Rorug01G0471100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001520
Physical Location & Seq
Reverse (-)
56231846 .. 56234213
2368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0471100.1

Sequence Viewer

Length: 519 bp
ATGAATCTCAAGACTCCACAGTTCACAGGTTTCTGGGTCATCATTGATCTTGTTCTAGGTGATCAAAGTTCTGTTCTTTTCATTCATTTTTTTGCTACTGTATCTTTGTGTTCTCTGTGTTTGATTGTCTGGCTTTGTTGTTTGGTTTTTCTGGTTTTGGTGAGCAGTGAGGTGTTTAGAGCTGAATTGGTTAAATTAATGGCGGATTTGGTAGGGCCTAGATTGTACAGCTGCTGTAATTGCCGAAACCATGTTTCACTTCATGATGATATAGTTTCTAAAGCTTTTCAGGGAAAACACGGTCGAGCTTTTCTGTTCTCCCATGCGATGAATATAGTTGTTGGGGCAAAGGAAGACAGGCATCTGATGACGGGTCTGCATACTGTGGCTGACATCTCTTGCGGCGATTGCCATGAGGTGTTGGGGTGGAAGTATGAAAGAGCTTATGAGGCTTCACAGAAGTACAAGGAAGGGAAGTTCATATTTGAGAAGTCGAAAATTGTTAAGGAGGGTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.49

Weight (kDa)

7.59

Isoelectric Point (pI)

22.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 76 - 168 7.7e-13 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 203, 402
AfaI GTAC 2 cut(s) 227, 464
AloI GAACNNNNNNTCC 2 cut(s) 461, 493
AluBI AGCT 5 cut(s) 182, 231, 284, 308, 443
AluI AGCT 5 cut(s) 182, 231, 284, 308, 443
AlwNI CAGNNNCTG 1 cut(s) 234
AoxI GGCC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 231
AseI ATTAAT 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 2 cut(s) 71, 172
BbsI GAAGAC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 218
BclI TGATCA 1 cut(s) 61
BfaI CTAG 2 cut(s) 56, 219
BisI GCNGC 2 cut(s) 232, 403
BlsI GCNGC 2 cut(s) 233, 404
BmgT120I GGNCC 1 cut(s) 215
BmsI GCATC 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 360
BsaXI ACNNNNNCTCC 1 cut(s) 500
BseXI GCAGC 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 1 cut(s) 217
BsiEI CGRYCG 1 cut(s) 304
BsnI GGCC 1 cut(s) 217
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 2 cut(s) 46, 61
BspACI CCGC 2 cut(s) 203, 402
BspANI GGCC 1 cut(s) 217
BspHI TCATGA 1 cut(s) 262
BsrGI TGTACA 1 cut(s) 225
BssMI GATC 2 cut(s) 46, 61
Bst4CI ACNGT 4 cut(s) 21, 100, 302, 385
BstAUI TGTACA 1 cut(s) 225
BstKTI GATC 2 cut(s) 49, 64
BstMBI GATC 2 cut(s) 46, 61
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 3 cut(s) 240, 408, 449
BstV1I GCAGC 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 360
BsuRI GGCC 1 cut(s) 217
BtgZI GCGATG 1 cut(s) 341
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
CaiI CAGNNNCTG 1 cut(s) 234
CciI TCATGA 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 215
Csp6I GTAC 2 cut(s) 226, 463
CviAII CATG 4 cut(s) 251, 263, 323, 413
CviJI RGCY 9 cut(s) 133, 182, 217, 231, 284, 308, 389, 443, 452
CviKI_1 RGCY 9 cut(s) 133, 182, 217, 231, 284, 308, 389, 443, 452
CviQI GTAC 2 cut(s) 226, 463
DpnI GATC 2 cut(s) 48, 63
DpnII GATC 2 cut(s) 46, 61
EciI GGCGGA 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 215
FaeI CATG 4 cut(s) 254, 266, 326, 416
FatI CATG 4 cut(s) 250, 262, 322, 412
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 232, 403
Fsp4HI GCNGC 2 cut(s) 232, 403
FspBI CTAG 2 cut(s) 56, 219
GluI GCNGC 2 cut(s) 232, 403
HaeIII GGCC 1 cut(s) 217
Hin1II CATG 4 cut(s) 254, 266, 326, 416
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 2 cut(s) 4, 13
HphI GGTGA 2 cut(s) 71, 172
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 366
Hpy188III TCNNGA 2 cut(s) 10, 263
Hpy8I GTNNAC 1 cut(s) 24
HpyAV CCTTC 1 cut(s) 464
HpyCH4III ACNGT 4 cut(s) 21, 100, 302, 385
HpyCH4V TGCA 1 cut(s) 379
HpyF10VI GCNNNNNNNGC 3 cut(s) 240, 408, 449
Hsp92II CATG 4 cut(s) 254, 266, 326, 416
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 2 cut(s) 46, 61
LpnPI CCDG 6 cut(s) 12, 19, 115, 137, 275, 343
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 1 cut(s) 370
MaeI CTAG 2 cut(s) 56, 219
MalI GATC 2 cut(s) 48, 63
MboI GATC 2 cut(s) 46, 61
MboII GAAGA 1 cut(s) 365
MluCI AATT 4 cut(s) 185, 194, 238, 498
MlyI GAGTC 1 cut(s) 7
MnlI CCTC 4 cut(s) 163, 409, 442, 502
MseI TTAA 3 cut(s) 192, 197, 504
MspA1I CMGCKG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 240, 408, 449
NdeII GATC 2 cut(s) 46, 61
NlaIII CATG 4 cut(s) 254, 266, 326, 416
PagI TCATGA 1 cut(s) 262
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 233, 404
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
PshBI ATTAAT 1 cut(s) 197
PspPI GGNCC 1 cut(s) 215
PstNI CAGNNNCTG 1 cut(s) 234
PvuII CAGCTG 1 cut(s) 231
RsaI GTAC 2 cut(s) 227, 464
RsaNI GTAC 2 cut(s) 226, 463
SaqAI TTAA 3 cut(s) 192, 197, 504
SatI GCNGC 2 cut(s) 232, 403
Sau3AI GATC 2 cut(s) 46, 61
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 7
SetI ASST 9 cut(s) 31, 61, 174, 184, 233, 286, 310, 420, 445
SfaNI GCATC 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 4 cut(s) 185, 194, 238, 498
SsiI CCGC 2 cut(s) 203, 402
SspMI CTAG 2 cut(s) 56, 219
TaaI ACNGT 4 cut(s) 21, 100, 302, 385
TaqI TCGA 2 cut(s) 304, 494
TasI AATT 4 cut(s) 185, 194, 238, 498
TatI WGTACW 2 cut(s) 225, 462
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 192, 197, 504
Tru9I TTAA 3 cut(s) 192, 197, 504
TscAI CASTG 1 cut(s) 172
TseI GCWGC 1 cut(s) 231
TspDTI ATGAA 7 cut(s) 17, 70, 74, 251, 344, 450, 469
TspRI CASTG 1 cut(s) 172
VspI ATTAAT 1 cut(s) 197
XspI CTAG 2 cut(s) 56, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.