Rh2AG368400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001520
Physical Location & Seq
Forward (+)
54695890 .. 54696918
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG368400.1

Sequence Viewer

Length: 642 bp
ATGGCGGTGATTTCTTCAACGTCGTCGAAAGAAAAAACGGTCTTGGAGCCCTGTTACAGATCTCGGCCTCTCCTACCCCTCTCGGCTCATGGCTTCGCGTCGTCGACCTCATCCAGTTTCTCCGTCACTTCTTCACAATTCTTGACGCGCCACCCCGTGCCCGGCAACTCCATTTCCACCTCATTGTCCTCCTCCGTCCGGTTCGCGGTCGACCTCCCGAGCACTCCCAGCCGTTCGATGACGGTCAAGAAACCGTTCGCGGACAACGGCAAGAACCAAAGCAACGGCCAGAAGAGCGGGACGCCGGTGGCTGGCACCAAGAAAGCGTGCCTCTGTTCCCCTTCGACGCACCCAGGCTCCTTCCGCTGCGCCATGCATAGGAACGCGCCGCGTGGCGGGGCTAGCCAATCGAACTCTAGCAGCCAAACGGCGTCGTCGTACAACTCGAATATCAGGCTCAACTATCGAAGGTCGGCGATGAATAACTCGTTGGTGAGAATCGGAGGAGTGGAAGGGGACTTGGTGAAGCGAGCTTTGGCGGCTCTGATCAGGCCCACGGCTCACAATCAGCGGCGCCGAGCCGATTTCCAACCCAAGCCGAGCCGGCTCTCCGTAATGTCCAAAACGGCGTCGGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

22.62

Weight (kDa)

11.39

Isoelectric Point (pI)

62.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 314, 573
AccBSI CCGCTC 1 cut(s) 297
AccI GTMKAC 2 cut(s) 104, 210
AccII CGCG 6 cut(s) 98, 148, 206, 260, 386, 391
AciI CCGC 9 cut(s) 5, 206, 260, 297, 364, 389, 396, 539, 571
AcoI YGGCCR 1 cut(s) 286
AcyI GRCGYC 4 cut(s) 302, 431, 574, 629
AdeI CACNNNGTG 1 cut(s) 157
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 6 cut(s) 161, 198, 205, 311, 378, 395
AgsI TTSAA 1 cut(s) 18
AjnI CCWGG 1 cut(s) 352
AjuI GAANNNNNNNTTGG 4 cut(s) 473, 505, 518, 550
AluBI AGCT 1 cut(s) 533
AluI AGCT 1 cut(s) 533
Alw21I GWGCWC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 217
AoxI GGCC 3 cut(s) 65, 286, 551
ApeKI GCWGC 2 cut(s) 366, 420
Asp700I GAANNNNTTC 1 cut(s) 254
AspLEI GCGC 4 cut(s) 150, 371, 388, 576
AspS9I GGNCC 1 cut(s) 552
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 3 cut(s) 19, 505, 535
AsuNHI GCTAGC 1 cut(s) 401
AvaI CYCGRG 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 162
BanI GGYRCC 2 cut(s) 314, 573
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 353, 432
BceAI ACGGC 5 cut(s) 216, 283, 301, 444, 573
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 546
BcnI CCSGG 1 cut(s) 162
BfaI CTAG 2 cut(s) 402, 417
BfoI RGCGCY 1 cut(s) 577
BglI GCCNNNNNGGC 1 cut(s) 604
BglII AGATCT 1 cut(s) 59
BisI GCNGC 5 cut(s) 367, 389, 421, 540, 572
BlsI GCNGC 5 cut(s) 368, 390, 422, 541, 573
Bme1390I CCNGG 2 cut(s) 162, 354
BmeT110I CYCGRG 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 552
BmiI GGNNCC 4 cut(s) 48, 316, 358, 575
BmrFI CCNGG 2 cut(s) 162, 354
BmtI GCTAGC 1 cut(s) 405
BpuMI CCSGG 1 cut(s) 162
BsaHI GRCGYC 4 cut(s) 302, 431, 574, 629
BsaJI CCNNGG 2 cut(s) 352, 555
BsaWI WCCGGW 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 6 cut(s) 161, 198, 205, 311, 378, 395
Bse118I RCCGGY 2 cut(s) 304, 603
Bse1I ACTGG 1 cut(s) 114
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 352, 555
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 6 cut(s) 161, 198, 205, 311, 378, 395
BseNI ACTGG 1 cut(s) 114
BseRI GAGGAG 2 cut(s) 181, 519
BseSI GKGCMC 1 cut(s) 162
BseXI GCAGC 2 cut(s) 353, 432
BseYI CCCAGC 1 cut(s) 227
Bsh1236I CGCG 6 cut(s) 98, 148, 206, 260, 386, 391
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 3 cut(s) 67, 288, 553
BshNI GGYRCC 2 cut(s) 314, 573
BsiEI CGRYCG 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 224
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 4 cut(s) 162, 199, 305, 604
BslFI GGGAC 2 cut(s) 313, 530
BslI CCNNNNNNNGG 6 cut(s) 161, 198, 205, 311, 378, 395
BsmFI GGGAC 2 cut(s) 313, 530
BsnI GGCC 3 cut(s) 67, 288, 553
BsoBI CYCGRG 1 cut(s) 217
Bsp1286I GDGCHC 3 cut(s) 51, 162, 224
Bsp143I GATC 2 cut(s) 59, 546
BspACI CCGC 9 cut(s) 5, 206, 260, 297, 364, 389, 396, 539, 571
BspANI GGCC 3 cut(s) 67, 288, 553
BspFNI CGCG 6 cut(s) 98, 148, 206, 260, 386, 391
BspLI GGNNCC 4 cut(s) 48, 316, 358, 575
BspOI GCTAGC 1 cut(s) 405
BspQI GCTCTTC 1 cut(s) 287
BspT107I GGYRCC 2 cut(s) 314, 573
BsrBI CCGCTC 1 cut(s) 297
BsrFI RCCGGY 2 cut(s) 304, 603
BsrI ACTGG 1 cut(s) 114
BssAI RCCGGY 2 cut(s) 304, 603
BssECI CCNNGG 2 cut(s) 352, 555
BssMI GATC 2 cut(s) 59, 546
BssNI GRCGYC 4 cut(s) 302, 431, 574, 629
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 3 cut(s) 40, 244, 255
Bst6I CTCTTC 1 cut(s) 287
BstACI GRCGYC 4 cut(s) 302, 431, 574, 629
BstC8I GCNNGC 5 cut(s) 313, 328, 403, 531, 605
BstDSI CCRYGG 1 cut(s) 555
BstF5I GGATG 1 cut(s) 110
BstFNI CGCG 6 cut(s) 98, 148, 206, 260, 386, 391
BstH2I RGCGCY 1 cut(s) 577
BstHHI GCGC 4 cut(s) 150, 371, 388, 576
BstKTI GATC 2 cut(s) 62, 549
BstMBI GATC 2 cut(s) 59, 546
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 6 cut(s) 228, 294, 363, 402, 539, 604
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 2 cut(s) 160, 352
BstSLI GKGCMC 1 cut(s) 162
BstUI CGCG 6 cut(s) 98, 148, 206, 260, 386, 391
BstV1I GCAGC 2 cut(s) 353, 432
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
BsuRI GGCC 3 cut(s) 67, 288, 553
BtgI CCRYGG 1 cut(s) 555
BtgZI GCGATG 1 cut(s) 491
BtsCI GGATG 1 cut(s) 110
Cac8I GCNNGC 5 cut(s) 313, 328, 403, 531, 605
CfoI GCGC 4 cut(s) 150, 371, 388, 576
Cfr10I RCCGGY 2 cut(s) 304, 603
Cfr13I GGNCC 1 cut(s) 552
CseI GACGC 6 cut(s) 87, 154, 310, 355, 420, 618
Csp6I GTAC 1 cut(s) 439
CviAII CATG 2 cut(s) 89, 373
CviQI GTAC 1 cut(s) 439
DinI GGCGCC 1 cut(s) 575
DpnI GATC 2 cut(s) 61, 548
DpnII GATC 2 cut(s) 59, 546
DraIII CACNNNGTG 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 51
EgeI GGCGCC 1 cut(s) 575
EheI GGCGCC 1 cut(s) 575
FaeI CATG 2 cut(s) 92, 376
FaiI YATR 3 cut(s) 90, 374, 378
FaqI GGGAC 2 cut(s) 313, 530
FatI CATG 2 cut(s) 88, 372
FauI CCCGC 2 cut(s) 290, 389
FbaI TGATCA 1 cut(s) 546
FblI GTMKAC 2 cut(s) 104, 210
Fnu4HI GCNGC 5 cut(s) 367, 389, 421, 540, 572
FokI GGATG 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 5 cut(s) 367, 389, 421, 540, 572
FspBI CTAG 2 cut(s) 402, 417
GlaI GCGC 4 cut(s) 149, 370, 387, 575
GluI GCNGC 5 cut(s) 367, 389, 421, 540, 572
GsaI CCCAGC 1 cut(s) 231
HaeII RGCGCY 1 cut(s) 577
HaeIII GGCC 3 cut(s) 67, 288, 553
HapII CCGG 4 cut(s) 162, 199, 305, 604
HgaI GACGC 6 cut(s) 87, 154, 310, 355, 420, 618
HhaI GCGC 4 cut(s) 150, 371, 388, 576
Hin1I GRCGYC 4 cut(s) 302, 431, 574, 629
Hin1II CATG 2 cut(s) 92, 376
Hin6I GCGC 4 cut(s) 148, 369, 386, 574
HinP1I GCGC 4 cut(s) 148, 369, 386, 574
HincII GTYRAC 2 cut(s) 105, 211
HindII GTYRAC 2 cut(s) 105, 211
HinfI GANTC 1 cut(s) 498
HpaII CCGG 4 cut(s) 162, 199, 305, 604
HphI GGTGA 3 cut(s) 19, 505, 535
Hpy166II GTNNAC 2 cut(s) 105, 211
Hpy188I TCNGA 2 cut(s) 503, 546
Hpy188III TCNNGA 4 cut(s) 142, 217, 247, 639
Hpy8I GTNNAC 2 cut(s) 105, 211
Hpy99I CGWCG 8 cut(s) 25, 28, 103, 106, 349, 436, 439, 634
HpyAV CCTTC 4 cut(s) 351, 370, 462, 506
HpyCH4III ACNGT 3 cut(s) 40, 244, 255
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 1 cut(s) 376
HpyF10VI GCNNNNNNNGC 6 cut(s) 228, 294, 363, 402, 539, 604
HpySE526I ACGT 1 cut(s) 20
Hsp92I GRCGYC 4 cut(s) 302, 431, 574, 629
Hsp92II CATG 2 cut(s) 92, 376
HspAI GCGC 4 cut(s) 148, 369, 386, 574
KasI GGCGCC 1 cut(s) 573
KroI GCCGGC 1 cut(s) 603
KroNI GCCGGC 1 cut(s) 605
Ksp22I TGATCA 1 cut(s) 546
Kzo9I GATC 2 cut(s) 59, 546
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 2 cut(s) 46, 362
Lsp1109I GCAGC 2 cut(s) 353, 432
MaeI CTAG 2 cut(s) 402, 417
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 2 cut(s) 53, 124
MalI GATC 2 cut(s) 61, 548
MbiI CCGCTC 1 cut(s) 297
MboI GATC 2 cut(s) 59, 546
MboII GAAGA 3 cut(s) 6, 123, 304
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 3 cut(s) 51, 162, 224
MluCI AATT 1 cut(s) 137
Mly113I GGCGCC 1 cut(s) 574
MmeI TCCRAC 1 cut(s) 613
MnlI CCTC 9 cut(s) 78, 89, 118, 190, 199, 202, 224, 341, 497
Mph1103I ATGCAT 1 cut(s) 378
MroNI GCCGGC 1 cut(s) 603
MroXI GAANNNNTTC 1 cut(s) 254
MspA1I CMGCKG 2 cut(s) 366, 571
MspI CCGG 4 cut(s) 162, 199, 305, 604
MspR9I CCNGG 2 cut(s) 162, 354
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 6 cut(s) 98, 148, 206, 260, 386, 391
MwoI GCNNNNNNNGC 6 cut(s) 228, 294, 363, 402, 539, 604
NaeI GCCGGC 1 cut(s) 605
NarI GGCGCC 1 cut(s) 574
NciI CCSGG 1 cut(s) 162
NdeII GATC 2 cut(s) 59, 546
NgoMIV GCCGGC 1 cut(s) 603
NheI GCTAGC 1 cut(s) 401
NlaIII CATG 2 cut(s) 92, 376
NlaIV GGNNCC 4 cut(s) 48, 316, 358, 575
NmeAIII GCCGAG 4 cut(s) 43, 62, 602, 624
NmuCI GTSAC 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 378
PciSI GCTCTTC 1 cut(s) 287
PcsI WCGNNNNNNNCGW 2 cut(s) 434, 443
PdiI GCCGGC 1 cut(s) 605
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 498
PkrI GCNGC 5 cut(s) 368, 390, 422, 541, 573
PluTI GGCGCC 1 cut(s) 577
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 4 cut(s) 48, 316, 358, 575
PspPI GGNCC 1 cut(s) 552
PsuI RGATCY 1 cut(s) 59
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SalI GTCGAC 2 cut(s) 103, 209
SapI GCTCTTC 1 cut(s) 287
SatI GCNGC 5 cut(s) 367, 389, 421, 540, 572
Sau3AI GATC 2 cut(s) 59, 546
Sau96I GGNCC 1 cut(s) 552
ScrFI CCNGG 2 cut(s) 162, 354
SduI GDGCHC 3 cut(s) 51, 162, 224
SetI ASST 6 cut(s) 23, 110, 182, 216, 473, 535
SfoI GGCGCC 1 cut(s) 575
SgrAI CRCCGGYG 1 cut(s) 304
Sse9I AATT 1 cut(s) 137
SsiI CCGC 9 cut(s) 5, 206, 260, 297, 364, 389, 396, 539, 571
SspDI GGCGCC 1 cut(s) 573
SspMI CTAG 2 cut(s) 402, 417
StyD4I CCNGG 2 cut(s) 160, 352
TaaI ACNGT 3 cut(s) 40, 244, 255
TaiI ACGT 1 cut(s) 23
TaqI TCGA 8 cut(s) 26, 104, 210, 236, 344, 410, 446, 466
TasI AATT 1 cut(s) 137
TauI GCSGC 3 cut(s) 391, 542, 574
TfiI GAWTC 1 cut(s) 498
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 2 cut(s) 366, 420
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 494
TspGWI ACGGA 3 cut(s) 112, 184, 601
XmiI GTMKAC 2 cut(s) 104, 210
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 2 cut(s) 402, 417
Zsp2I ATGCAT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.