MD00G1046800.v1.1

Serine-rich protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0001520
Physical Location & Seq
Forward (+)
8747340 .. 8748457
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1046800.v1.1.491

Sequence Viewer

Length: 261 bp
ATGCGTATCAACCTCTACACCTTCTCATTTCCGTCTCCGTCCGTTCGGTTCTCCATCAACCACCATTCGATTTCTCCCAACCATCATTCGAATCGATCCACTGCCGTTTCAAAGAAAACCGGACCGATTTTGATGCCGAGGAAGGTATGTGCTCGCCGACGTCGTAGCCAGATCATTTCGTTGCAACCTCCACAAGAACCACGGAGGGAGTCAAAACACCGGATCTTTCCCGTCGAACAGATTGAATATGTGCCGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

10.07

Weight (kDa)

11.6

Isoelectric Point (pI)

100.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 163
AclWI GGATC 2 cut(s) 90, 230
AcyI GRCGYC 1 cut(s) 160
AgsI TTSAA 2 cut(s) 111, 245
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 2 cut(s) 90, 230
AspS9I GGNCC 1 cut(s) 122
AsuII TTCGAA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 154
BccI CCATC 2 cut(s) 62, 90
BceAI ACGGC 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BcoDI GTCTC 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmsI GCATC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 94
BsaHI GRCGYC 1 cut(s) 160
BsaJI CCNNGG 2 cut(s) 137, 200
BsaWI WCCGGW 2 cut(s) 119, 219
BseCI ATCGAT 1 cut(s) 94
BseDI CCNNGG 2 cut(s) 137, 200
BshVI ATCGAT 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 2 cut(s) 120, 220
BsmAI GTCTC 1 cut(s) 39
BsmBI CGTCTC 1 cut(s) 39
Bsp119I TTCGAA 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 4 cut(s) 95, 171, 222, 255
BspDI ATCGAT 1 cut(s) 94
BspPI GGATC 2 cut(s) 90, 230
BspT104I TTCGAA 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 137, 200
BssMI GATC 4 cut(s) 95, 171, 222, 255
BssNI GRCGYC 1 cut(s) 160
BstACI GRCGYC 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 154
BstDSI CCRYGG 1 cut(s) 200
BstKTI GATC 4 cut(s) 98, 174, 225, 258
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 4 cut(s) 95, 171, 222, 255
BstX2I RGATCY 1 cut(s) 222
BstYI RGATCY 1 cut(s) 222
Bsu15I ATCGAT 1 cut(s) 94
BsuTUI ATCGAT 1 cut(s) 94
BtgI CCRYGG 1 cut(s) 200
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 122
ClaI ATCGAT 1 cut(s) 94
CpoI CGGWCCG 1 cut(s) 122
CspI CGGWCCG 1 cut(s) 122
CviJI RGCY 1 cut(s) 168
CviKI_1 RGCY 1 cut(s) 168
DpnI GATC 4 cut(s) 97, 173, 224, 257
DpnII GATC 4 cut(s) 95, 171, 222, 255
Eco47I GGWCC 1 cut(s) 122
Esp3I CGTCTC 1 cut(s) 39
FaiI YATR 2 cut(s) 148, 249
HapII CCGG 2 cut(s) 120, 220
Hin1I GRCGYC 1 cut(s) 160
HinfI GANTC 2 cut(s) 91, 209
HpaII CCGG 2 cut(s) 120, 220
Hpy188I TCNGA 1 cut(s) 260
Hpy99I CGWCG 3 cut(s) 162, 165, 236
HpyAV CCTTC 2 cut(s) 31, 136
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 160
Kzo9I GATC 4 cut(s) 95, 171, 222, 255
LpnPI CCDG 3 cut(s) 133, 182, 233
LweI GCATC 1 cut(s) 123
MaeII ACGT 1 cut(s) 160
MalI GATC 4 cut(s) 97, 173, 224, 257
MboI GATC 4 cut(s) 95, 171, 222, 255
MflI RGATCY 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 154
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 4 cut(s) 23, 132, 198, 198
MspI CCGG 2 cut(s) 120, 220
NdeII GATC 4 cut(s) 95, 171, 222, 255
NmeAIII GCCGAG 1 cut(s) 162
NspV TTCGAA 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PfeI GAWTC 1 cut(s) 91
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 222
Rsr2I CGGWCCG 1 cut(s) 122
RsrII CGGWCCG 1 cut(s) 122
Sau3AI GATC 4 cut(s) 95, 171, 222, 255
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 1 cut(s) 218
SduI GDGCHC 1 cut(s) 154
SetI ASST 5 cut(s) 15, 23, 147, 163, 190
SfaNI GCATC 1 cut(s) 123
SfuI TTCGAA 1 cut(s) 89
SgeI CNNG 8 cut(s) 132, 150, 165, 181, 206, 213, 232, 242
SinI GGWCC 1 cut(s) 122
TaiI ACGT 1 cut(s) 163
TaqI TCGA 4 cut(s) 68, 89, 94, 234
TaqII GACCGA 1 cut(s) 139
TfiI GAWTC 1 cut(s) 91
TscAI CASTG 1 cut(s) 106
TspGWI ACGGA 4 cut(s) 21, 27, 31, 217
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 122
ZraI GACGTC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.