Prupe.7G256900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001520
Physical Location & Seq
Forward (+)
21499684 .. 21503097
3414 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G256900.1

Sequence Viewer

Length: 612 bp
ATGGCAGCAGCAAGTTCTAGAAGATCATCGTGCGGGCCAGTCATCCGCTCGGCTTCACCCGCTGGAAGATTCCACAACACTCAGTATTCGTCCTCCTCAGCCTTCGCCTCCTCCACTTCCAGCTTCTCTTCCCGCTCCTCCAGTTTTTTCCAGCGCGCCGCCTCTCCCACGCGCCTCAACCTCGCCAGCTCCTCACCCTCCGCCCAGTCCGTACGCTTCTCCCTTGACCGCCCCATCTCCCCGAGCCGCTCCATCTCCGTCACTCCACATGGCAACAGCAACCACCACAACGCCGTGAAGAGCCGTCAGATCAGCAACCAGAAGCGCACCTGTATGTGTTCCCCTACAAATCACCCCGGTTCGTTCCGTTGCAGCCTCCACAAGAACTTCAGCTCCCACGTGACCGCTTCGGCGCCCTACTCGCAGAACCGCCTCAACGCTCGGAGATCGGCGATGACGAACTCGCTCGTGAGAATCGGCGGCGTCGAAGGCGATCTGGTGCGGCGCGCTTTGTCCGCTCTGATTCGCCCCTCTTCCCACAGCCAAAGGAGAAGAGCCGATTTCCGGCCAAGGCCCAGCCGGCTCTCCACCATGTCCAAGTCACACGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.05

Weight (kDa)

12.0

Isoelectric Point (pI)

83.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 412
AccBSI CCGCTC 4 cut(s) 48, 135, 249, 518
AccII CGCG 3 cut(s) 156, 172, 507
AcoI YGGCCR 1 cut(s) 566
AcuI CTGAAG 1 cut(s) 373
AcvI CACGTG 1 cut(s) 400
AcyI GRCGYC 2 cut(s) 413, 483
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 564
AloI GAACNNNNNNTCC 2 cut(s) 377, 409
AluBI AGCT 3 cut(s) 123, 189, 393
AluI AGCT 3 cut(s) 123, 189, 393
Ama87I CYCGRG 1 cut(s) 241
AoxI GGCC 3 cut(s) 35, 566, 572
ApeKI GCWGC 3 cut(s) 5, 8, 372
AspLEI GCGC 7 cut(s) 156, 158, 174, 327, 415, 507, 509
AspS9I GGNCC 2 cut(s) 35, 573
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 3 cut(s) 48, 186, 344
AvaI CYCGRG 1 cut(s) 241
BanI GGYRCC 1 cut(s) 412
BauI CACGAG 2 cut(s) 467, 605
BbrPI CACGTG 1 cut(s) 400
BbvCI CCTCAGC 1 cut(s) 97
BbvI GCAGC 3 cut(s) 17, 20, 384
BccI CCATC 2 cut(s) 242, 260
BceAI ACGGC 2 cut(s) 278, 288
BcnI CCSGG 1 cut(s) 357
BfaI CTAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 416
BglI GCCNNNNNGGC 1 cut(s) 580
BisI GCNGC 7 cut(s) 6, 9, 159, 247, 373, 481, 503
BlsI GCNGC 7 cut(s) 7, 10, 160, 248, 374, 482, 504
Bme1390I CCNGG 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 35, 573
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 357
BmrI ACTGGG 1 cut(s) 199
BmuI ACTGGG 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 124
Bpu10I CCTNAGC 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 357
BsaAI YACGTR 1 cut(s) 400
BsaHI GRCGYC 2 cut(s) 413, 483
BsaJI CCNNGG 2 cut(s) 355, 569
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 1 cut(s) 564
Bse118I RCCGGY 1 cut(s) 579
Bse1I ACTGG 3 cut(s) 38, 141, 205
BseDI CCNNGG 2 cut(s) 355, 569
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 564
BseMII CTCAG 2 cut(s) 95, 111
BseNI ACTGG 3 cut(s) 38, 141, 205
BsePI GCGCGC 2 cut(s) 154, 505
BseRI GAGGAG 4 cut(s) 85, 100, 127, 181
BseXI GCAGC 3 cut(s) 17, 20, 384
BseYI CCCAGC 1 cut(s) 575
Bsh1236I CGCG 3 cut(s) 156, 172, 507
BshFI GGCC 3 cut(s) 37, 568, 574
BshNI GGYRCC 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 3 cut(s) 357, 565, 580
BsiWI CGTACG 1 cut(s) 211
BslI CCNNNNNNNGG 1 cut(s) 564
BsnI GGCC 3 cut(s) 37, 568, 574
BsoBI CYCGRG 1 cut(s) 241
Bsp143I GATC 4 cut(s) 23, 309, 446, 493
BspANI GGCC 3 cut(s) 37, 568, 574
BspCNI CTCAG 2 cut(s) 94, 110
BspFNI CGCG 3 cut(s) 156, 172, 507
BspLI GGNNCC 1 cut(s) 414
BspQI GCTCTTC 2 cut(s) 293, 547
BspT107I GGYRCC 1 cut(s) 412
BsrBI CCGCTC 4 cut(s) 48, 135, 249, 518
BsrFI RCCGGY 1 cut(s) 579
BsrI ACTGG 3 cut(s) 38, 141, 205
BssAI RCCGGY 1 cut(s) 579
BssECI CCNNGG 2 cut(s) 355, 569
BssHII GCGCGC 2 cut(s) 154, 505
BssMI GATC 4 cut(s) 23, 309, 446, 493
BssNI GRCGYC 2 cut(s) 413, 483
BssSI CACGAG 2 cut(s) 467, 605
BssT1I CCWWGG 1 cut(s) 569
Bst2BI CACGAG 2 cut(s) 467, 605
Bst6I CTCTTC 4 cut(s) 133, 293, 538, 547
BstACI GRCGYC 2 cut(s) 413, 483
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 5 cut(s) 35, 156, 187, 507, 581
BstDEI CTNAG 2 cut(s) 81, 97
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 3 cut(s) 156, 172, 507
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 7 cut(s) 156, 158, 174, 327, 415, 507, 509
BstKTI GATC 4 cut(s) 26, 312, 449, 496
BstMBI GATC 4 cut(s) 23, 309, 446, 493
BstMWI GCNNNNNNNGC 5 cut(s) 59, 421, 489, 515, 580
BstSCI CCNGG 1 cut(s) 355
BstUI CGCG 3 cut(s) 156, 172, 507
BstV1I GCAGC 3 cut(s) 17, 20, 384
BsuRI GGCC 3 cut(s) 37, 568, 574
BtgZI GCGATG 1 cut(s) 467
BtsCI GGATG 1 cut(s) 42
Cac8I GCNNGC 5 cut(s) 35, 156, 187, 507, 581
CfoI GCGC 7 cut(s) 156, 158, 174, 327, 415, 507, 509
Cfr10I RCCGGY 1 cut(s) 579
Cfr13I GGNCC 2 cut(s) 35, 573
CseI GACGC 1 cut(s) 472
Csp6I GTAC 1 cut(s) 212
CviAII CATG 2 cut(s) 269, 592
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 2 cut(s) 81, 97
DinI GGCGCC 1 cut(s) 414
DpnI GATC 4 cut(s) 25, 311, 448, 495
DpnII GATC 4 cut(s) 23, 309, 446, 493
EaeI YGGCCR 1 cut(s) 566
Eam1104I CTCTTC 4 cut(s) 133, 293, 538, 547
EarI CTCTTC 4 cut(s) 133, 293, 538, 547
EciI GGCGGA 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 569
Eco57I CTGAAG 1 cut(s) 373
Eco72I CACGTG 1 cut(s) 400
Eco88I CYCGRG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 569
EgeI GGCGCC 1 cut(s) 414
EheI GGCGCC 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 569
FaeI CATG 2 cut(s) 272, 595
FaiI YATR 3 cut(s) 270, 335, 593
FatI CATG 2 cut(s) 268, 591
FauI CCCGC 3 cut(s) 26, 67, 140
Fnu4HI GCNGC 7 cut(s) 6, 9, 159, 247, 373, 481, 503
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 7 cut(s) 6, 9, 159, 247, 373, 481, 503
FspBI CTAG 1 cut(s) 18
GlaI GCGC 7 cut(s) 155, 157, 173, 326, 414, 506, 508
GluI GCNGC 7 cut(s) 6, 9, 159, 247, 373, 481, 503
GsaI CCCAGC 1 cut(s) 579
GsuI CTGGAG 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 3 cut(s) 37, 568, 574
HapII CCGG 3 cut(s) 357, 565, 580
HgaI GACGC 1 cut(s) 472
HhaI GCGC 7 cut(s) 156, 158, 174, 327, 415, 507, 509
Hin1I GRCGYC 2 cut(s) 413, 483
Hin1II CATG 2 cut(s) 272, 595
Hin6I GCGC 7 cut(s) 154, 156, 172, 325, 413, 505, 507
HinP1I GCGC 7 cut(s) 154, 156, 172, 325, 413, 505, 507
HinfI GANTC 3 cut(s) 69, 474, 523
HpaII CCGG 3 cut(s) 357, 565, 580
HphI GGTGA 3 cut(s) 48, 186, 344
Hpy188I TCNGA 3 cut(s) 309, 444, 522
Hpy188III TCNNGA 2 cut(s) 18, 469
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 2 cut(s) 112, 482
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 1 cut(s) 372
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 421, 489, 515, 580
HpyF3I CTNAG 2 cut(s) 81, 97
HpySE526I ACGT 1 cut(s) 399
Hsp92I GRCGYC 2 cut(s) 413, 483
Hsp92II CATG 2 cut(s) 272, 595
HspAI GCGC 7 cut(s) 154, 156, 172, 325, 413, 505, 507
KasI GGCGCC 1 cut(s) 412
KroI GCCGGC 1 cut(s) 579
KroNI GCCGGC 1 cut(s) 581
Kzo9I GATC 4 cut(s) 23, 309, 446, 493
LguI GCTCTTC 2 cut(s) 293, 547
LmnI GCTCC 4 cut(s) 140, 194, 254, 398
Lsp1109I GCAGC 3 cut(s) 17, 20, 384
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 3 cut(s) 259, 400, 600
MalI GATC 4 cut(s) 25, 311, 448, 495
MbiI CCGCTC 4 cut(s) 48, 135, 249, 518
MboI GATC 4 cut(s) 23, 309, 446, 493
MboII GAAGA 6 cut(s) 33, 78, 120, 310, 525, 564
Mly113I GGCGCC 1 cut(s) 413
MroNI GCCGGC 1 cut(s) 579
MslI CAYNNNNRTG 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 3 cut(s) 357, 565, 580
MspR9I CCNGG 1 cut(s) 357
MvnI CGCG 3 cut(s) 156, 172, 507
MwoI GCNNNNNNNGC 5 cut(s) 59, 421, 489, 515, 580
NaeI GCCGGC 1 cut(s) 581
NarI GGCGCC 1 cut(s) 413
NciI CCSGG 1 cut(s) 357
NdeII GATC 4 cut(s) 23, 309, 446, 493
NgoMIV GCCGGC 1 cut(s) 579
NlaIII CATG 2 cut(s) 272, 595
NlaIV GGNNCC 1 cut(s) 414
NmeAIII GCCGAG 1 cut(s) 29
NmuCI GTSAC 3 cut(s) 259, 400, 600
PauI GCGCGC 2 cut(s) 154, 505
PciSI GCTCTTC 2 cut(s) 293, 547
PcsI WCGNNNNNNNCGW 2 cut(s) 455, 483
PdiI GCCGGC 1 cut(s) 581
PfeI GAWTC 3 cut(s) 69, 474, 523
Pfl23II CGTACG 1 cut(s) 211
PkrI GCNGC 7 cut(s) 7, 10, 160, 248, 374, 482, 504
PluTI GGCGCC 1 cut(s) 416
PmaCI CACGTG 1 cut(s) 400
PmlI CACGTG 1 cut(s) 400
Ppu21I YACGTR 1 cut(s) 400
PspCI CACGTG 1 cut(s) 400
PspFI CCCAGC 1 cut(s) 575
PspLI CGTACG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 2 cut(s) 35, 573
PteI GCGCGC 2 cut(s) 154, 505
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 332
SapI GCTCTTC 2 cut(s) 293, 547
SatI GCNGC 7 cut(s) 6, 9, 159, 247, 373, 481, 503
Sau3AI GATC 4 cut(s) 23, 309, 446, 493
Sau96I GGNCC 2 cut(s) 35, 573
ScrFI CCNGG 1 cut(s) 357
SetI ASST 6 cut(s) 125, 183, 191, 332, 395, 402
SfoI GGCGCC 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 332
SspDI GGCGCC 1 cut(s) 412
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 1 cut(s) 569
TaiI ACGT 1 cut(s) 402
TaqI TCGA 1 cut(s) 486
TauI GCSGC 4 cut(s) 161, 249, 483, 505
TfiI GAWTC 3 cut(s) 69, 474, 523
TseFI GTSAC 3 cut(s) 259, 400, 600
TseI GCWGC 3 cut(s) 5, 8, 372
Tsp45I GTSAC 3 cut(s) 259, 400, 600
TspGWI ACGGA 3 cut(s) 199, 247, 356
XbaI TCTAGA 1 cut(s) 17
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.