Rh2CG352100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001520
Physical Location & Seq
Forward (+)
47684964 .. 47696440
11477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG352100.1

Sequence Viewer

Length: 786 bp
ATGGCGGTGATTTCTTCAACGTCGTCGAAAGAAAAAACGGTCTTGGAGCCCTGTTACAGATCTCGGCCTCTCCTACCCCTATCGGCTCATGGCTTCGCGTCGTCGACCTCATCCAGTTTCTCCGCCACTTCTTCACAATTCTTGACGCGCCCTGCCTCCTCCACGCGCCATCCCGTGCCCGGCAACTCCATTTCCACCTCATTGTCCTCCTCCGTCCGGTTCGCGGTCGACCTCCCGAGCGCTCCCAGCCGTTCGATGACGGTCAAGAAACCGTTCACGGACAACGGCAAGAACCAAAGCAACGGCCAGAAGAGCGGGACGCCGGTGGCTGGCACCAAGAAAGCGTGCCTCTGTTCCCCTTCGACGCACCCAGGCTCCTTCCGCTGCGCCATGCATAGGAACTCGCCGCGTGGCGGCGCTAGCCAATCGAACTCGAGCAGCCAAACGGCATCGTCGTACAACTCGAATATCAGGCTCAACTATCGAAGGTCGGCGATGAATAACTCGTTGGTGAGAATCGGAGGAGTGGAAGGGGACTTGGTGAAGCGAGCTTTGGCGGCTCTGATCAGGCCCACGGCTCACAATCAGCGGCGCCGAGCCGATTTCCAACCCAAGCCGAGCCGGCTCTCTGGCTTAAATTCACCTGTCGAAGGATCCCTGGGTGAAGAGCTCAGAAGCGGCGGATCGGTGAGAGTCGGAGATCGGGTGGAAGACTCCAGTCCTGCAAGAAATGATTGTGTCAAAATACTTAATCTTGGAATGCAAAGAGAAACTAAGACAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

27.75

Weight (kDa)

10.9

Isoelectric Point (pI)

65.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 332, 591
AccBSI CCGCTC 1 cut(s) 315
AccI GTMKAC 2 cut(s) 104, 228
AccII CGCG 5 cut(s) 98, 148, 166, 224, 409
AclWI GGATC 3 cut(s) 648, 661, 691
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 1 cut(s) 637
AcyI GRCGYC 2 cut(s) 320, 592
AfaI GTAC 1 cut(s) 458
AfeI AGCGCT 1 cut(s) 241
AfiI CCNNNNNNNGG 7 cut(s) 179, 216, 223, 329, 396, 413, 650
AgsI TTSAA 1 cut(s) 18
AjnI CCWGG 2 cut(s) 370, 657
AjuI GAANNNNNNNTTGG 4 cut(s) 491, 523, 536, 568
AluBI AGCT 2 cut(s) 551, 670
AluI AGCT 2 cut(s) 551, 670
Alw21I GWGCWC 1 cut(s) 672
AlwI GGATC 3 cut(s) 648, 661, 691
Ama87I CYCGRG 2 cut(s) 235, 433
Aor51HI AGCGCT 1 cut(s) 241
AoxI GGCC 3 cut(s) 65, 304, 569
ApeKI GCWGC 2 cut(s) 384, 438
ApoI RAATTY 1 cut(s) 637
Asp700I GAANNNNTTC 1 cut(s) 272
AspLEI GCGC 6 cut(s) 150, 168, 242, 389, 419, 594
AspS9I GGNCC 1 cut(s) 570
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 6 cut(s) 19, 523, 553, 633, 674, 700
AsuNHI GCTAGC 1 cut(s) 419
AvaI CYCGRG 2 cut(s) 235, 433
BaeGI GKGCMC 1 cut(s) 180
BamHI GGATCC 1 cut(s) 653
BanI GGYRCC 2 cut(s) 332, 591
BanII GRGCYC 2 cut(s) 51, 672
BbsI GAAGAC 1 cut(s) 717
Bbv12I GWGCWC 1 cut(s) 672
BbvI GCAGC 2 cut(s) 371, 450
BccI CCATC 1 cut(s) 177
BceAI ACGGC 5 cut(s) 234, 301, 319, 462, 591
BciT130I CCWGG 2 cut(s) 372, 659
BclI TGATCA 1 cut(s) 564
BcnI CCSGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 420
BfoI RGCGCY 3 cut(s) 243, 420, 595
BglI GCCNNNNNGGC 1 cut(s) 622
BglII AGATCT 1 cut(s) 59
BisI GCNGC 7 cut(s) 385, 407, 415, 439, 558, 590, 679
BlsI GCNGC 7 cut(s) 386, 408, 416, 440, 559, 591, 680
Bme1390I CCNGG 3 cut(s) 180, 372, 659
BmeT110I CYCGRG 2 cut(s) 235, 433
BmgT120I GGNCC 1 cut(s) 570
BmiI GGNNCC 5 cut(s) 48, 334, 376, 593, 655
BmrFI CCNGG 3 cut(s) 180, 372, 659
BmsI GCATC 1 cut(s) 458
BmtI GCTAGC 1 cut(s) 423
BoxI GACNNNNGTC 1 cut(s) 717
BpiI GAAGAC 1 cut(s) 717
BpmI CTGGAG 1 cut(s) 700
BpuMI CCSGG 1 cut(s) 180
BsaHI GRCGYC 2 cut(s) 320, 592
BsaJI CCNNGG 4 cut(s) 370, 573, 657, 658
BsaWI WCCGGW 1 cut(s) 216
BsaXI ACNNNNNCTCC 4 cut(s) 359, 389, 690, 720
Bsc4I CCNNNNNNNGG 7 cut(s) 179, 216, 223, 329, 396, 413, 650
Bse118I RCCGGY 2 cut(s) 322, 621
Bse1I ACTGG 2 cut(s) 114, 717
BseBI CCWGG 2 cut(s) 372, 659
BseDI CCNNGG 4 cut(s) 370, 573, 657, 658
BseGI GGATG 2 cut(s) 110, 169
BseLI CCNNNNNNNGG 7 cut(s) 179, 216, 223, 329, 396, 413, 650
BseMII CTCAG 1 cut(s) 685
BseNI ACTGG 2 cut(s) 114, 717
BseRI GAGGAG 3 cut(s) 148, 199, 537
BseSI GKGCMC 1 cut(s) 180
BseXI GCAGC 2 cut(s) 371, 450
BseYI CCCAGC 1 cut(s) 245
Bsh1236I CGCG 5 cut(s) 98, 148, 166, 224, 409
Bsh1285I CGRYCG 1 cut(s) 228
BshFI GGCC 3 cut(s) 67, 306, 571
BshNI GGYRCC 2 cut(s) 332, 591
BsiEI CGRYCG 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 672
BsiHKCI CYCGRG 2 cut(s) 235, 433
BsiSI CCGG 4 cut(s) 180, 217, 323, 622
BslFI GGGAC 2 cut(s) 331, 548
BslI CCNNNNNNNGG 7 cut(s) 179, 216, 223, 329, 396, 413, 650
BsmFI GGGAC 2 cut(s) 331, 548
BsmI GAATGC 1 cut(s) 765
BsnI GGCC 3 cut(s) 67, 306, 571
BsoBI CYCGRG 2 cut(s) 235, 433
Bsp1286I GDGCHC 3 cut(s) 51, 180, 672
Bsp143I GATC 5 cut(s) 59, 564, 653, 683, 700
BspANI GGCC 3 cut(s) 67, 306, 571
BspCNI CTCAG 1 cut(s) 684
BspFNI CGCG 5 cut(s) 98, 148, 166, 224, 409
BspLI GGNNCC 5 cut(s) 48, 334, 376, 593, 655
BspOI GCTAGC 1 cut(s) 423
BspPI GGATC 3 cut(s) 648, 661, 691
BspQI GCTCTTC 2 cut(s) 305, 660
BspT107I GGYRCC 2 cut(s) 332, 591
BsrBI CCGCTC 1 cut(s) 315
BsrFI RCCGGY 2 cut(s) 322, 621
BsrI ACTGG 2 cut(s) 114, 717
BssAI RCCGGY 2 cut(s) 322, 621
BssECI CCNNGG 4 cut(s) 370, 573, 657, 658
BssMI GATC 5 cut(s) 59, 564, 653, 683, 700
BssNI GRCGYC 2 cut(s) 320, 592
Bst2UI CCWGG 2 cut(s) 372, 659
Bst4CI ACNGT 3 cut(s) 40, 262, 273
Bst6I CTCTTC 2 cut(s) 305, 660
BstACI GRCGYC 2 cut(s) 320, 592
BstC8I GCNNGC 5 cut(s) 331, 346, 421, 549, 623
BstDEI CTNAG 2 cut(s) 671, 774
BstDSI CCRYGG 1 cut(s) 573
BstENI CCTNNNNNAGG 1 cut(s) 648
BstF5I GGATG 2 cut(s) 110, 169
BstFNI CGCG 5 cut(s) 98, 148, 166, 224, 409
BstH2I RGCGCY 3 cut(s) 243, 420, 595
BstHHI GCGC 6 cut(s) 150, 168, 242, 389, 419, 594
BstKTI GATC 5 cut(s) 62, 567, 656, 686, 703
BstMBI GATC 5 cut(s) 59, 564, 653, 683, 700
BstMCI CGRYCG 1 cut(s) 228
BstMWI GCNNNNNNNGC 6 cut(s) 246, 312, 381, 420, 557, 622
BstNI CCWGG 2 cut(s) 372, 659
BstPAI GACNNNNGTC 1 cut(s) 717
BstSCI CCNGG 3 cut(s) 178, 370, 657
BstSLI GKGCMC 1 cut(s) 180
BstUI CGCG 5 cut(s) 98, 148, 166, 224, 409
BstV1I GCAGC 2 cut(s) 371, 450
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 2 cut(s) 59, 653
BstYI RGATCY 2 cut(s) 59, 653
BsuRI GGCC 3 cut(s) 67, 306, 571
BtgI CCRYGG 1 cut(s) 573
BtgZI GCGATG 1 cut(s) 509
BtsCI GGATG 2 cut(s) 110, 169
Cac8I GCNNGC 5 cut(s) 331, 346, 421, 549, 623
CfoI GCGC 6 cut(s) 150, 168, 242, 389, 419, 594
Cfr10I RCCGGY 2 cut(s) 322, 621
Cfr13I GGNCC 1 cut(s) 570
CseI GACGC 4 cut(s) 87, 154, 328, 373
Csp6I GTAC 1 cut(s) 457
CviAII CATG 2 cut(s) 89, 391
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 2 cut(s) 671, 774
DinI GGCGCC 1 cut(s) 593
DpnI GATC 5 cut(s) 61, 566, 655, 685, 702
DpnII GATC 5 cut(s) 59, 564, 653, 683, 700
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 2 cut(s) 305, 660
EarI CTCTTC 2 cut(s) 305, 660
EciI GGCGGA 2 cut(s) 112, 696
Ecl136II GAGCTC 1 cut(s) 670
Eco24I GRGCYC 2 cut(s) 51, 672
Eco47III AGCGCT 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 670
Eco88I CYCGRG 2 cut(s) 235, 433
EcoICRI GAGCTC 1 cut(s) 670
EcoNI CCTNNNNNAGG 1 cut(s) 648
EcoRII CCWGG 2 cut(s) 370, 657
EcoT22I ATGCAT 1 cut(s) 396
EcoT38I GRGCYC 2 cut(s) 51, 672
EgeI GGCGCC 1 cut(s) 593
EheI GGCGCC 1 cut(s) 593
FaeI CATG 2 cut(s) 92, 394
FaiI YATR 3 cut(s) 90, 392, 396
FaqI GGGAC 2 cut(s) 331, 548
FatI CATG 2 cut(s) 88, 390
FauI CCCGC 1 cut(s) 308
FbaI TGATCA 1 cut(s) 564
FblI GTMKAC 2 cut(s) 104, 228
Fnu4HI GCNGC 7 cut(s) 385, 407, 415, 439, 558, 590, 679
FokI GGATG 2 cut(s) 97, 156
FriOI GRGCYC 2 cut(s) 51, 672
Fsp4HI GCNGC 7 cut(s) 385, 407, 415, 439, 558, 590, 679
FspBI CTAG 1 cut(s) 420
GlaI GCGC 6 cut(s) 149, 167, 241, 388, 418, 593
GluI GCNGC 7 cut(s) 385, 407, 415, 439, 558, 590, 679
GsaI CCCAGC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 700
HaeII RGCGCY 3 cut(s) 243, 420, 595
HaeIII GGCC 3 cut(s) 67, 306, 571
HapII CCGG 4 cut(s) 180, 217, 323, 622
HgaI GACGC 4 cut(s) 87, 154, 328, 373
HhaI GCGC 6 cut(s) 150, 168, 242, 389, 419, 594
Hin1I GRCGYC 2 cut(s) 320, 592
Hin1II CATG 2 cut(s) 92, 394
Hin6I GCGC 6 cut(s) 148, 166, 240, 387, 417, 592
HinP1I GCGC 6 cut(s) 148, 166, 240, 387, 417, 592
HincII GTYRAC 2 cut(s) 105, 229
HindII GTYRAC 2 cut(s) 105, 229
HinfI GANTC 3 cut(s) 516, 693, 713
HpaII CCGG 4 cut(s) 180, 217, 323, 622
HphI GGTGA 6 cut(s) 19, 523, 553, 633, 674, 700
Hpy166II GTNNAC 3 cut(s) 105, 229, 276
Hpy188I TCNGA 4 cut(s) 521, 564, 674, 698
Hpy188III TCNNGA 3 cut(s) 142, 235, 265
Hpy8I GTNNAC 3 cut(s) 105, 229, 276
Hpy99I CGWCG 6 cut(s) 25, 28, 103, 106, 367, 457
HpyAV CCTTC 5 cut(s) 369, 388, 480, 524, 644
HpyCH4III ACNGT 3 cut(s) 40, 262, 273
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 3 cut(s) 394, 725, 763
HpyF10VI GCNNNNNNNGC 6 cut(s) 246, 312, 381, 420, 557, 622
HpyF3I CTNAG 2 cut(s) 671, 774
HpySE526I ACGT 1 cut(s) 20
Hsp92I GRCGYC 2 cut(s) 320, 592
Hsp92II CATG 2 cut(s) 92, 394
HspAI GCGC 6 cut(s) 148, 166, 240, 387, 417, 592
KasI GGCGCC 1 cut(s) 591
KroI GCCGGC 1 cut(s) 621
KroNI GCCGGC 1 cut(s) 623
Ksp22I TGATCA 1 cut(s) 564
Kzo9I GATC 5 cut(s) 59, 564, 653, 683, 700
LguI GCTCTTC 2 cut(s) 305, 660
LmnI GCTCC 3 cut(s) 46, 247, 380
Lsp1109I GCAGC 2 cut(s) 371, 450
LweI GCATC 1 cut(s) 458
MaeI CTAG 1 cut(s) 420
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 53
MalI GATC 5 cut(s) 61, 566, 655, 685, 702
MbiI CCGCTC 1 cut(s) 315
MboI GATC 5 cut(s) 59, 564, 653, 683, 700
MboII GAAGA 5 cut(s) 6, 123, 322, 677, 722
MflI RGATCY 2 cut(s) 59, 653
MhlI GDGCHC 3 cut(s) 51, 180, 672
MluCI AATT 2 cut(s) 137, 637
Mly113I GGCGCC 1 cut(s) 592
MlyI GAGTC 2 cut(s) 702, 707
MmeI TCCRAC 2 cut(s) 631, 676
Mph1103I ATGCAT 1 cut(s) 396
MroNI GCCGGC 1 cut(s) 621
MroXI GAANNNNTTC 1 cut(s) 272
MseI TTAA 2 cut(s) 635, 750
MspA1I CMGCKG 2 cut(s) 384, 589
MspI CCGG 4 cut(s) 180, 217, 323, 622
MspR9I CCNGG 3 cut(s) 180, 372, 659
Mva1269I GAATGC 1 cut(s) 765
MvaI CCWGG 2 cut(s) 372, 659
MvnI CGCG 5 cut(s) 98, 148, 166, 224, 409
MwoI GCNNNNNNNGC 6 cut(s) 246, 312, 381, 420, 557, 622
NaeI GCCGGC 1 cut(s) 623
NarI GGCGCC 1 cut(s) 592
NciI CCSGG 1 cut(s) 180
NdeII GATC 5 cut(s) 59, 564, 653, 683, 700
NgoMIV GCCGGC 1 cut(s) 621
NheI GCTAGC 1 cut(s) 419
NlaIII CATG 2 cut(s) 92, 394
NlaIV GGNNCC 5 cut(s) 48, 334, 376, 593, 655
NmeAIII GCCGAG 3 cut(s) 43, 620, 642
NsiI ATGCAT 1 cut(s) 396
PaeR7I CTCGAG 1 cut(s) 433
PasI CCCWGGG 1 cut(s) 658
PciSI GCTCTTC 2 cut(s) 305, 660
PcsI WCGNNNNNNNCGW 2 cut(s) 452, 461
PctI GAATGC 1 cut(s) 765
PdiI GCCGGC 1 cut(s) 623
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 1 cut(s) 516
PkrI GCNGC 7 cut(s) 386, 408, 416, 440, 559, 591, 680
PleI GAGTC 2 cut(s) 701, 707
PluTI GGCGCC 1 cut(s) 595
PpsI GAGTC 2 cut(s) 701, 707
PshAI GACNNNNGTC 1 cut(s) 717
Psp124BI GAGCTC 1 cut(s) 672
Psp6I CCWGG 2 cut(s) 370, 657
PspFI CCCAGC 1 cut(s) 245
PspGI CCWGG 2 cut(s) 370, 657
PspN4I GGNNCC 5 cut(s) 48, 334, 376, 593, 655
PspPI GGNCC 1 cut(s) 570
PspXI VCTCGAGB 1 cut(s) 433
PsuI RGATCY 2 cut(s) 59, 653
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SacI GAGCTC 1 cut(s) 672
SalI GTCGAC 2 cut(s) 103, 227
SapI GCTCTTC 2 cut(s) 305, 660
SaqAI TTAA 2 cut(s) 635, 750
SatI GCNGC 7 cut(s) 385, 407, 415, 439, 558, 590, 679
Sau3AI GATC 5 cut(s) 59, 564, 653, 683, 700
Sau96I GGNCC 1 cut(s) 570
SchI GAGTC 2 cut(s) 702, 707
ScrFI CCNGG 3 cut(s) 180, 372, 659
SduI GDGCHC 3 cut(s) 51, 180, 672
SetI ASST 8 cut(s) 23, 110, 200, 234, 491, 553, 646, 672
SfaNI GCATC 1 cut(s) 458
SfoI GGCGCC 1 cut(s) 593
Sfr274I CTCGAG 1 cut(s) 433
SgrAI CRCCGGYG 1 cut(s) 322
SlaI CTCGAG 1 cut(s) 433
SmlI CTYRAG 1 cut(s) 433
SmoI CTYRAG 1 cut(s) 433
Sse9I AATT 2 cut(s) 137, 637
SspDI GGCGCC 1 cut(s) 591
SspMI CTAG 1 cut(s) 420
SstI GAGCTC 1 cut(s) 672
StyD4I CCNGG 3 cut(s) 178, 370, 657
TaaI ACNGT 3 cut(s) 40, 262, 273
TaiI ACGT 1 cut(s) 23
TasI AATT 2 cut(s) 137, 637
TauI GCSGC 5 cut(s) 409, 417, 560, 592, 681
TfiI GAWTC 1 cut(s) 516
Tru1I TTAA 2 cut(s) 635, 750
Tru9I TTAA 2 cut(s) 635, 750
TseI GCWGC 2 cut(s) 384, 438
TspDTI ATGAA 1 cut(s) 512
TspGWI ACGGA 2 cut(s) 202, 293
XagI CCTNNNNNAGG 1 cut(s) 648
XapI RAATTY 1 cut(s) 637
XhoI CTCGAG 1 cut(s) 433
XmiI GTMKAC 2 cut(s) 104, 228
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 1 cut(s) 420
Zsp2I ATGCAT 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.