RLG00000015818

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001520
Physical Location & Seq
Forward (+)
1637148 .. 1637911
764 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015818

Sequence Viewer

Length: 726 bp
ATGGCAACAGCTTCTAGAAGGTCGTCAGCAACAGGACCGGTCCTCCGGTCCACCGCCTCACCCTCACTCTCCGGAAGGTTCTACACCTCCCACTCATCCTCCTCCACCGGCTTCGCCTCCTCCACTTCCAGCTTCTCCTCCCGATCCGCTGGCGGTTTCTTTACACGCGCCGCCTCTCCCCCGCGCGTGAGCCTCGCCAGACCCTCCCCGTCCGCTCAGTCCGTCCGGTTCTCTCTCCACGACCGCCCTACCTCCCCCAGCCGCTCCATCTCCGTCTCGCCGCACGGCTCCGGCAGCCACCACCGGAGCGCGATGAAGAAGCAGGTCAACCCTAAGAGGACCTGTATGTGCTCCCCTACTTCTCACCCAGGCTCCTTCCGGTGCAGCCTACACAAGAACTGTGGCTCGCAAGTGTCGAGTTCCTCCGCCGCGCCGTACTCGCAGAACCGCCTCAACGCGCGTAGATCGGCGATGACGAACTCGCTGGTCAGGATCGGCGGCGTTGAAGGCGATCTCGTGAAGCGCGCCTTGGCCGCTCTCATCCGCCCCTCCTCCCACAGCCAGCGGCGCCGTGCCGATTTCCGTCCCCGGCCCAGCCGGCTCTCCACCATGTCAAAGTGCAGTGACCCCTATTTCCAGTCGGATCCAAATATTCTTGAAACTTCCGGCAAATTGAGGCCACACGTGGCAGAATCCGGCGCTAGTGATCTGATGGATTTGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

25.7

Weight (kDa)

11.64

Isoelectric Point (pI)

81.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 567
AccBSI CCGCTC 3 cut(s) 215, 264, 536
AccII CGCG 8 cut(s) 168, 184, 186, 311, 431, 458, 460, 525
AccIII TCCGGA 1 cut(s) 71
AclWI GGATC 4 cut(s) 138, 500, 638, 651
AcoI YGGCCR 1 cut(s) 531
AcvI CACGTG 1 cut(s) 685
AcyI GRCGYC 1 cut(s) 568
AfaI GTAC 1 cut(s) 437
AflIII ACRYGT 1 cut(s) 682
AgeI ACCGGT 1 cut(s) 37
AgsI TTSAA 2 cut(s) 506, 659
AjnI CCWGG 1 cut(s) 367
AjuI GAANNNNNNNTTGG 2 cut(s) 512, 544
AluBI AGCT 2 cut(s) 11, 132
AluI AGCT 2 cut(s) 11, 132
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 4 cut(s) 138, 500, 638, 651
Aor13HI TCCGGA 1 cut(s) 71
AoxI GGCC 3 cut(s) 531, 590, 677
ApeKI GCWGC 2 cut(s) 294, 384
AsiGI ACCGGT 1 cut(s) 37
AspLEI GCGC 9 cut(s) 170, 186, 311, 433, 460, 525, 527, 570, 701
AspS9I GGNCC 5 cut(s) 35, 40, 48, 339, 591
AsuC2I CCSGG 1 cut(s) 589
AsuHPI GGTGA 2 cut(s) 51, 356
AvaII GGWCC 4 cut(s) 35, 40, 48, 339
BamHI GGATCC 1 cut(s) 643
BanI GGYRCC 1 cut(s) 567
BauI CACGAG 1 cut(s) 515
BbrPI CACGTG 1 cut(s) 685
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 2 cut(s) 306, 396
BccI CCATC 2 cut(s) 275, 706
BceAI ACGGC 3 cut(s) 301, 418, 555
BciT130I CCWGG 1 cut(s) 369
BcnI CCSGG 1 cut(s) 589
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 2 cut(s) 15, 702
BfoI RGCGCY 2 cut(s) 571, 702
BfuAI ACCTGC 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 598
BisI GCNGC 9 cut(s) 171, 262, 281, 295, 385, 429, 499, 534, 566
BlsI GCNGC 9 cut(s) 172, 263, 282, 296, 386, 430, 500, 535, 567
Bme1390I CCNGG 2 cut(s) 369, 589
Bme18I GGWCC 4 cut(s) 35, 40, 48, 339
BmgT120I GGNCC 5 cut(s) 35, 40, 48, 339, 591
BmiI GGNNCC 4 cut(s) 289, 373, 569, 645
BmrFI CCNGG 2 cut(s) 369, 589
BpuMI CCSGG 1 cut(s) 589
BsaAI YACGTR 1 cut(s) 685
BsaHI GRCGYC 1 cut(s) 568
BsaJI CCNNGG 3 cut(s) 367, 528, 587
BsaWI WCCGGW 6 cut(s) 37, 45, 71, 225, 303, 378
BsaXI ACNNNNNCTCC 6 cut(s) 27, 57, 83, 113, 356, 386
Bse118I RCCGGY 3 cut(s) 37, 107, 597
Bse1I ACTGG 1 cut(s) 637
BseAI TCCGGA 1 cut(s) 71
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 3 cut(s) 367, 528, 587
BseGI GGATG 2 cut(s) 95, 540
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 637
BsePI GCGCGC 1 cut(s) 523
BseRI GAGGAG 4 cut(s) 91, 109, 127, 541
BseXI GCAGC 2 cut(s) 306, 396
BseYI CCCAGC 2 cut(s) 257, 593
BsgI GTGCAG 2 cut(s) 403, 640
Bsh1236I CGCG 8 cut(s) 168, 184, 186, 311, 431, 458, 460, 525
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 3 cut(s) 533, 592, 679
BshNI GGYRCC 1 cut(s) 567
BshTI ACCGGT 1 cut(s) 37
BsiEI CGRYCG 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 353
BslFI GGGAC 1 cut(s) 570
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 570
BsnI GGCC 3 cut(s) 533, 592, 679
Bsp1286I GDGCHC 1 cut(s) 353
Bsp13I TCCGGA 1 cut(s) 71
Bsp143I GATC 6 cut(s) 143, 464, 492, 511, 643, 706
BspANI GGCC 3 cut(s) 533, 592, 679
BspCNI CTCAG 1 cut(s) 229
BspEI TCCGGA 1 cut(s) 71
BspFNI CGCG 8 cut(s) 168, 184, 186, 311, 431, 458, 460, 525
BspLI GGNNCC 4 cut(s) 289, 373, 569, 645
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 4 cut(s) 138, 500, 638, 651
BspT107I GGYRCC 1 cut(s) 567
BsrBI CCGCTC 3 cut(s) 215, 264, 536
BsrFI RCCGGY 3 cut(s) 37, 107, 597
BsrI ACTGG 1 cut(s) 637
BssAI RCCGGY 3 cut(s) 37, 107, 597
BssECI CCNNGG 3 cut(s) 367, 528, 587
BssHII GCGCGC 1 cut(s) 523
BssMI GATC 6 cut(s) 143, 464, 492, 511, 643, 706
BssNI GRCGYC 1 cut(s) 568
BssSI CACGAG 1 cut(s) 515
BssT1I CCWWGG 1 cut(s) 528
Bst2BI CACGAG 1 cut(s) 515
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 401
BstACI GRCGYC 1 cut(s) 568
BstBAI YACGTR 1 cut(s) 685
BstC8I GCNNGC 5 cut(s) 151, 407, 525, 563, 599
BstDEI CTNAG 2 cut(s) 216, 333
BstF5I GGATG 2 cut(s) 95, 540
BstFNI CGCG 8 cut(s) 168, 184, 186, 311, 431, 458, 460, 525
BstH2I RGCGCY 2 cut(s) 571, 702
BstHHI GCGC 9 cut(s) 170, 186, 311, 433, 460, 525, 527, 570, 701
BstKTI GATC 6 cut(s) 146, 467, 495, 514, 646, 709
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 6 cut(s) 143, 464, 492, 511, 643, 706
BstMCI CGRYCG 1 cut(s) 244
BstMWI GCNNNNNNNGC 6 cut(s) 294, 439, 507, 533, 567, 598
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 2 cut(s) 367, 587
BstUI CGCG 8 cut(s) 168, 184, 186, 311, 431, 458, 460, 525
BstV1I GCAGC 2 cut(s) 306, 396
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
BsuRI GGCC 3 cut(s) 533, 592, 679
BtgZI GCGATG 2 cut(s) 326, 485
BtsCI GGATG 2 cut(s) 95, 540
BtsI GCAGTG 1 cut(s) 628
BtsIMutI CAGTG 1 cut(s) 628
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 5 cut(s) 151, 407, 525, 563, 599
CfoI GCGC 9 cut(s) 170, 186, 311, 433, 460, 525, 527, 570, 701
Cfr10I RCCGGY 3 cut(s) 37, 107, 597
Cfr13I GGNCC 5 cut(s) 35, 40, 48, 339, 591
Csp6I GTAC 1 cut(s) 436
CspAI ACCGGT 1 cut(s) 37
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviAII CATG 1 cut(s) 610
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 2 cut(s) 216, 333
DinI GGCGCC 1 cut(s) 569
DpnI GATC 6 cut(s) 145, 466, 494, 513, 645, 708
DpnII GATC 6 cut(s) 143, 464, 492, 511, 643, 706
EaeI YGGCCR 1 cut(s) 531
EciI GGCGGA 2 cut(s) 415, 533
Eco130I CCWWGG 1 cut(s) 528
Eco47I GGWCC 4 cut(s) 35, 40, 48, 339
Eco72I CACGTG 1 cut(s) 685
EcoO109I RGGNCCY 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 528
EgeI GGCGCC 1 cut(s) 569
EheI GGCGCC 1 cut(s) 569
ErhI CCWWGG 1 cut(s) 528
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 1 cut(s) 613
FaiI YATR 3 cut(s) 347, 611, 724
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FaqI GGGAC 1 cut(s) 570
FatI CATG 1 cut(s) 609
FauI CCCGC 1 cut(s) 189
Fnu4HI GCNGC 9 cut(s) 171, 262, 281, 295, 385, 429, 499, 534, 566
FokI GGATG 2 cut(s) 82, 527
Fsp4HI GCNGC 9 cut(s) 171, 262, 281, 295, 385, 429, 499, 534, 566
FspBI CTAG 2 cut(s) 15, 702
GlaI GCGC 9 cut(s) 169, 185, 310, 432, 459, 524, 526, 569, 700
GluI GCNGC 9 cut(s) 171, 262, 281, 295, 385, 429, 499, 534, 566
GsaI CCCAGC 2 cut(s) 261, 597
HaeII RGCGCY 2 cut(s) 571, 702
HaeIII GGCC 3 cut(s) 533, 592, 679
HhaI GCGC 9 cut(s) 170, 186, 311, 433, 460, 525, 527, 570, 701
Hin1I GRCGYC 1 cut(s) 568
Hin1II CATG 1 cut(s) 613
Hin6I GCGC 9 cut(s) 168, 184, 309, 431, 458, 523, 525, 568, 699
HinP1I GCGC 9 cut(s) 168, 184, 309, 431, 458, 523, 525, 568, 699
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 1 cut(s) 692
HphI GGTGA 2 cut(s) 51, 356
Hpy166II GTNNAC 2 cut(s) 51, 328
Hpy188I TCNGA 2 cut(s) 643, 711
Hpy188III TCNNGA 6 cut(s) 15, 72, 141, 490, 517, 656
Hpy8I GTNNAC 2 cut(s) 51, 328
HpyAV CCTTC 4 cut(s) 12, 69, 385, 500
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4IV ACGT 1 cut(s) 684
HpyCH4V TGCA 2 cut(s) 384, 621
HpyF10VI GCNNNNNNNGC 6 cut(s) 294, 439, 507, 533, 567, 598
HpyF3I CTNAG 2 cut(s) 216, 333
HpySE526I ACGT 1 cut(s) 684
Hsp92I GRCGYC 1 cut(s) 568
Hsp92II CATG 1 cut(s) 613
HspAI GCGC 9 cut(s) 168, 184, 309, 431, 458, 523, 525, 568, 699
KasI GGCGCC 1 cut(s) 567
Kpn2I TCCGGA 1 cut(s) 71
KroI GCCGGC 1 cut(s) 597
KroNI GCCGGC 1 cut(s) 599
Kzo9I GATC 6 cut(s) 143, 464, 492, 511, 643, 706
LmnI GCTCC 5 cut(s) 269, 293, 306, 356, 377
Lsp1109I GCAGC 2 cut(s) 306, 396
MaeI CTAG 2 cut(s) 15, 702
MaeII ACGT 1 cut(s) 684
MaeIII GTNAC 1 cut(s) 623
MalI GATC 6 cut(s) 145, 466, 494, 513, 645, 708
MbiI CCGCTC 3 cut(s) 215, 264, 536
MboI GATC 6 cut(s) 143, 464, 492, 511, 643, 706
MboII GAAGA 1 cut(s) 328
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 1 cut(s) 671
Mly113I GGCGCC 1 cut(s) 568
MmeI TCCRAC 1 cut(s) 621
MroI TCCGGA 1 cut(s) 71
MroNI GCCGGC 1 cut(s) 597
MspA1I CMGCKG 2 cut(s) 149, 565
MspR9I CCNGG 2 cut(s) 369, 589
MvaI CCWGG 1 cut(s) 369
MvnI CGCG 8 cut(s) 168, 184, 186, 311, 431, 458, 460, 525
MwoI GCNNNNNNNGC 6 cut(s) 294, 439, 507, 533, 567, 598
NaeI GCCGGC 1 cut(s) 599
NarI GGCGCC 1 cut(s) 568
NciI CCSGG 1 cut(s) 589
NdeII GATC 6 cut(s) 143, 464, 492, 511, 643, 706
NgoMIV GCCGGC 1 cut(s) 597
NlaIII CATG 1 cut(s) 613
NlaIV GGNNCC 4 cut(s) 289, 373, 569, 645
NmuCI GTSAC 1 cut(s) 623
PauI GCGCGC 1 cut(s) 523
PcsI WCGNNNNNNNCGW 2 cut(s) 413, 473
PdiI GCCGGC 1 cut(s) 599
PfeI GAWTC 1 cut(s) 692
PinAI ACCGGT 1 cut(s) 37
PkrI GCNGC 9 cut(s) 172, 263, 282, 296, 386, 430, 500, 535, 567
PluTI GGCGCC 1 cut(s) 571
PmaCI CACGTG 1 cut(s) 685
PmlI CACGTG 1 cut(s) 685
Ppu21I YACGTR 1 cut(s) 685
PpuMI RGGWCCY 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 367
PspCI CACGTG 1 cut(s) 685
PspFI CCCAGC 2 cut(s) 257, 593
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 4 cut(s) 289, 373, 569, 645
PspPI GGNCC 5 cut(s) 35, 40, 48, 339, 591
PspPPI RGGWCCY 1 cut(s) 339
PsuI RGATCY 1 cut(s) 643
PteI GCGCGC 1 cut(s) 523
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
SatI GCNGC 9 cut(s) 171, 262, 281, 295, 385, 429, 499, 534, 566
Sau3AI GATC 6 cut(s) 143, 464, 492, 511, 643, 706
Sau96I GGNCC 5 cut(s) 35, 40, 48, 339, 591
ScrFI CCNGG 2 cut(s) 369, 589
SduI GDGCHC 1 cut(s) 353
SetI ASST 9 cut(s) 13, 23, 80, 89, 134, 254, 327, 344, 687
SfoI GGCGCC 1 cut(s) 569
SinI GGWCC 4 cut(s) 35, 40, 48, 339
Sse9I AATT 1 cut(s) 671
SspDI GGCGCC 1 cut(s) 567
SspI AATATT 1 cut(s) 652
SspMI CTAG 2 cut(s) 15, 702
StyD4I CCNGG 2 cut(s) 367, 587
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 1 cut(s) 401
TaiI ACGT 1 cut(s) 687
TaqI TCGA 1 cut(s) 416
TasI AATT 1 cut(s) 671
TauI GCSGC 7 cut(s) 173, 264, 283, 431, 501, 536, 568
TfiI GAWTC 1 cut(s) 692
TscAI CASTG 1 cut(s) 628
TseFI GTSAC 1 cut(s) 623
TseI GCWGC 2 cut(s) 294, 384
Tsp45I GTSAC 1 cut(s) 623
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 3 cut(s) 211, 262, 572
TspRI CASTG 1 cut(s) 628
VpaK11BI GGWCC 4 cut(s) 35, 40, 48, 339
XbaI TCTAGA 1 cut(s) 14
XspI CTAG 2 cut(s) 15, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.