Rmu_sc0030045.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030045.1
OG0001520
Physical Location & Seq
Forward (+)
169 .. 678
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030045.1_g000001.1.cds

Sequence Viewer

Length: 510 bp
atggcaacagcttctagaaggtcgtcagcaacgggatcggtcctccggtccaccgcctcaccctcactctccggaaggttctacacctcccatccctcctcctccaccggcttcgcctcctccacttccagcttctcctcccgatccgccggcggtttcttcacacgcgccgcctctcccccgcgcgtgagcctcgccagaccctctccctcggctcagtccgtccggttctctctccacgaccgccctacctcccccagccgctccatctccgtctcgccgcacggctccgacagccaccaccggagcgcgatgaggaagcaggtcaatcctaagaggacctgtatgtgctcccccacttctcacccaggctccttccggtgcagcctacacaagaactgtggctcgcacgcgtcgagttcctcctcgccgccgtactcgcagaaccgcctcaacgcgcgtagatcggcgatgacgaactcgctggtcaggatcggcggcgtggagggc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

17.89

Weight (kDa)

11.96

Isoelectric Point (pI)

86.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccBSI CCGCTC 1 cut(s) 264
AccII CGCG 7 cut(s) 168, 184, 186, 311, 413, 458, 460
AccIII TCCGGA 1 cut(s) 71
AclWI GGATC 3 cut(s) 43, 138, 500
AfaI GTAC 1 cut(s) 437
AflIII ACRYGT 1 cut(s) 411
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 2 cut(s) 11, 132
AluI AGCT 2 cut(s) 11, 132
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 3 cut(s) 43, 138, 500
Aor13HI TCCGGA 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 384
AspLEI GCGC 4 cut(s) 170, 186, 311, 460
AspS9I GGNCC 3 cut(s) 40, 48, 339
AsuHPI GGTGA 2 cut(s) 51, 356
AvaII GGWCC 3 cut(s) 40, 48, 339
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 1 cut(s) 396
BccI CCATC 2 cut(s) 99, 275
BceAI ACGGC 2 cut(s) 301, 418
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 6 cut(s) 171, 262, 281, 385, 431, 499
BlsI GCNGC 6 cut(s) 172, 263, 282, 386, 432, 500
Bme1390I CCNGG 1 cut(s) 369
Bme18I GGWCC 3 cut(s) 40, 48, 339
BmgT120I GGNCC 3 cut(s) 40, 48, 339
BmiI GGNNCC 2 cut(s) 289, 373
BmrFI CCNGG 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 210, 367
BsaWI WCCGGW 5 cut(s) 45, 71, 225, 303, 378
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bse118I RCCGGY 2 cut(s) 107, 149
BseAI TCCGGA 1 cut(s) 71
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 2 cut(s) 210, 367
BseGI GGATG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 230
BseRI GAGGAG 5 cut(s) 88, 91, 109, 127, 415
BseXI GCAGC 1 cut(s) 396
BseYI CCCAGC 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 403
Bsh1236I CGCG 7 cut(s) 168, 184, 186, 311, 413, 458, 460
Bsh1285I CGRYCG 1 cut(s) 244
BsiEI CGRYCG 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 353
BsiSI CCGG 7 cut(s) 46, 72, 108, 150, 226, 304, 379
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 353
Bsp13I TCCGGA 1 cut(s) 71
Bsp143I GATC 4 cut(s) 35, 143, 464, 492
BspCNI CTCAG 1 cut(s) 229
BspEI TCCGGA 1 cut(s) 71
BspFNI CGCG 7 cut(s) 168, 184, 186, 311, 413, 458, 460
BspLI GGNNCC 2 cut(s) 289, 373
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 3 cut(s) 43, 138, 500
BsrBI CCGCTC 1 cut(s) 264
BsrFI RCCGGY 2 cut(s) 107, 149
BssAI RCCGGY 2 cut(s) 107, 149
BssECI CCNNGG 2 cut(s) 210, 367
BssMI GATC 4 cut(s) 35, 143, 464, 492
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 401
BstC8I GCNNGC 3 cut(s) 151, 407, 411
BstDEI CTNAG 2 cut(s) 216, 333
BstF5I GGATG 1 cut(s) 91
BstFNI CGCG 7 cut(s) 168, 184, 186, 311, 413, 458, 460
BstHHI GCGC 4 cut(s) 170, 186, 311, 460
BstKTI GATC 4 cut(s) 38, 146, 467, 495
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 4 cut(s) 35, 143, 464, 492
BstMCI CGRYCG 1 cut(s) 244
BstMWI GCNNNNNNNGC 3 cut(s) 294, 439, 507
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 367
BstUI CGCG 7 cut(s) 168, 184, 186, 311, 413, 458, 460
BstV1I GCAGC 1 cut(s) 396
BtgZI GCGATG 2 cut(s) 326, 485
BtsCI GGATG 1 cut(s) 91
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 3 cut(s) 151, 407, 411
CfoI GCGC 4 cut(s) 170, 186, 311, 460
Cfr10I RCCGGY 2 cut(s) 107, 149
Cfr13I GGNCC 3 cut(s) 40, 48, 339
CseI GACGC 1 cut(s) 402
Csp6I GTAC 1 cut(s) 436
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 2 cut(s) 216, 333
DpnI GATC 4 cut(s) 37, 145, 466, 494
DpnII GATC 4 cut(s) 35, 143, 464, 492
EciI GGCGGA 1 cut(s) 136
Eco47I GGWCC 3 cut(s) 40, 48, 339
EcoO109I RGGNCCY 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 367
Esp3I CGTCTC 1 cut(s) 280
FaiI YATR 1 cut(s) 347
FauI CCCGC 1 cut(s) 189
Fnu4HI GCNGC 6 cut(s) 171, 262, 281, 385, 431, 499
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 6 cut(s) 171, 262, 281, 385, 431, 499
FspBI CTAG 1 cut(s) 15
GlaI GCGC 4 cut(s) 169, 185, 310, 459
GluI GCNGC 6 cut(s) 171, 262, 281, 385, 431, 499
GsaI CCCAGC 1 cut(s) 261
HapII CCGG 7 cut(s) 46, 72, 108, 150, 226, 304, 379
HgaI GACGC 1 cut(s) 402
HhaI GCGC 4 cut(s) 170, 186, 311, 460
Hin6I GCGC 4 cut(s) 168, 184, 309, 458
HinP1I GCGC 4 cut(s) 168, 184, 309, 458
HpaII CCGG 7 cut(s) 46, 72, 108, 150, 226, 304, 379
HphI GGTGA 2 cut(s) 51, 356
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 4 cut(s) 15, 72, 141, 490
Hpy8I GTNNAC 1 cut(s) 51
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 3 cut(s) 12, 69, 385
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4V TGCA 1 cut(s) 384
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 439, 507
HpyF3I CTNAG 2 cut(s) 216, 333
HspAI GCGC 4 cut(s) 168, 184, 309, 458
Kpn2I TCCGGA 1 cut(s) 71
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Kzo9I GATC 4 cut(s) 35, 143, 464, 492
LmnI GCTCC 5 cut(s) 269, 293, 306, 356, 377
Lsp1109I GCAGC 1 cut(s) 396
MaeI CTAG 1 cut(s) 15
MalI GATC 4 cut(s) 37, 145, 466, 494
MbiI CCGCTC 1 cut(s) 264
MboI GATC 4 cut(s) 35, 143, 464, 492
MboII GAAGA 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 353
MluI ACGCGT 1 cut(s) 411
MmeI TCCRAC 1 cut(s) 315
MreI CGCCGGCG 1 cut(s) 149
MroI TCCGGA 1 cut(s) 71
MroNI GCCGGC 1 cut(s) 149
MspI CCGG 7 cut(s) 46, 72, 108, 150, 226, 304, 379
MspR9I CCNGG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 369
MvnI CGCG 7 cut(s) 168, 184, 186, 311, 413, 458, 460
MwoI GCNNNNNNNGC 3 cut(s) 294, 439, 507
NaeI GCCGGC 1 cut(s) 151
NdeII GATC 4 cut(s) 35, 143, 464, 492
NgoMIV GCCGGC 1 cut(s) 149
NlaIV GGNNCC 2 cut(s) 289, 373
NmeAIII GCCGAG 1 cut(s) 191
PcsI WCGNNNNNNNCGW 2 cut(s) 413, 473
PdiI GCCGGC 1 cut(s) 151
PkrI GCNGC 6 cut(s) 172, 263, 282, 386, 432, 500
PpuMI RGGWCCY 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 367
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 2 cut(s) 289, 373
PspPI GGNCC 3 cut(s) 40, 48, 339
PspPPI RGGWCCY 1 cut(s) 339
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
SatI GCNGC 6 cut(s) 171, 262, 281, 385, 431, 499
Sau3AI GATC 4 cut(s) 35, 143, 464, 492
Sau96I GGNCC 3 cut(s) 40, 48, 339
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 1 cut(s) 353
SetI ASST 8 cut(s) 13, 23, 80, 89, 134, 254, 327, 344
SgrAI CRCCGGYG 1 cut(s) 149
SinI GGWCC 3 cut(s) 40, 48, 339
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 367
TaaI ACNGT 1 cut(s) 401
TaqI TCGA 1 cut(s) 416
TaqII GACCGA 1 cut(s) 28
TauI GCSGC 5 cut(s) 173, 264, 283, 433, 501
TseI GCWGC 1 cut(s) 384
TspGWI ACGGA 2 cut(s) 211, 262
VpaK11BI GGWCC 3 cut(s) 40, 48, 339
XbaI TCTAGA 1 cut(s) 14
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.