s)	133
Bsa29I	ATCGAT	2 cut(s)	285, 310
BsaBI	GATNNNNATC	2 cut(s)	58, 298
BsaWI	WCCGGW	3 cut(s)	68, 358, 411
BsaXI	ACNNNNNCTCC	4 cut(s)	238, 268, 361, 391
Bse8I	GATNNNNATC	2 cut(s)	58, 298
BseAI	TCCGGA	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	402
BseCI	ATCGAT	2 cut(s)	285, 310
BseGI	GGATG	1 cut(s)	397
BseJI	GATNNNNATC	2 cut(s)	58, 298
BseRI	GAGGAG	2 cut(s)	148, 382
BseXI	GCAGC	1 cut(s)	195
Bsh1236I	CGCG	2 cut(s)	232, 437
Bsh1285I	CGRYCG	1 cut(s)	73
BshVI	ATCGAT	2 cut(s)	285, 310
BsiEI	CGRYCG	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	386
BsiSI	CCGG	3 cut(s)	69, 359, 412
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp13I	TCCGGA	1 cut(s)	358
Bsp143I	GATC	9 cut(s)	29, 38, 53, 215, 293, 311, 494, 602, 655
Bsp68I	TCGCGA	1 cut(s)	437
BspDI	ATCGAT	2 cut(s)	285, 310
BspEI	TCCGGA	1 cut(s)	358
BspFNI	CGCG	2 cut(s)	232, 437
BspPI	GGATC	3 cut(s)	46, 48, 306
BspQI	GCTCTTC	1 cut(s)	547
BssMI	GATC	9 cut(s)	29, 38, 53, 215, 293, 311, 494, 602, 655
BssNAI	GTATAC	1 cut(s)	468
Bst1107I	GTATAC	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	3 cut(s)	66, 98, 165
Bst6I	CTCTTC	1 cut(s)	547
BstF5I	GGATG	1 cut(s)	397
BstFNI	CGCG	2 cut(s)	232, 437
BstKTI	GATC	9 cut(s)	32, 41, 56, 218, 296, 314, 497, 605, 658
BstMBI	GATC	9 cut(s)	29, 38, 53, 215, 293, 311, 494, 602, 655
BstMCI	CGRYCG	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	168
BstUI	CGCG	2 cut(s)	232, 437
BstV1I	GCAGC	1 cut(s)	195
BstX2I	RGATCY	5 cut(s)	38, 215, 293, 602, 655
BstYI	RGATCY	5 cut(s)	38, 215, 293, 602, 655
BstZ17I	GTATAC	1 cut(s)	468
Bsu15I	ATCGAT	2 cut(s)	285, 310
BsuTUI	ATCGAT	2 cut(s)	285, 310
BtgZI	GCGATG	2 cut(s)	301, 515
BtsCI	GGATG	1 cut(s)	397
BtuMI	TCGCGA	1 cut(s)	437
ClaI	ATCGAT	2 cut(s)	285, 310
CseI	GACGC	3 cut(s)	238, 271, 479
Csp6I	GTAC	1 cut(s)	456
CviAII	CATG	1 cut(s)	446
CviJI	RGCY	6 cut(s)	147, 186, 254, 461, 557, 616
CviKI_1	RGCY	6 cut(s)	147, 186, 254, 461, 557, 616
CviQI	GTAC	1 cut(s)	456
DpnI	GATC	9 cut(s)	31, 40, 55, 217, 295, 313, 496, 604, 657
DpnII	GATC	9 cut(s)	29, 38, 53, 215, 293, 311, 494, 602, 655
Eam1104I	CTCTTC	1 cut(s)	547
EarI	CTCTTC	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	400
FaeI	CATG	1 cut(s)	449
FaiI	YATR	8 cut(s)	101, 299, 380, 447, 468, 488, 612, 641
FalI	AAGNNNNNCTT	2 cut(s)	592, 624
FatI	CATG	1 cut(s)	445
FblI	GTMKAC	4 cut(s)	167, 421, 467, 628
Fnu4HI	GCNGC	1 cut(s)	184
FokI	GGATG	1 cut(s)	384
Fsp4HI	GCNGC	1 cut(s)	184
FspBI	CTAG	2 cut(s)	18, 339
GluI	GCNGC	1 cut(s)	184
HapII	CCGG	3 cut(s)	69, 359, 412
HgaI	GACGC	3 cut(s)	238, 271, 479
Hin1II	CATG	1 cut(s)	449
HinfI	GANTC	7 cut(s)	75, 238, 307, 355, 362, 439, 630
HpaII	CCGG	3 cut(s)	69, 359, 412
HphI	GGTGA	4 cut(s)	54, 153, 294, 551
Hpy166II	GTNNAC	5 cut(s)	88, 168, 422, 468, 629
Hpy188I	TCNGA	5 cut(s)	53, 195, 228, 258, 390
Hpy188III	TCNNGA	3 cut(s)	18, 359, 436
Hpy8I	GTNNAC	5 cut(s)	88, 168, 422, 468, 629
Hpy99I	CGWCG	6 cut(s)	121, 124, 232, 437, 495, 624
HpyAV	CCTTC	1 cut(s)	530
HpyCH4III	ACNGT	3 cut(s)	66, 98, 165
HpyCH4IV	ACGT	1 cut(s)	432
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	1 cut(s)	449
Kpn2I	TCCGGA	1 cut(s)	358
Kzo9I	GATC	9 cut(s)	29, 38, 53, 215, 293, 311, 494, 602, 655
LguI	GCTCTTC	1 cut(s)	547
LmnI	GCTCC	2 cut(s)	54, 259
LpnPI	CCDG	7 cut(s)	40, 82, 111, 372, 387, 414, 425
Lsp1109I	GCAGC	1 cut(s)	195
LweI	GCATC	2 cut(s)	406, 644
MaeI	CTAG	2 cut(s)	18, 339
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	9 cut(s)	31, 40, 55, 217, 295, 313, 496, 604, 657
MboI	GATC	9 cut(s)	29, 38, 53, 215, 293, 311, 494, 602, 655
MboII	GAAGA	7 cut(s)	6, 129, 318, 384, 564, 573, 612
MflI	RGATCY	5 cut(s)	38, 215, 293, 602, 655
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	2 cut(s)	508, 522
MluI	ACGCGT	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	624
MmeI	TCCRAC	3 cut(s)	251, 354, 413
MnlI	CCTC	3 cut(s)	169, 360, 627
MroI	TCCGGA	1 cut(s)	358
MroXI	GAANNNNTTC	1 cut(s)	242
MslI	CAYNNNNRTG	1 cut(s)	412
MspI	CCGG	3 cut(s)	69, 359, 412
MspR9I	CCNGG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	402
MvnI	CGCG	2 cut(s)	232, 437
NdeII	GATC	9 cut(s)	29, 38, 53, 215, 293, 311, 494, 602, 655
NlaIII	CATG	1 cut(s)	449
NruI	TCGCGA	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	470
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	6 cut(s)	75, 238, 307, 355, 362, 439
PkrI	GCNGC	1 cut(s)	185
PleI	GAGTC	1 cut(s)	624
PpsI	GAGTC	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PsuI	RGATCY	5 cut(s)	38, 215, 293, 602, 655
RruI	TCGCGA	1 cut(s)	437
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	412
SapI	GCTCTTC	1 cut(s)	547
SatI	GCNGC	1 cut(s)	184
Sau3AI	GATC	9 cut(s)	29, 38, 53, 215, 293, 311, 494, 602, 655
SchI	GAGTC	1 cut(s)	624
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	9 cut(s)	130, 149, 256, 340, 435, 457, 463, 541, 559
SfaNI	GCATC	2 cut(s)	406, 644
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	412
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	2 cut(s)	508, 522
SspMI	CTAG	2 cut(s)	18, 339
StyD4I	CCNGG	1 cut(s)	400
TaaI	ACNGT	3 cut(s)	66, 98, 165
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	6 cut(s)	73, 285, 310, 365, 493, 644
TasI	AATT	2 cut(s)	508, 522
TfiI	GAWTC	6 cut(s)	75, 238, 307, 355, 362, 439
TseI	GCWGC	1 cut(s)	183
TspDTI	ATGAA	1 cut(s)	396
TspGWI	ACGGA	2 cut(s)	51, 105
XapI	RAATTY	1 cut(s)	508
XbaI	TCTAGA	1 cut(s)	17
XmiI	GTMKAC	4 cut(s)	167, 421, 467, 628
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	2 cut(s)	18, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.