FvH4_6g29090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001520
Physical Location & Seq
Forward (+)
22442690 .. 22443799
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29090.t1

Sequence Viewer

Length: 618 bp
ATGGCGGTGATCTCTTCATCTTCGTCGATCGATAAACCCGTCTTGGAGCCCTGTTACAGACCCCGCCCCATCCTCCCCTTGTCCGCCTATGGCTTCGCTTCCGCCACCTCATCTACTTTCTCCGCCTCCTCTTCCCAATTCTTGACGCGCTCCTCCTCCTCCTCCTCCTCCACGCGCCACCCCGCGCCCCCAATCTCCTCCGTCCGCTTCGACCGGCCGAGCACTCCCGAACGTTCGATTACGATCAAGAAACCGATCGCTGACAACGCCAAGAACCAAATCAACGGCCAAAGCACCAAGAAAGCGTGCCTCTGTTCGCCTTCGACGCACCCCGGAGCCTTCCGGTGCGCCAGGCATAGGAACGCGCCACGTGTCGGTGCCAGCGAATCGAACTCGAGCAGTAAAACGGCGTCGTCGTACCATTCGAGTGTCAGGCTTAACTGCAGAAGGTCGGCGATGATTAACTCGTTGGTGAGGATCGGAGTGGAAGGTGACTTGGTGAAGCGAGCTTTGGCGGCTCTGGTCAGACCCTCGGCTTACAACCAGCGGCACCGAGCCGATTTCAAACCCAAGCCGAGCCGGCTCTCTGTTATGTCCAAAACGGCGTCGTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.07

Weight (kDa)

10.94

Isoelectric Point (pI)

62.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 377, 549
AccII CGCG 4 cut(s) 148, 175, 185, 365
AciI CCGC 9 cut(s) 5, 64, 84, 102, 123, 183, 205, 515, 547
AclI AACGTT 1 cut(s) 232
AclWI GGATC 1 cut(s) 485
AcoI YGGCCR 2 cut(s) 215, 286
AcvI CACGTG 1 cut(s) 371
AcyI GRCGYC 2 cut(s) 410, 605
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 2 cut(s) 357, 374
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 1 cut(s) 565
AjnI CCWGG 1 cut(s) 350
AjuI GAANNNNNNNTTGG 2 cut(s) 494, 526
AluBI AGCT 1 cut(s) 509
AluI AGCT 1 cut(s) 509
Alw21I GWGCWC 1 cut(s) 224
AlwI GGATC 1 cut(s) 485
Ama87I CYCGRG 1 cut(s) 394
AoxI GGCC 2 cut(s) 215, 286
AspLEI GCGC 5 cut(s) 150, 177, 187, 350, 367
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 4 cut(s) 19, 484, 503, 511
AvaI CYCGRG 1 cut(s) 394
BanI GGYRCC 2 cut(s) 377, 549
BanII GRGCYC 1 cut(s) 51
BbrPI CACGTG 1 cut(s) 371
Bbv12I GWGCWC 1 cut(s) 224
BccI CCATC 1 cut(s) 77
BceAI ACGGC 2 cut(s) 301, 423
BciT130I CCWGG 1 cut(s) 352
BcnI CCSGG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 442
BglI GCCNNNNNGGC 1 cut(s) 580
BisI GCNGC 2 cut(s) 516, 548
BlsI GCNGC 2 cut(s) 517, 549
Bme1390I CCNGG 2 cut(s) 333, 352
BmeT110I CYCGRG 1 cut(s) 394
BmiI GGNNCC 4 cut(s) 48, 337, 379, 551
BmrFI CCNGG 2 cut(s) 333, 352
BpuMI CCSGG 1 cut(s) 333
Bsa29I ATCGAT 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 371
BsaBI GATNNNNATC 1 cut(s) 242
BsaHI GRCGYC 2 cut(s) 410, 605
BsaJI CCNNGG 2 cut(s) 331, 531
BsaWI WCCGGW 1 cut(s) 342
Bsc4I CCNNNNNNNGG 2 cut(s) 357, 374
Bse118I RCCGGY 2 cut(s) 213, 579
Bse8I GATNNNNATC 1 cut(s) 242
BseBI CCWGG 1 cut(s) 352
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 331, 531
BseGI GGATG 1 cut(s) 69
BseJI GATNNNNATC 1 cut(s) 242
BseLI CCNNNNNNNGG 2 cut(s) 357, 374
BseRI GAGGAG 8 cut(s) 118, 142, 145, 148, 151, 154, 157, 187
BseX3I CGGCCG 1 cut(s) 215
Bsh1236I CGCG 4 cut(s) 148, 175, 185, 365
Bsh1285I CGRYCG 4 cut(s) 30, 214, 218, 258
BshFI GGCC 2 cut(s) 217, 288
BshNI GGYRCC 2 cut(s) 377, 549
BshVI ATCGAT 1 cut(s) 30
BsiEI CGRYCG 4 cut(s) 30, 214, 218, 258
BsiHKAI GWGCWC 1 cut(s) 224
BsiHKCI CYCGRG 1 cut(s) 394
BsiSI CCGG 4 cut(s) 214, 333, 343, 580
BslI CCNNNNNNNGG 2 cut(s) 357, 374
BsnI GGCC 2 cut(s) 217, 288
BsoBI CYCGRG 1 cut(s) 394
Bsp1286I GDGCHC 2 cut(s) 51, 224
Bsp143I GATC 5 cut(s) 9, 27, 243, 255, 477
BspACI CCGC 9 cut(s) 5, 64, 84, 102, 123, 183, 205, 515, 547
BspANI GGCC 2 cut(s) 217, 288
BspDI ATCGAT 1 cut(s) 30
BspFNI CGCG 4 cut(s) 148, 175, 185, 365
BspLI GGNNCC 4 cut(s) 48, 337, 379, 551
BspMAI CTGCAG 1 cut(s) 446
BspPI GGATC 1 cut(s) 485
BspT107I GGYRCC 2 cut(s) 377, 549
BsrFI RCCGGY 2 cut(s) 213, 579
BssAI RCCGGY 2 cut(s) 213, 579
BssECI CCNNGG 2 cut(s) 331, 531
BssMI GATC 5 cut(s) 9, 27, 243, 255, 477
BssNI GRCGYC 2 cut(s) 410, 605
Bst2UI CCWGG 1 cut(s) 352
Bst6I CTCTTC 2 cut(s) 19, 136
BstACI GRCGYC 2 cut(s) 410, 605
BstBAI YACGTR 1 cut(s) 371
BstC8I GCNNGC 4 cut(s) 307, 382, 507, 581
BstF5I GGATG 1 cut(s) 69
BstFNI CGCG 4 cut(s) 148, 175, 185, 365
BstHHI GCGC 5 cut(s) 150, 177, 187, 350, 367
BstKTI GATC 5 cut(s) 12, 30, 246, 258, 480
BstMBI GATC 5 cut(s) 9, 27, 243, 255, 477
BstMCI CGRYCG 4 cut(s) 30, 214, 218, 258
BstMWI GCNNNNNNNGC 4 cut(s) 266, 325, 515, 580
BstNI CCWGG 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 331, 350
BstSFI CTRYAG 1 cut(s) 442
BstUI CGCG 4 cut(s) 148, 175, 185, 365
BstZI CGGCCG 1 cut(s) 215
Bsu15I ATCGAT 1 cut(s) 30
BsuRI GGCC 2 cut(s) 217, 288
BsuTUI ATCGAT 1 cut(s) 30
BtgZI GCGATG 1 cut(s) 470
BtsCI GGATG 1 cut(s) 69
Cac8I GCNNGC 4 cut(s) 307, 382, 507, 581
CfoI GCGC 5 cut(s) 150, 177, 187, 350, 367
Cfr10I RCCGGY 2 cut(s) 213, 579
ClaI ATCGAT 1 cut(s) 30
CseI GACGC 4 cut(s) 154, 334, 399, 594
Csp6I GTAC 1 cut(s) 418
CviQI GTAC 1 cut(s) 418
DpnI GATC 5 cut(s) 11, 29, 245, 257, 479
DpnII GATC 5 cut(s) 9, 27, 243, 255, 477
EaeI YGGCCR 2 cut(s) 215, 286
EagI CGGCCG 1 cut(s) 215
Eam1104I CTCTTC 2 cut(s) 19, 136
EarI CTCTTC 2 cut(s) 19, 136
EciI GGCGGA 3 cut(s) 73, 91, 112
EclXI CGGCCG 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 51
Eco52I CGGCCG 1 cut(s) 215
Eco72I CACGTG 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 350
EcoT38I GRGCYC 1 cut(s) 51
FaiI YATR 3 cut(s) 90, 357, 593
FauI CCCGC 2 cut(s) 71, 190
Fnu4HI GCNGC 2 cut(s) 516, 548
FokI GGATG 1 cut(s) 56
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 2 cut(s) 516, 548
GlaI GCGC 5 cut(s) 149, 176, 186, 349, 366
GluI GCNGC 2 cut(s) 516, 548
HaeIII GGCC 2 cut(s) 217, 288
HapII CCGG 4 cut(s) 214, 333, 343, 580
HgaI GACGC 4 cut(s) 154, 334, 399, 594
HhaI GCGC 5 cut(s) 150, 177, 187, 350, 367
Hin1I GRCGYC 2 cut(s) 410, 605
Hin6I GCGC 5 cut(s) 148, 175, 185, 348, 365
HinP1I GCGC 5 cut(s) 148, 175, 185, 348, 365
HinfI GANTC 1 cut(s) 386
HpaII CCGG 4 cut(s) 214, 333, 343, 580
HphI GGTGA 4 cut(s) 19, 484, 503, 511
Hpy188I TCNGA 2 cut(s) 482, 527
Hpy188III TCNNGA 3 cut(s) 142, 227, 247
Hpy99I CGWCG 5 cut(s) 28, 328, 415, 418, 610
HpyAV CCTTC 4 cut(s) 330, 349, 441, 482
HpyCH4IV ACGT 2 cut(s) 232, 370
HpyCH4V TGCA 1 cut(s) 444
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 325, 515, 580
HpySE526I ACGT 2 cut(s) 232, 370
Hsp92I GRCGYC 2 cut(s) 410, 605
HspAI GCGC 5 cut(s) 148, 175, 185, 348, 365
KroI GCCGGC 1 cut(s) 579
KroNI GCCGGC 1 cut(s) 581
Kzo9I GATC 5 cut(s) 9, 27, 243, 255, 477
LmnI GCTCC 3 cut(s) 46, 155, 335
MaeII ACGT 2 cut(s) 232, 370
MaeIII GTNAC 2 cut(s) 53, 491
MalI GATC 5 cut(s) 11, 29, 245, 257, 479
MboI GATC 5 cut(s) 9, 27, 243, 255, 477
MboII GAAGA 3 cut(s) 6, 12, 123
MhlI GDGCHC 2 cut(s) 51, 224
MluCI AATT 1 cut(s) 137
MroNI GCCGGC 1 cut(s) 579
MseI TTAA 2 cut(s) 438, 462
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 547
MspI CCGG 4 cut(s) 214, 333, 343, 580
MspR9I CCNGG 2 cut(s) 333, 352
MvaI CCWGG 1 cut(s) 352
MvnI CGCG 4 cut(s) 148, 175, 185, 365
MwoI GCNNNNNNNGC 4 cut(s) 266, 325, 515, 580
NaeI GCCGGC 1 cut(s) 581
NciI CCSGG 1 cut(s) 333
NdeII GATC 5 cut(s) 9, 27, 243, 255, 477
NgoMIV GCCGGC 1 cut(s) 579
NlaIV GGNNCC 4 cut(s) 48, 337, 379, 551
NmeAIII GCCGAG 3 cut(s) 243, 512, 600
NmuCI GTSAC 1 cut(s) 491
PaeR7I CTCGAG 1 cut(s) 394
PcsI WCGNNNNNNNCGW 4 cut(s) 36, 381, 413, 422
PdiI GCCGGC 1 cut(s) 581
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 2 cut(s) 517, 549
Ple19I CGATCG 2 cut(s) 30, 258
PmaCI CACGTG 1 cut(s) 371
PmlI CACGTG 1 cut(s) 371
Ppu21I YACGTR 1 cut(s) 371
Psp1406I AACGTT 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 350
PspCI CACGTG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 4 cut(s) 48, 337, 379, 551
PspXI VCTCGAGB 1 cut(s) 394
PstI CTGCAG 1 cut(s) 446
PvuI CGATCG 2 cut(s) 30, 258
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 426
SaqAI TTAA 2 cut(s) 438, 462
SatI GCNGC 2 cut(s) 516, 548
Sau3AI GATC 5 cut(s) 9, 27, 243, 255, 477
ScrFI CCNGG 2 cut(s) 333, 352
SduI GDGCHC 2 cut(s) 51, 224
SetI ASST 6 cut(s) 110, 235, 373, 452, 493, 511
SfcI CTRYAG 1 cut(s) 442
Sfr274I CTCGAG 1 cut(s) 394
SlaI CTCGAG 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
Sse9I AATT 1 cut(s) 137
SsiI CCGC 9 cut(s) 5, 64, 84, 102, 123, 183, 205, 515, 547
StyD4I CCNGG 2 cut(s) 331, 350
TaiI ACGT 2 cut(s) 235, 373
TaqI TCGA 8 cut(s) 26, 30, 210, 236, 323, 389, 395, 425
TasI AATT 1 cut(s) 137
TauI GCSGC 2 cut(s) 518, 550
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 2 cut(s) 438, 462
Tru9I TTAA 2 cut(s) 438, 462
TseFI GTSAC 1 cut(s) 491
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 1 cut(s) 6
TspGWI ACGGA 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.