Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001520

Physical Location & Seq

Genomic Coordinates Forward (+)

1008321 .. 1009337

Gene Structure 1017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCAGCAATTTCTAGAAAGTCGTCAGCAACCGGACCGGTCCTCCGGTCCACCGCCTCACCCTCACTGTCCGGGAGATTCTACAACTCCCACTCCTCCGCCTCCACCGGCTTCGCCTCCTCCACATCCAGCTTCTCCTCCCGCACCGCCGGTGGTTTCTTCACACGCGCCGCCTCTCCCCCGCGCGTGAGCCTCGCCAGGCCCTCCCCTTCCGCACAGTCCGTCCGATTCTCCCTCCTCGACCGCCCTACCTCCCCTAGCCGCTCCATCTCCGTCTCGCCTCACGGCTCCGGCTGCCACCACCGGAGCGCGATGAAGAAGCAGATCAACACCACCAAGCGGACCTGTATGTGCTCCCCTACTTCTCACCCTGGCTCCTTCCGCTGCAGCCTACACAAGAACACGTCGGCGAGCTCCTCCTCCGCCGTGCCGTACTCGCAGAACCGCCTCAACGCGCGCAGATCGGCGATGACGAACTCGCTCGTCAGGATCGGCGGCGTCGAAGGCGAGATCATGAAGCGCGCCTTGGCCGCTCTCATCCGTCCCTCCTCCCACAGCCAGCGCCGCCGCGCCGACTTCCGCCCCCGGCCCAGCCGGCTCTCAAAGTGCAGCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

21.89

Weight (kDa)

11.97

Isoelectric Point (pI)

78.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11090 AT5G25280 AT5G25280 AT5G25280
fragaria_vesca	FvH4_1g01930 FvH4_6g29080 FvH4_6g29090
malus_domestica	MD00G1046800.v1.1 MD08G1152900.v1.1 MD13G1239000.v1.1 MD15G1129600.v1.1 MD15G1161800.v1.1 MD17G1218000.v1.1
prunus_persica	Prupe.1G485100_v2.0.a1 Prupe.1G485100_v2.0.a1 Prupe.3G093600_v2.0.a1 Prupe.7G256900_v2.0.a1 Prupe.7G256900_v2.0.a1
pyrus_communis	pycom02g01570 pycom08g13180 pycom15g11680 pycom15g14540 pycom17g22230
rosa_chinensis	RchiOBHm_Chr2g0086961 RchiOBHm_Chr2g0134271 RchiOBHm_Chr6g0297351
rosa_laevigata	RLG00000011609 RLG00000015818 RLG00000019383
rosa_multiflora	Rmu_co8148184.1_g000001 Rmu_co8308813.1_g000001 Rmu_sc0000418.1_g000003 Rmu_sc0004535.1_g000011 Rmu_sc0009060.1_g000002 Rmu_sc0030045.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110390 Rroxscaffold_7G00170620
rosa_rugosa	Rorug01G0065600 Rorug01G0471100 Rorug02G0315800 Rorug06G0270800
rosa_samantha	Rh2AG023700 Rh2AG368400 Rh2BG374400 Rh2CG352100 Rh2DG024400 Rh2DG391700 Rh6DG382300
rosa_wichuraiana	Rw2G001870 Rw2G030020 Rw6G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	264, 533
AccII	CGCG	8 cut(s)	168, 184, 186, 311, 455, 457, 522, 570
AclWI	GGATC	1 cut(s)	497
AcoI	YGGCCR	1 cut(s)	528
AcyI	GRCGYC	1 cut(s)	498
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	1 cut(s)	339
AflIII	ACRYGT	1 cut(s)	402
AgeI	ACCGGT	1 cut(s)	37
AjiI	CACGTC	1 cut(s)	405
AjnI	CCWGG	2 cut(s)	197, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AluBI	AGCT	2 cut(s)	132, 414
AluI	AGCT	2 cut(s)	132, 414
Alw21I	GWGCWC	2 cut(s)	356, 416
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	1 cut(s)	497
AoxI	GGCC	3 cut(s)	200, 528, 587
ApeKI	GCWGC	5 cut(s)	5, 294, 384, 387, 609
AsiGI	ACCGGT	1 cut(s)	37
AspLEI	GCGC	9 cut(s)	170, 186, 311, 457, 459, 522, 524, 564, 572
AspS9I	GGNCC	6 cut(s)	35, 40, 48, 201, 342, 588
AsuC2I	CCSGG	2 cut(s)	73, 586
AsuHPI	GGTGA	2 cut(s)	51, 359
AvaII	GGWCC	4 cut(s)	35, 40, 48, 342
BanII	GRGCYC	1 cut(s)	416
Bbv12I	GWGCWC	2 cut(s)	356, 416
BbvI	GCAGC	4 cut(s)	17, 281, 371, 399
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	3 cut(s)	301, 410, 415
BciT130I	CCWGG	2 cut(s)	199, 372
BcnI	CCSGG	2 cut(s)	73, 586
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	2 cut(s)	15, 258
BfmI	CTRYAG	1 cut(s)	385
BfoI	RGCGCY	1 cut(s)	565
BglI	GCCNNNNNGGC	1 cut(s)	595
Bme1390I	CCNGG	4 cut(s)	73, 199, 372, 586
Bme18I	GGWCC	4 cut(s)	35, 40, 48, 342
BmgBI	CACGTC	1 cut(s)	405
BmgT120I	GGNCC	6 cut(s)	35, 40, 48, 201, 342, 588
BmiI	GGNNCC	2 cut(s)	289, 376
BmrFI	CCNGG	4 cut(s)	73, 199, 372, 586
BpuMI	CCSGG	2 cut(s)	73, 586
BsaHI	GRCGYC	1 cut(s)	498
BsaJI	CCNNGG	3 cut(s)	370, 525, 584
BsaWI	WCCGGW	4 cut(s)	32, 37, 45, 303
BsaXI	ACNNNNNCTCC	6 cut(s)	27, 57, 77, 107, 359, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
Bse118I	RCCGGY	4 cut(s)	37, 107, 149, 594
BseBI	CCWGG	2 cut(s)	199, 372
BseDI	CCNNGG	3 cut(s)	370, 525, 584
BseGI	GGATG	2 cut(s)	125, 537
BseLI	CCNNNNNNNGG	1 cut(s)	339
BsePI	GCGCGC	2 cut(s)	455, 520
BseRI	GAGGAG	7 cut(s)	85, 109, 127, 227, 406, 409, 538
BseXI	GCAGC	4 cut(s)	17, 281, 371, 399
BseYI	CCCAGC	1 cut(s)	590
Bsh1236I	CGCG	8 cut(s)	168, 184, 186, 311, 455, 457, 522, 570
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	3 cut(s)	202, 530, 589
BshTI	ACCGGT	1 cut(s)	37
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	2 cut(s)	356, 416
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	1 cut(s)	339
BsmAI	GTCTC	1 cut(s)	280
BsmBI	CGTCTC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	528
BsnI	GGCC	3 cut(s)	202, 530, 589
Bsp1286I	GDGCHC	2 cut(s)	356, 416
Bsp143I	GATC	4 cut(s)	324, 461, 489, 510
BspANI	GGCC	3 cut(s)	202, 530, 589
BspFNI	CGCG	8 cut(s)	168, 184, 186, 311, 455, 457, 522, 570
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	2 cut(s)	289, 376
BspMAI	CTGCAG	1 cut(s)	389
BspPI	GGATC	1 cut(s)	497
BsrBI	CCGCTC	2 cut(s)	264, 533
BsrFI	RCCGGY	4 cut(s)	37, 107, 149, 594
BssAI	RCCGGY	4 cut(s)	37, 107, 149, 594
BssECI	CCNNGG	3 cut(s)	370, 525, 584
BssHII	GCGCGC	2 cut(s)	455, 520
BssMI	GATC	4 cut(s)	324, 461, 489, 510
BssNI	GRCGYC	1 cut(s)	498
BssT1I	CCWWGG	1 cut(s)	525
Bst2UI	CCWGG	2 cut(s)	199, 372
Bst4CI	ACNGT	2 cut(s)	69, 219
BstACI	GRCGYC	1 cut(s)	498
BstC8I	GCNNGC	5 cut(s)	412, 457, 522, 560, 596
BstF5I	GGATG	2 cut(s)	125, 537
BstFNI	CGCG	8 cut(s)	168, 184, 186, 311, 455, 457, 522, 570
BstH2I	RGCGCY	1 cut(s)	565
BstHHI	GCGC	9 cut(s)	170, 186, 311, 457, 459, 522, 524, 564, 572
BstKTI	GATC	4 cut(s)	327, 464, 492, 513
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	4 cut(s)	324, 461, 489, 510
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	7 cut(s)	294, 381, 436, 504, 530, 564, 595
BstNI	CCWGG	2 cut(s)	199, 372
BstSCI	CCNGG	4 cut(s)	71, 197, 370, 584
BstSFI	CTRYAG	1 cut(s)	385
BstUI	CGCG	8 cut(s)	168, 184, 186, 311, 455, 457, 522, 570
BstV1I	GCAGC	4 cut(s)	17, 281, 371, 399
BsuRI	GGCC	3 cut(s)	202, 530, 589
BtgZI	GCGATG	2 cut(s)	326, 482
BtrI	CACGTC	1 cut(s)	405
BtsCI	GGATG	2 cut(s)	125, 537
BtsIMutI	CAGTG	1 cut(s)	65
Cac8I	GCNNGC	5 cut(s)	412, 457, 522, 560, 596
CciI	TCATGA	1 cut(s)	513
CfoI	GCGC	9 cut(s)	170, 186, 311, 457, 459, 522, 524, 564, 572
Cfr10I	RCCGGY	4 cut(s)	37, 107, 149, 594
Cfr13I	GGNCC	6 cut(s)	35, 40, 48, 201, 342, 588
CpoI	CGGWCCG	1 cut(s)	35
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	433
CspAI	ACCGGT	1 cut(s)	37
CspI	CGGWCCG	1 cut(s)	35
CviAII	CATG	1 cut(s)	514
CviQI	GTAC	1 cut(s)	433
DpnI	GATC	4 cut(s)	326, 463, 491, 512
DpnII	GATC	4 cut(s)	324, 461, 489, 510
EaeI	YGGCCR	1 cut(s)	528
EciI	GGCGGA	3 cut(s)	88, 412, 569
Ecl136II	GAGCTC	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	525
Eco24I	GRGCYC	1 cut(s)	416
Eco47I	GGWCC	4 cut(s)	35, 40, 48, 342
Eco53kI	GAGCTC	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	414
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	197, 370
EcoT14I	CCWWGG	1 cut(s)	525
EcoT38I	GRGCYC	1 cut(s)	416
ErhI	CCWWGG	1 cut(s)	525
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	1 cut(s)	517
FaiI	YATR	2 cut(s)	350, 515
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	1 cut(s)	513
FauI	CCCGC	2 cut(s)	149, 189
FokI	GGATG	2 cut(s)	112, 524
FriOI	GRGCYC	1 cut(s)	416
FspBI	CTAG	2 cut(s)	15, 258
GlaI	GCGC	9 cut(s)	169, 185, 310, 456, 458, 521, 523, 563, 571
GsaI	CCCAGC	1 cut(s)	594
HaeII	RGCGCY	1 cut(s)	565
HaeIII	GGCC	3 cut(s)	202, 530, 589
HgaI	GACGC	1 cut(s)	487
HhaI	GCGC	9 cut(s)	170, 186, 311, 457, 459, 522, 524, 564, 572
Hin1I	GRCGYC	1 cut(s)	498
Hin1II	CATG	1 cut(s)	517
Hin6I	GCGC	9 cut(s)	168, 184, 309, 455, 457, 520, 522, 562, 570
HinP1I	GCGC	9 cut(s)	168, 184, 309, 455, 457, 520, 522, 562, 570
HinfI	GANTC	2 cut(s)	78, 228
HphI	GGTGA	2 cut(s)	51, 359
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	3 cut(s)	15, 487, 514
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	2 cut(s)	409, 503
HpyAV	CCTTC	3 cut(s)	219, 388, 497
HpyCH4III	ACNGT	2 cut(s)	69, 219
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	2 cut(s)	387, 609
HpyF10VI	GCNNNNNNNGC	7 cut(s)	294, 381, 436, 504, 530, 564, 595
HpySE526I	ACGT	1 cut(s)	404
Hsp92I	GRCGYC	1 cut(s)	498
Hsp92II	CATG	1 cut(s)	517
HspAI	GCGC	9 cut(s)	168, 184, 309, 455, 457, 520, 522, 562, 570
KroI	GCCGGC	1 cut(s)	594
KroNI	GCCGGC	1 cut(s)	596
Kzo9I	GATC	4 cut(s)	324, 461, 489, 510
LmnI	GCTCC	6 cut(s)	269, 293, 306, 359, 380, 419
Lsp1109I	GCAGC	4 cut(s)	17, 281, 371, 399
MaeI	CTAG	2 cut(s)	15, 258
MaeII	ACGT	1 cut(s)	404
MalI	GATC	4 cut(s)	326, 463, 491, 512
MbiI	CCGCTC	2 cut(s)	264, 533
MboI	GATC	4 cut(s)	324, 461, 489, 510
MboII	GAAGA	2 cut(s)	151, 328
MhlI	GDGCHC	2 cut(s)	356, 416
MluCI	AATT	1 cut(s)	9
MroNI	GCCGGC	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	384
MspR9I	CCNGG	4 cut(s)	73, 199, 372, 586
MvaI	CCWGG	2 cut(s)	199, 372
MvnI	CGCG	8 cut(s)	168, 184, 186, 311, 455, 457, 522, 570
MwoI	GCNNNNNNNGC	7 cut(s)	294, 381, 436, 504, 530, 564, 595
NaeI	GCCGGC	1 cut(s)	596
NciI	CCSGG	2 cut(s)	73, 586
NdeII	GATC	4 cut(s)	324, 461, 489, 510
NgoMIV	GCCGGC	1 cut(s)	594
NlaIII	CATG	1 cut(s)	517
NlaIV	GGNNCC	2 cut(s)	289, 376
PagI	TCATGA	1 cut(s)	513
PauI	GCGCGC	2 cut(s)	455, 520
PcsI	WCGNNNNNNNCGW	2 cut(s)	470, 498
PdiI	GCCGGC	1 cut(s)	596
PfeI	GAWTC	2 cut(s)	78, 228
PfoI	TCCNGGA	1 cut(s)	71
PinAI	ACCGGT	1 cut(s)	37
Psp124BI	GAGCTC	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	197, 370
PspFI	CCCAGC	1 cut(s)	590
PspGI	CCWGG	2 cut(s)	197, 370
PspN4I	GGNNCC	2 cut(s)	289, 376
PspPI	GGNCC	6 cut(s)	35, 40, 48, 201, 342, 588
PstI	CTGCAG	1 cut(s)	389
PteI	GCGCGC	2 cut(s)	455, 520
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
Rsr2I	CGGWCCG	1 cut(s)	35
RsrII	CGGWCCG	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	416
Sau3AI	GATC	4 cut(s)	324, 461, 489, 510
Sau96I	GGNCC	6 cut(s)	35, 40, 48, 201, 342, 588
ScrFI	CCNGG	4 cut(s)	73, 199, 372, 586
SduI	GDGCHC	2 cut(s)	356, 416
SetI	ASST	5 cut(s)	134, 254, 347, 407, 416
SfcI	CTRYAG	1 cut(s)	385
SgrAI	CRCCGGYG	1 cut(s)	149
SinI	GGWCC	4 cut(s)	35, 40, 48, 342
Sse9I	AATT	1 cut(s)	9
SspMI	CTAG	2 cut(s)	15, 258
SstI	GAGCTC	1 cut(s)	416
StyD4I	CCNGG	4 cut(s)	71, 197, 370, 584
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	2 cut(s)	69, 219
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	2 cut(s)	240, 501
TasI	AATT	1 cut(s)	9
TauI	GCSGC	6 cut(s)	173, 264, 498, 533, 567, 570
TfiI	GAWTC	2 cut(s)	78, 228
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	5 cut(s)	5, 294, 384, 387, 609
TspDTI	ATGAA	2 cut(s)	329, 530
TspGWI	ACGGA	3 cut(s)	211, 262, 530
TspRI	CASTG	1 cut(s)	72
VpaK11BI	GGWCC	4 cut(s)	35, 40, 48, 342
XbaI	TCTAGA	1 cut(s)	14
XspI	CTAG	2 cut(s)	15, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.