Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001520

Physical Location & Seq

Genomic Coordinates Forward (+)

24315145 .. 24315771

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1239000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCGACCGCATCTTCCTCATCGAGGGCAAGAACCCGGGCAAACAAAAGCGGCCCTGTGCTCCGGTCGCTCTCGCCTTCCGAAAAGTTCTACACCGCTTCCAATGGCAGTATCTCATCGTCGGCGTCAGGTTTCGTTTATTTAACGAGCTTAAGCTTCTCGTCGCCGACGTCAGCTTTATTCCACCACCACTACCACCACCACCAGGACCACCACTACTACAATCAGCAGATCAATCACCACTACCATCATAGATCCGCTTCTCCGACGCGTGTCAACCTTTACACCTCTTCATCTCCGTTTCCGTACGTTCGGTTCTCTATCAACCACCGTTTGATCTCTCCCAACCACCATTGGAATCGATCCATCGCCGTCTCCAAGAAAACTGGACCGATTTCGATGCCGAAGAAGACCTGTATGTGCTCGCTGATGTCGTATTCGGGATCATTTTGCTGCAACCTCCATAAAAACCAGAGATGGAGTGAAAACACCGGATCTTTCCTGTCGAACAGGTTGAATATGAGCAGGTCTACTATGACGAACTCGCTGGTACGAATTAGTGGAGTCGAAGGCGAATGGGTGAAGCGAACCTTGACCTCTCTAATTCGCCCTTGTGCGCACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.5

Weight (kDa)

10.36

Isoelectric Point (pI)

65.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11090 AT5G25280 AT5G25280 AT5G25280
fragaria_vesca	FvH4_1g01930 FvH4_6g29080 FvH4_6g29090
malus_domestica	MD00G1046800.v1.1 MD08G1152900.v1.1 MD13G1239000.v1.1 MD15G1129600.v1.1 MD15G1161800.v1.1 MD17G1218000.v1.1
prunus_persica	Prupe.1G485100_v2.0.a1 Prupe.1G485100_v2.0.a1 Prupe.3G093600_v2.0.a1 Prupe.7G256900_v2.0.a1 Prupe.7G256900_v2.0.a1
pyrus_communis	pycom02g01570 pycom08g13180 pycom15g11680 pycom15g14540 pycom17g22230
rosa_chinensis	RchiOBHm_Chr2g0086961 RchiOBHm_Chr2g0134271 RchiOBHm_Chr6g0297351
rosa_laevigata	RLG00000011609 RLG00000015818 RLG00000019383
rosa_multiflora	Rmu_co8148184.1_g000001 Rmu_co8308813.1_g000001 Rmu_sc0000418.1_g000003 Rmu_sc0004535.1_g000011 Rmu_sc0009060.1_g000002 Rmu_sc0030045.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110390 Rroxscaffold_7G00170620
rosa_rugosa	Rorug01G0065600 Rorug01G0471100 Rorug02G0315800 Rorug06G0270800
rosa_samantha	Rh2AG023700 Rh2AG368400 Rh2BG374400 Rh2CG352100 Rh2DG024400 Rh2DG391700 Rh6DG382300
rosa_wichuraiana	Rw2G001870 Rw2G030020 Rw6G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	173
Acc16I	TGCGCA	1 cut(s)	618
Acc36I	ACCTGC	1 cut(s)	516
AccI	GTMKAC	1 cut(s)	530
AccII	CGCG	1 cut(s)	271
AciI	CCGC	4 cut(s)	9, 51, 96, 258
AclWI	GGATC	4 cut(s)	249, 357, 451, 502
AcyI	GRCGYC	2 cut(s)	125, 170
AfaI	GTAC	2 cut(s)	308, 552
AfiI	CCNNNNNNNGG	2 cut(s)	24, 205
AflII	CTTAAG	1 cut(s)	151
AflIII	ACRYGT	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	517
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	3 cut(s)	150, 156, 176
AluI	AGCT	3 cut(s)	150, 156, 176
Alw21I	GWGCWC	2 cut(s)	63, 425
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	4 cut(s)	249, 357, 451, 502
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	619
AspS9I	GGNCC	3 cut(s)	53, 208, 389
AsuC2I	CCSGG	2 cut(s)	37, 38
AsuHPI	GGTGA	2 cut(s)	230, 592
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	2 cut(s)	208, 389
BbsI	GAAGAC	1 cut(s)	416
Bbv12I	GWGCWC	2 cut(s)	63, 425
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	3 cut(s)	255, 374, 471
BceAI	ACGGC	1 cut(s)	356
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	2 cut(s)	37, 38
BcoDI	GTCTC	1 cut(s)	379
BfrI	CTTAAG	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	516
BisI	GCNGC	2 cut(s)	52, 454
BlsI	GCNGC	2 cut(s)	53, 455
Bme1390I	CCNGG	3 cut(s)	37, 38, 206
Bme18I	GGWCC	2 cut(s)	208, 389
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	3 cut(s)	53, 208, 389
BmrFI	CCNGG	3 cut(s)	37, 38, 206
BmsI	GCATC	2 cut(s)	20, 390
BoxI	GACNNNNGTC	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	416
BpuMI	CCSGG	2 cut(s)	37, 38
Bsa29I	ATCGAT	1 cut(s)	361
BsaHI	GRCGYC	2 cut(s)	125, 170
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	2 cut(s)	63, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 205
Bse1I	ACTGG	2 cut(s)	391, 622
BseBI	CCWGG	1 cut(s)	206
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	24, 205
BseNI	ACTGG	2 cut(s)	391, 622
BseXI	GCAGC	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	271
Bsh1285I	CGRYCG	2 cut(s)	9, 68
BshFI	GGCC	1 cut(s)	54
BshVI	ATCGAT	1 cut(s)	361
BsiEI	CGRYCG	2 cut(s)	9, 68
BsiHKAI	GWGCWC	2 cut(s)	63, 425
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	3 cut(s)	37, 64, 492
BsiWI	CGTACG	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	24, 205
BsmAI	GTCTC	1 cut(s)	379
BsmBI	CGTCTC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	54
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	2 cut(s)	63, 425
Bsp143I	GATC	6 cut(s)	231, 254, 336, 362, 443, 494
BspACI	CCGC	4 cut(s)	9, 51, 96, 258
BspANI	GGCC	1 cut(s)	54
BspDI	ATCGAT	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	516
BspPI	GGATC	4 cut(s)	249, 357, 451, 502
BspTI	CTTAAG	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	391, 622
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	6 cut(s)	231, 254, 336, 362, 443, 494
BssNI	GRCGYC	2 cut(s)	125, 170
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	295
BstACI	GRCGYC	2 cut(s)	125, 170
BstAFI	CTTAAG	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	425
BstENI	CCTNNNNNAGG	1 cut(s)	22
BstFNI	CGCG	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	619
BstKTI	GATC	6 cut(s)	234, 257, 339, 365, 446, 497
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	6 cut(s)	231, 254, 336, 362, 443, 494
BstMCI	CGRYCG	2 cut(s)	9, 68
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	206
BstPAI	GACNNNNGTC	1 cut(s)	272
BstSCI	CCNGG	3 cut(s)	35, 36, 204
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	440
BstV2I	GAAGAC	1 cut(s)	416
BstX2I	RGATCY	2 cut(s)	254, 494
BstYI	RGATCY	2 cut(s)	254, 494
Bsu15I	ATCGAT	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	54
BsuTUI	ATCGAT	1 cut(s)	361
BtgZI	GCGATG	1 cut(s)	352
BveI	ACCTGC	1 cut(s)	516
Cac8I	GCNNGC	1 cut(s)	425
CfoI	GCGC	1 cut(s)	619
Cfr13I	GGNCC	3 cut(s)	53, 208, 389
Cfr9I	CCCGGG	1 cut(s)	36
ClaI	ATCGAT	1 cut(s)	361
CseI	GACGC	2 cut(s)	114, 277
Csp6I	GTAC	2 cut(s)	307, 551
CviJI	RGCY	4 cut(s)	54, 150, 156, 176
CviKI_1	RGCY	4 cut(s)	54, 150, 156, 176
CviQI	GTAC	2 cut(s)	307, 551
DpnI	GATC	6 cut(s)	233, 256, 338, 364, 445, 496
DpnII	GATC	6 cut(s)	231, 254, 336, 362, 443, 494
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Eco47I	GGWCC	2 cut(s)	208, 389
Eco88I	CYCGRG	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	379
FaiI	YATR	5 cut(s)	252, 419, 465, 521, 536
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FblI	GTMKAC	1 cut(s)	530
Fnu4HI	GCNGC	2 cut(s)	52, 454
Fsp4HI	GCNGC	2 cut(s)	52, 454
FspAI	RTGCGCAY	1 cut(s)	618
FspI	TGCGCA	1 cut(s)	618
GlaI	GCGC	1 cut(s)	618
GluI	GCNGC	2 cut(s)	52, 454
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	3 cut(s)	37, 64, 492
HgaI	GACGC	2 cut(s)	114, 277
HhaI	GCGC	1 cut(s)	619
Hin1I	GRCGYC	2 cut(s)	125, 170
Hin6I	GCGC	1 cut(s)	617
HinP1I	GCGC	1 cut(s)	617
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	2 cut(s)	358, 564
HpaII	CCGG	3 cut(s)	37, 64, 492
HphI	GGTGA	2 cut(s)	230, 592
Hpy166II	GTNNAC	2 cut(s)	277, 531
Hpy188I	TCNGA	2 cut(s)	82, 267
Hpy188III	TCNNGA	1 cut(s)	441
Hpy8I	GTNNAC	2 cut(s)	277, 531
Hpy99I	CGWCG	4 cut(s)	124, 166, 172, 271
HpyAV	CCTTC	2 cut(s)	87, 563
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	2 cut(s)	170, 309
HpyCH4V	TGCA	1 cut(s)	456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpySE526I	ACGT	2 cut(s)	170, 309
Hsp92I	GRCGYC	2 cut(s)	125, 170
HspAI	GCGC	1 cut(s)	617
Kzo9I	GATC	6 cut(s)	231, 254, 336, 362, 443, 494
LmnI	GCTCC	1 cut(s)	66
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	2 cut(s)	20, 390
MaeII	ACGT	2 cut(s)	170, 309
MalI	GATC	6 cut(s)	233, 256, 338, 364, 445, 496
MboI	GATC	6 cut(s)	231, 254, 336, 362, 443, 494
MboII	GAAGA	4 cut(s)	6, 282, 418, 421
MflI	RGATCY	2 cut(s)	254, 494
MhlI	GDGCHC	2 cut(s)	63, 425
MluCI	AATT	2 cut(s)	555, 603
MluI	ACGCGT	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	573
MmeI	TCCRAC	1 cut(s)	290
MnlI	CCTC	5 cut(s)	18, 28, 298, 470, 607
MseI	TTAA	2 cut(s)	143, 152
MspCI	CTTAAG	1 cut(s)	151
MspI	CCGG	3 cut(s)	37, 64, 492
MspR9I	CCNGG	3 cut(s)	37, 38, 206
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	1 cut(s)	67
NciI	CCSGG	2 cut(s)	37, 38
NdeII	GATC	6 cut(s)	231, 254, 336, 362, 443, 494
NsbI	TGCGCA	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	2 cut(s)	167, 431
PfeI	GAWTC	1 cut(s)	358
Pfl23II	CGTACG	1 cut(s)	306
PkrI	GCNGC	2 cut(s)	53, 455
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
PshAI	GACNNNNGTC	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspLI	CGTACG	1 cut(s)	306
PspPI	GGNCC	3 cut(s)	53, 208, 389
PsrI	GAACNNNNNNTAC	2 cut(s)	299, 331
PsuI	RGATCY	2 cut(s)	254, 494
RsaI	GTAC	2 cut(s)	308, 552
RsaNI	GTAC	2 cut(s)	307, 551
SaqAI	TTAA	2 cut(s)	143, 152
SatI	GCNGC	2 cut(s)	52, 454
Sau3AI	GATC	6 cut(s)	231, 254, 336, 362, 443, 494
Sau96I	GGNCC	3 cut(s)	53, 208, 389
SchI	GAGTC	1 cut(s)	573
ScrFI	CCNGG	3 cut(s)	37, 38, 206
SduI	GDGCHC	2 cut(s)	63, 425
SfaNI	GCATC	2 cut(s)	20, 390
SinI	GGWCC	2 cut(s)	208, 389
SmaI	CCCGGG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
Sse9I	AATT	2 cut(s)	555, 603
SsiI	CCGC	4 cut(s)	9, 51, 96, 258
StyD4I	CCNGG	3 cut(s)	35, 36, 204
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	2 cut(s)	173, 312
TaqI	TCGA	5 cut(s)	23, 361, 398, 506, 567
TaqII	GACCGA	1 cut(s)	406
TasI	AATT	2 cut(s)	555, 603
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	2 cut(s)	143, 152
Tru9I	TTAA	2 cut(s)	143, 152
TseI	GCWGC	1 cut(s)	453
TspDTI	ATGAA	1 cut(s)	282
TspGWI	ACGGA	2 cut(s)	288, 294
TspMI	CCCGGG	1 cut(s)	36
Vha464I	CTTAAG	1 cut(s)	151
VpaK11BI	GGWCC	2 cut(s)	208, 389
XagI	CCTNNNNNAGG	1 cut(s)	22
XmaI	CCCGGG	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	530
ZraI	GACGTC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.