Prupe.3G093600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001520
Physical Location & Seq
Reverse (-)
7013574 .. 7014212
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G093600.1

Sequence Viewer

Length: 639 bp
ATGGCCGTGGCGTCGTCGAGATCAAGATCGAACACGTACTCGTGTCGCAAATCGCAGCCGTTGTTTTCCTCGTCGTCCTCGGGCTTCGCTTCGTCCACCTCCTCCAGCTTCTCCTCCGCCACGTCGACGTTCTTCAATCGCTCTGGCTCCCCCACGCGCCTCTCCGTTTACGACCGCTCGCCGTCCCAGTCGTCGTCGTCTTTGCGGTTCGAGAACCGCTCGGGCTCTCCGGGCCGTTCTATTTCGGTGCAGAACCACTTTAACCACAGCAACAAGAATAACTACAAGAACGTCCCTACCAGCAAGAAGACGTGCCTTTGTTCCCCTACGACGCACCCGGGCTCGTTCCGATGCGCCCTGCACAAGAACTCGCCACGTGGCGGAGCGGCTCACCACTTGAATAGTAACGACCAAACGTCGTCGTATCACTCGACTATCAGACTGAACTACAGAAGGTCGGCGATGAAAAACTCGCTGGTGAGAATCGGAGGGGTTGAAGGGGACTTGGTGAAGAGGGCTTTGTCGGCTCTGATCAGGCCTTCTTCGCACAGTCAGCGGCGCCGAGTTGATTTTCAGCCCAAGCCAAGCCGACTCTCCGTAATGTCCAAAGCTTCCGACGACGACGACGACGACGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.17

Weight (kDa)

10.78

Isoelectric Point (pI)

77.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 558
AccBSI CCGCTC 3 cut(s) 177, 219, 386
AccI GTMKAC 1 cut(s) 125
AccII CGCG 1 cut(s) 157
AciI CCGC 7 cut(s) 117, 175, 205, 217, 381, 386, 556
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 377
AcyI GRCGYC 2 cut(s) 11, 559
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 380
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 3 cut(s) 136, 400, 497
AhdI GACNNNNNGTC 1 cut(s) 415
AjiI CACGTC 2 cut(s) 123, 312
AluBI AGCT 2 cut(s) 108, 611
AluI AGCT 2 cut(s) 108, 611
Ama87I CYCGRG 3 cut(s) 79, 220, 337
AoxI GGCC 3 cut(s) 3, 232, 536
ApeKI GCWGC 1 cut(s) 55
AspLEI GCGC 3 cut(s) 159, 356, 561
AspS9I GGNCC 1 cut(s) 232
AsuC2I CCSGG 3 cut(s) 231, 338, 339
AsuHPI GGTGA 3 cut(s) 383, 490, 520
AvaI CYCGRG 3 cut(s) 79, 220, 337
BanI GGYRCC 1 cut(s) 558
BanII GRGCYC 2 cut(s) 227, 344
BauI CACGAG 1 cut(s) 40
BbrPI CACGTG 1 cut(s) 377
BbsI GAAGAC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 67
BceAI ACGGC 3 cut(s) 43, 166, 219
BclI TGATCA 1 cut(s) 531
BcnI CCSGG 3 cut(s) 231, 338, 339
BfmI CTRYAG 1 cut(s) 448
BfoI RGCGCY 1 cut(s) 562
BisI GCNGC 3 cut(s) 56, 387, 557
BlsI GCNGC 3 cut(s) 57, 388, 558
Bme1390I CCNGG 3 cut(s) 231, 338, 339
BmeRI GACNNNNNGTC 1 cut(s) 415
BmeT110I CYCGRG 3 cut(s) 79, 220, 337
BmgBI CACGTC 2 cut(s) 123, 312
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 148, 560
BmrFI CCNGG 3 cut(s) 231, 338, 339
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 341
BmuI ACTGGG 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 314
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BpmI CTGGAG 1 cut(s) 88
BpuMI CCSGG 3 cut(s) 231, 338, 339
BsaAI YACGTR 2 cut(s) 36, 377
BsaBI GATNNNNATC 1 cut(s) 25
BsaHI GRCGYC 2 cut(s) 11, 559
BsaJI CCNNGG 3 cut(s) 6, 78, 337
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 25
BseDI CCNNGG 3 cut(s) 6, 78, 337
BseJI GATNNNNATC 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 380
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 2 cut(s) 91, 103
BseXI GCAGC 1 cut(s) 67
BsgI GTGCAG 2 cut(s) 269, 344
Bsh1236I CGCG 1 cut(s) 157
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 3 cut(s) 5, 234, 538
BshNI GGYRCC 1 cut(s) 558
BsiEI CGRYCG 1 cut(s) 175
BsiHKCI CYCGRG 3 cut(s) 79, 220, 337
BsiSI CCGG 2 cut(s) 230, 338
BslFI GGGAC 3 cut(s) 169, 278, 515
BslI CCNNNNNNNGG 1 cut(s) 380
BsmFI GGGAC 3 cut(s) 169, 278, 515
BsnI GGCC 3 cut(s) 5, 234, 538
BsoBI CYCGRG 3 cut(s) 79, 220, 337
Bsp1286I GDGCHC 2 cut(s) 227, 344
Bsp143I GATC 3 cut(s) 20, 26, 531
BspACI CCGC 7 cut(s) 117, 175, 205, 217, 381, 386, 556
BspANI GGCC 3 cut(s) 5, 234, 538
BspFNI CGCG 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 148, 560
BspT107I GGYRCC 1 cut(s) 558
BsrBI CCGCTC 3 cut(s) 177, 219, 386
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 3 cut(s) 6, 78, 337
BssMI GATC 3 cut(s) 20, 26, 531
BssNI GRCGYC 2 cut(s) 11, 559
BssSI CACGAG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 1 cut(s) 506
BstACI GRCGYC 2 cut(s) 11, 559
BstBAI YACGTR 2 cut(s) 36, 377
BstC8I GCNNGC 1 cut(s) 179
BstDSI CCRYGG 1 cut(s) 6
BstFNI CGCG 1 cut(s) 157
BstH2I RGCGCY 1 cut(s) 562
BstHHI GCGC 3 cut(s) 159, 356, 561
BstKTI GATC 3 cut(s) 23, 29, 534
BstMBI GATC 3 cut(s) 20, 26, 531
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 4 cut(s) 231, 524, 544, 553
BstSCI CCNGG 3 cut(s) 229, 336, 337
BstSFI CTRYAG 1 cut(s) 448
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 314
BsuRI GGCC 3 cut(s) 5, 234, 538
BtgI CCRYGG 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 476
BtrI CACGTC 2 cut(s) 123, 312
Cac8I GCNNGC 1 cut(s) 179
CfoI GCGC 3 cut(s) 159, 356, 561
Cfr13I GGNCC 1 cut(s) 232
Cfr9I CCCGGG 1 cut(s) 337
CseI GACGC 1 cut(s) 340
Csp6I GTAC 1 cut(s) 37
CviQI GTAC 1 cut(s) 37
DinI GGCGCC 1 cut(s) 560
DpnI GATC 3 cut(s) 22, 28, 533
DpnII GATC 3 cut(s) 20, 26, 531
DriI GACNNNNNGTC 1 cut(s) 415
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 506
Eam1105I GACNNNNNGTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 506
EciI GGCGGA 2 cut(s) 106, 396
Eco147I AGGCCT 1 cut(s) 538
Eco24I GRGCYC 2 cut(s) 227, 344
Eco72I CACGTG 1 cut(s) 377
Eco88I CYCGRG 3 cut(s) 79, 220, 337
EcoT38I GRGCYC 2 cut(s) 227, 344
EgeI GGCGCC 1 cut(s) 560
EheI GGCGCC 1 cut(s) 560
FaqI GGGAC 3 cut(s) 169, 278, 515
FbaI TGATCA 1 cut(s) 531
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 3 cut(s) 56, 387, 557
FriOI GRGCYC 2 cut(s) 227, 344
Fsp4HI GCNGC 3 cut(s) 56, 387, 557
GlaI GCGC 3 cut(s) 158, 355, 560
GluI GCNGC 3 cut(s) 56, 387, 557
GsuI CTGGAG 1 cut(s) 88
HaeII RGCGCY 1 cut(s) 562
HaeIII GGCC 3 cut(s) 5, 234, 538
HapII CCGG 2 cut(s) 230, 338
HgaI GACGC 1 cut(s) 340
HhaI GCGC 3 cut(s) 159, 356, 561
Hin1I GRCGYC 2 cut(s) 11, 559
Hin6I GCGC 3 cut(s) 157, 354, 559
HinP1I GCGC 3 cut(s) 157, 354, 559
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 609
HinfI GANTC 2 cut(s) 483, 591
HpaII CCGG 2 cut(s) 230, 338
HphI GGTGA 3 cut(s) 383, 490, 520
Hpy166II GTNNAC 3 cut(s) 96, 126, 169
Hpy188I TCNGA 5 cut(s) 350, 440, 488, 531, 616
Hpy188III TCNNGA 3 cut(s) 18, 24, 211
Hpy8I GTNNAC 3 cut(s) 96, 126, 169
HpyAV CCTTC 3 cut(s) 447, 491, 549
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 8 cut(s) 35, 122, 128, 291, 311, 376, 416, 633
HpyCH4V TGCA 2 cut(s) 250, 361
HpyF10VI GCNNNNNNNGC 4 cut(s) 231, 524, 544, 553
HpySE526I ACGT 8 cut(s) 35, 122, 128, 291, 311, 376, 416, 633
Hsp92I GRCGYC 2 cut(s) 11, 559
HspAI GCGC 3 cut(s) 157, 354, 559
KasI GGCGCC 1 cut(s) 558
Ksp22I TGATCA 1 cut(s) 531
Kzo9I GATC 3 cut(s) 20, 26, 531
LmnI GCTCC 2 cut(s) 152, 383
LpnPI CCDG 9 cut(s) 118, 129, 200, 243, 313, 351, 371, 461, 520
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 341
MaeII ACGT 8 cut(s) 35, 122, 128, 291, 311, 376, 416, 633
MaeIII GTNAC 1 cut(s) 404
MalI GATC 3 cut(s) 22, 28, 533
MbiI CCGCTC 3 cut(s) 177, 219, 386
MboI GATC 3 cut(s) 20, 26, 531
MboII GAAGA 4 cut(s) 124, 319, 523, 534
MhlI GDGCHC 2 cut(s) 227, 344
Mly113I GGCGCC 1 cut(s) 559
MlyI GAGTC 1 cut(s) 585
MmeI TCCRAC 1 cut(s) 639
MnlI CCTC 8 cut(s) 79, 88, 109, 112, 124, 170, 482, 507
MseI TTAA 2 cut(s) 261, 637
MspA1I CMGCKG 1 cut(s) 556
MspI CCGG 2 cut(s) 230, 338
MspR9I CCNGG 3 cut(s) 231, 338, 339
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 4 cut(s) 231, 524, 544, 553
NarI GGCGCC 1 cut(s) 559
NciI CCSGG 3 cut(s) 231, 338, 339
NdeII GATC 3 cut(s) 20, 26, 531
NlaIV GGNNCC 2 cut(s) 148, 560
NmeAIII GCCGAG 1 cut(s) 587
PceI AGGCCT 1 cut(s) 538
PcsI WCGNNNNNNNCGW 4 cut(s) 428, 624, 627, 630
PfeI GAWTC 1 cut(s) 483
PkrI GCNGC 3 cut(s) 57, 388, 558
PleI GAGTC 1 cut(s) 585
PluTI GGCGCC 1 cut(s) 562
PmaCI CACGTG 1 cut(s) 377
PmlI CACGTG 1 cut(s) 377
PpsI GAGTC 1 cut(s) 585
Ppu21I YACGTR 2 cut(s) 36, 377
PspCI CACGTG 1 cut(s) 377
PspN4I GGNNCC 2 cut(s) 148, 560
PspPI GGNCC 1 cut(s) 232
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SalI GTCGAC 1 cut(s) 124
SaqAI TTAA 2 cut(s) 261, 637
SatI GCNGC 3 cut(s) 56, 387, 557
Sau3AI GATC 3 cut(s) 20, 26, 531
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 1 cut(s) 585
ScrFI CCNGG 3 cut(s) 231, 338, 339
SduI GDGCHC 2 cut(s) 227, 344
SfaNI GCATC 1 cut(s) 341
SfcI CTRYAG 1 cut(s) 448
SfoI GGCGCC 1 cut(s) 560
SgrDI CGTCGACG 1 cut(s) 124
SmaI CCCGGG 1 cut(s) 339
SseBI AGGCCT 1 cut(s) 538
SsiI CCGC 7 cut(s) 117, 175, 205, 217, 381, 386, 556
SspDI GGCGCC 1 cut(s) 558
StuI AGGCCT 1 cut(s) 538
StyD4I CCNGG 3 cut(s) 229, 336, 337
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 8 cut(s) 38, 125, 131, 294, 314, 379, 419, 636
TaqI TCGA 5 cut(s) 17, 29, 125, 210, 431
TauI GCSGC 2 cut(s) 389, 559
TfiI GAWTC 1 cut(s) 483
Tru1I TTAA 2 cut(s) 261, 637
Tru9I TTAA 2 cut(s) 261, 637
TseI GCWGC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 479
TspGWI ACGGA 2 cut(s) 154, 586
TspMI CCCGGG 1 cut(s) 337
XmaI CCCGGG 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.