Rh2DG024400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001520
Physical Location & Seq
Forward (+)
1451713 .. 1456826
5114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG024400.1

Sequence Viewer

Length: 630 bp
ATGGCAACAGCTTCTAGAAGGTCGTCAGCAACGGGATCGGTCCTCCGGTCCACCGCCTCACCCTCACTCTCCGGAAGGTTCTACACCTCCCATTCCTCCTCCTCCACCGGCTTCGCCTCCTCCACTTCCAGCTTCTCCTCCCGATCCGCAGGCGGTTTCTTCACACGCGCCGCCTCTCCCCCGCGCGTGAGCCTCGCCAGACCCTCTCCCTCGGCTCAGTCCGTCCGGTTCTCTCTCCACGACCGCCCTACCTCCCCCAGCCGCTCCATCTCCGTCTCGCCGCACGGCTCCGACAGCCACCACCGGAGCGCGATGAGGAAGCAGGTCAACCCTAAGAGGACCTGTATGTGCTCCCCCACTTCTCACCCAGGCTCCTTCCGGTGCAGCCTACACAAGAACTGTGGCTCGCACGTGTCGAGTTCCTCCTCTCCGCCGTACTCGCAGAACCGCCTCAACGCGCGTAGATCGGCGATGACGAACTCGCTGGTCAGGATCGGCGGCGTGGAGGGCGATCTCGTGAAGCGCGCCTTGGCCGCTCTGATCCGCCCCTCCTCCCACAGCCAGCGGCGCCGTGCCGATTTCCGTCCCCGGCCCAGCCGGCTCTCCACCATGTCGAAGTGCAGCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

22.37

Weight (kDa)

11.97

Isoelectric Point (pI)

88.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 567
AccBSI CCGCTC 2 cut(s) 264, 536
AccII CGCG 7 cut(s) 168, 184, 186, 311, 458, 460, 525
AccIII TCCGGA 1 cut(s) 71
AclWI GGATC 4 cut(s) 43, 138, 500, 535
AcoI YGGCCR 1 cut(s) 531
AcvI CACGTG 1 cut(s) 412
AcyI GRCGYC 1 cut(s) 568
AfaI GTAC 1 cut(s) 437
AflIII ACRYGT 1 cut(s) 411
AjnI CCWGG 1 cut(s) 367
AjuI GAANNNNNNNTTGG 2 cut(s) 512, 544
AluBI AGCT 2 cut(s) 11, 132
AluI AGCT 2 cut(s) 11, 132
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 4 cut(s) 43, 138, 500, 535
Aor13HI TCCGGA 1 cut(s) 71
AoxI GGCC 2 cut(s) 531, 590
ApeKI GCWGC 2 cut(s) 384, 621
AspLEI GCGC 7 cut(s) 170, 186, 311, 460, 525, 527, 570
AspS9I GGNCC 4 cut(s) 40, 48, 339, 591
AsuC2I CCSGG 1 cut(s) 589
AsuHPI GGTGA 2 cut(s) 51, 356
AvaII GGWCC 3 cut(s) 40, 48, 339
BanI GGYRCC 1 cut(s) 567
BauI CACGAG 1 cut(s) 515
BbrPI CACGTG 1 cut(s) 412
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 1 cut(s) 396
BccI CCATC 1 cut(s) 275
BceAI ACGGC 3 cut(s) 301, 418, 555
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 1 cut(s) 369
BcnI CCSGG 1 cut(s) 589
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 571
BfuAI ACCTGC 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 598
BisI GCNGC 8 cut(s) 171, 262, 281, 385, 499, 534, 566, 622
BlsI GCNGC 8 cut(s) 172, 263, 282, 386, 500, 535, 567, 623
Bme1390I CCNGG 2 cut(s) 369, 589
Bme18I GGWCC 3 cut(s) 40, 48, 339
BmgT120I GGNCC 4 cut(s) 40, 48, 339, 591
BmiI GGNNCC 3 cut(s) 289, 373, 569
BmrFI CCNGG 2 cut(s) 369, 589
BpuMI CCSGG 1 cut(s) 589
BsaAI YACGTR 1 cut(s) 412
BsaHI GRCGYC 1 cut(s) 568
BsaJI CCNNGG 4 cut(s) 210, 367, 528, 587
BsaWI WCCGGW 5 cut(s) 45, 71, 225, 303, 378
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bse118I RCCGGY 2 cut(s) 107, 597
BseAI TCCGGA 1 cut(s) 71
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 4 cut(s) 210, 367, 528, 587
BseMII CTCAG 1 cut(s) 230
BsePI GCGCGC 1 cut(s) 523
BseRI GAGGAG 6 cut(s) 88, 91, 109, 127, 415, 541
BseXI GCAGC 1 cut(s) 396
BseYI CCCAGC 2 cut(s) 257, 593
BsgI GTGCAG 1 cut(s) 403
Bsh1236I CGCG 7 cut(s) 168, 184, 186, 311, 458, 460, 525
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 2 cut(s) 533, 592
BshNI GGYRCC 1 cut(s) 567
BsiEI CGRYCG 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 353
BsiSI CCGG 8 cut(s) 46, 72, 108, 226, 304, 379, 589, 598
BslFI GGGAC 1 cut(s) 570
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 570
BsnI GGCC 2 cut(s) 533, 592
Bsp1286I GDGCHC 1 cut(s) 353
Bsp13I TCCGGA 1 cut(s) 71
Bsp143I GATC 6 cut(s) 35, 143, 464, 492, 511, 540
BspANI GGCC 2 cut(s) 533, 592
BspCNI CTCAG 1 cut(s) 229
BspEI TCCGGA 1 cut(s) 71
BspFNI CGCG 7 cut(s) 168, 184, 186, 311, 458, 460, 525
BspLI GGNNCC 3 cut(s) 289, 373, 569
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 4 cut(s) 43, 138, 500, 535
BspT107I GGYRCC 1 cut(s) 567
BsrBI CCGCTC 2 cut(s) 264, 536
BsrFI RCCGGY 2 cut(s) 107, 597
BssAI RCCGGY 2 cut(s) 107, 597
BssECI CCNNGG 4 cut(s) 210, 367, 528, 587
BssHII GCGCGC 1 cut(s) 523
BssMI GATC 6 cut(s) 35, 143, 464, 492, 511, 540
BssNI GRCGYC 1 cut(s) 568
BssSI CACGAG 1 cut(s) 515
BssT1I CCWWGG 1 cut(s) 528
Bst2BI CACGAG 1 cut(s) 515
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 401
BstACI GRCGYC 1 cut(s) 568
BstBAI YACGTR 1 cut(s) 412
BstC8I GCNNGC 5 cut(s) 151, 407, 525, 563, 599
BstDEI CTNAG 2 cut(s) 216, 333
BstFNI CGCG 7 cut(s) 168, 184, 186, 311, 458, 460, 525
BstH2I RGCGCY 1 cut(s) 571
BstHHI GCGC 7 cut(s) 170, 186, 311, 460, 525, 527, 570
BstKTI GATC 6 cut(s) 38, 146, 467, 495, 514, 543
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 6 cut(s) 35, 143, 464, 492, 511, 540
BstMCI CGRYCG 1 cut(s) 244
BstMWI GCNNNNNNNGC 6 cut(s) 294, 439, 507, 533, 567, 598
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 2 cut(s) 367, 587
BstUI CGCG 7 cut(s) 168, 184, 186, 311, 458, 460, 525
BstV1I GCAGC 1 cut(s) 396
BsuRI GGCC 2 cut(s) 533, 592
BtgZI GCGATG 2 cut(s) 326, 485
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 5 cut(s) 151, 407, 525, 563, 599
CfoI GCGC 7 cut(s) 170, 186, 311, 460, 525, 527, 570
Cfr10I RCCGGY 2 cut(s) 107, 597
Cfr13I GGNCC 4 cut(s) 40, 48, 339, 591
Csp6I GTAC 1 cut(s) 436
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviAII CATG 1 cut(s) 610
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 2 cut(s) 216, 333
DinI GGCGCC 1 cut(s) 569
DpnI GATC 6 cut(s) 37, 145, 466, 494, 513, 542
DpnII GATC 6 cut(s) 35, 143, 464, 492, 511, 540
EaeI YGGCCR 1 cut(s) 531
EciI GGCGGA 2 cut(s) 420, 533
Eco130I CCWWGG 1 cut(s) 528
Eco47I GGWCC 3 cut(s) 40, 48, 339
Eco72I CACGTG 1 cut(s) 412
EcoO109I RGGNCCY 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 528
EgeI GGCGCC 1 cut(s) 569
EheI GGCGCC 1 cut(s) 569
ErhI CCWWGG 1 cut(s) 528
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 1 cut(s) 613
FaiI YATR 2 cut(s) 347, 611
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FaqI GGGAC 1 cut(s) 570
FatI CATG 1 cut(s) 609
FauI CCCGC 1 cut(s) 189
Fnu4HI GCNGC 8 cut(s) 171, 262, 281, 385, 499, 534, 566, 622
Fsp4HI GCNGC 8 cut(s) 171, 262, 281, 385, 499, 534, 566, 622
FspBI CTAG 1 cut(s) 15
GlaI GCGC 7 cut(s) 169, 185, 310, 459, 524, 526, 569
GluI GCNGC 8 cut(s) 171, 262, 281, 385, 499, 534, 566, 622
GsaI CCCAGC 2 cut(s) 261, 597
HaeII RGCGCY 1 cut(s) 571
HaeIII GGCC 2 cut(s) 533, 592
HapII CCGG 8 cut(s) 46, 72, 108, 226, 304, 379, 589, 598
HhaI GCGC 7 cut(s) 170, 186, 311, 460, 525, 527, 570
Hin1I GRCGYC 1 cut(s) 568
Hin1II CATG 1 cut(s) 613
Hin6I GCGC 7 cut(s) 168, 184, 309, 458, 523, 525, 568
HinP1I GCGC 7 cut(s) 168, 184, 309, 458, 523, 525, 568
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HpaII CCGG 8 cut(s) 46, 72, 108, 226, 304, 379, 589, 598
HphI GGTGA 2 cut(s) 51, 356
Hpy166II GTNNAC 2 cut(s) 51, 328
Hpy188I TCNGA 2 cut(s) 292, 540
Hpy188III TCNNGA 5 cut(s) 15, 72, 141, 490, 517
Hpy8I GTNNAC 2 cut(s) 51, 328
HpyAV CCTTC 3 cut(s) 12, 69, 385
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 2 cut(s) 384, 621
HpyF10VI GCNNNNNNNGC 6 cut(s) 294, 439, 507, 533, 567, 598
HpyF3I CTNAG 2 cut(s) 216, 333
HpySE526I ACGT 1 cut(s) 411
Hsp92I GRCGYC 1 cut(s) 568
Hsp92II CATG 1 cut(s) 613
HspAI GCGC 7 cut(s) 168, 184, 309, 458, 523, 525, 568
KasI GGCGCC 1 cut(s) 567
Kpn2I TCCGGA 1 cut(s) 71
KroI GCCGGC 1 cut(s) 597
KroNI GCCGGC 1 cut(s) 599
Kzo9I GATC 6 cut(s) 35, 143, 464, 492, 511, 540
LmnI GCTCC 5 cut(s) 269, 293, 306, 356, 377
Lsp1109I GCAGC 1 cut(s) 396
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 411
MalI GATC 6 cut(s) 37, 145, 466, 494, 513, 542
MbiI CCGCTC 2 cut(s) 264, 536
MboI GATC 6 cut(s) 35, 143, 464, 492, 511, 540
MboII GAAGA 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 353
Mly113I GGCGCC 1 cut(s) 568
MmeI TCCRAC 1 cut(s) 315
MroI TCCGGA 1 cut(s) 71
MroNI GCCGGC 1 cut(s) 597
MspA1I CMGCKG 1 cut(s) 565
MspI CCGG 8 cut(s) 46, 72, 108, 226, 304, 379, 589, 598
MspR9I CCNGG 2 cut(s) 369, 589
MvaI CCWGG 1 cut(s) 369
MvnI CGCG 7 cut(s) 168, 184, 186, 311, 458, 460, 525
MwoI GCNNNNNNNGC 6 cut(s) 294, 439, 507, 533, 567, 598
NaeI GCCGGC 1 cut(s) 599
NarI GGCGCC 1 cut(s) 568
NciI CCSGG 1 cut(s) 589
NdeII GATC 6 cut(s) 35, 143, 464, 492, 511, 540
NgoMIV GCCGGC 1 cut(s) 597
NlaIII CATG 1 cut(s) 613
NlaIV GGNNCC 3 cut(s) 289, 373, 569
NmeAIII GCCGAG 1 cut(s) 191
PauI GCGCGC 1 cut(s) 523
PcsI WCGNNNNNNNCGW 2 cut(s) 413, 473
PdiI GCCGGC 1 cut(s) 599
PkrI GCNGC 8 cut(s) 172, 263, 282, 386, 500, 535, 567, 623
PluTI GGCGCC 1 cut(s) 571
PmaCI CACGTG 1 cut(s) 412
PmlI CACGTG 1 cut(s) 412
Ppu21I YACGTR 1 cut(s) 412
PpuMI RGGWCCY 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 367
PspCI CACGTG 1 cut(s) 412
PspFI CCCAGC 2 cut(s) 257, 593
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 3 cut(s) 289, 373, 569
PspPI GGNCC 4 cut(s) 40, 48, 339, 591
PspPPI RGGWCCY 1 cut(s) 339
PteI GCGCGC 1 cut(s) 523
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
SatI GCNGC 8 cut(s) 171, 262, 281, 385, 499, 534, 566, 622
Sau3AI GATC 6 cut(s) 35, 143, 464, 492, 511, 540
Sau96I GGNCC 4 cut(s) 40, 48, 339, 591
ScrFI CCNGG 2 cut(s) 369, 589
SduI GDGCHC 1 cut(s) 353
SetI ASST 9 cut(s) 13, 23, 80, 89, 134, 254, 327, 344, 414
SfoI GGCGCC 1 cut(s) 569
SinI GGWCC 3 cut(s) 40, 48, 339
SspDI GGCGCC 1 cut(s) 567
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 367, 587
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 1 cut(s) 401
TaiI ACGT 1 cut(s) 414
TaqI TCGA 2 cut(s) 416, 614
TaqII GACCGA 1 cut(s) 28
TauI GCSGC 6 cut(s) 173, 264, 283, 501, 536, 568
TseI GCWGC 2 cut(s) 384, 621
TspGWI ACGGA 3 cut(s) 211, 262, 572
VpaK11BI GGWCC 3 cut(s) 40, 48, 339
XbaI TCTAGA 1 cut(s) 14
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.