Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8148184.1

Orthogroup ID

OG0001520

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 467

Gene Structure 467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8148184.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 467 bp

accaccacaccgactaccaccaccaccgttcggcttcaccgacacgtgtcaatctctacacctccagtgctctgtcaccagctgtccgcttctccatcgagcaccgctccatctccccaaaccgatccatcaccgcttccaaaaagaacggccccatcgcggcggccaggaagacgtgtatgtgctcgccgacgaatcatccaggctcgtttcgctgcagtcttcacaagaatcaagggagtgcgaatcatcacaaccacaaccagacgccgtatcccaacaacaggctgaacatgcgcagatctgccatgacgaactcgctggttcgaatcagcggcgtcgagggcgagtgggtgaagagagccttgacggctctgattcgtccttcttcgcaccagcagaggcggagagccgggttccagccacggcagagcaggctctccgtcatgtccaaggccggttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.24

Weight (kDa)

11.72

Isoelectric Point (pI)

65.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11090 AT5G25280 AT5G25280 AT5G25280
fragaria_vesca	FvH4_1g01930 FvH4_6g29080 FvH4_6g29090
malus_domestica	MD00G1046800.v1.1 MD08G1152900.v1.1 MD13G1239000.v1.1 MD15G1129600.v1.1 MD15G1161800.v1.1 MD17G1218000.v1.1
prunus_persica	Prupe.1G485100_v2.0.a1 Prupe.1G485100_v2.0.a1 Prupe.3G093600_v2.0.a1 Prupe.7G256900_v2.0.a1 Prupe.7G256900_v2.0.a1
pyrus_communis	pycom02g01570 pycom08g13180 pycom15g11680 pycom15g14540 pycom17g22230
rosa_chinensis	RchiOBHm_Chr2g0086961 RchiOBHm_Chr2g0134271 RchiOBHm_Chr6g0297351
rosa_laevigata	RLG00000011609 RLG00000015818 RLG00000019383
rosa_multiflora	Rmu_co8148184.1_g000001 Rmu_co8308813.1_g000001 Rmu_sc0000418.1_g000003 Rmu_sc0004535.1_g000011 Rmu_sc0009060.1_g000002 Rmu_sc0030045.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110390 Rroxscaffold_7G00170620
rosa_rugosa	Rorug01G0065600 Rorug01G0471100 Rorug02G0315800 Rorug06G0270800
rosa_samantha	Rh2AG023700 Rh2AG368400 Rh2BG374400 Rh2CG352100 Rh2DG024400 Rh2DG391700 Rh6DG382300
rosa_wichuraiana	Rw2G001870 Rw2G030020 Rw6G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	298
AccBSI	CCGCTC	1 cut(s)	107
AccII	CGCG	1 cut(s)	160
AciI	CCGC	7 cut(s)	87, 105, 134, 160, 163, 335, 405
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	164
AcvI	CACGTG	1 cut(s)	46
AcyI	GRCGYC	2 cut(s)	268, 338
AfiI	CCNNNNNNNGG	3 cut(s)	30, 159, 284
AflIII	ACRYGT	3 cut(s)	43, 45, 175
AjiI	CACGTC	1 cut(s)	176
AjnI	CCWGG	2 cut(s)	166, 201
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
Alw21I	GWGCWC	3 cut(s)	72, 104, 187
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	3 cut(s)	150, 164, 455
ApeKI	GCWGC	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	151
AsuC2I	CCSGG	1 cut(s)	414
AsuHPI	GGTGA	4 cut(s)	29, 68, 123, 366
AsuII	TTCGAA	1 cut(s)	327
BbrPI	CACGTG	1 cut(s)	46
BbsI	GAAGAC	2 cut(s)	178, 214
Bbv12I	GWGCWC	3 cut(s)	72, 104, 187
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	4 cut(s)	103, 118, 136, 163
BceAI	ACGGC	4 cut(s)	165, 255, 386, 442
BciT130I	CCWGG	2 cut(s)	168, 203
BciVI	GTATCC	1 cut(s)	284
BcnI	CCSGG	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	284
BglI	GCCNNNNNGGC	1 cut(s)	370
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	4 cut(s)	161, 164, 216, 336
BlsI	GCNGC	4 cut(s)	162, 165, 217, 337
Bme1390I	CCNGG	3 cut(s)	168, 203, 414
BmgBI	CACGTC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	2 cut(s)	153, 418
BmrFI	CCNGG	3 cut(s)	168, 203, 414
BoxI	GACNNNNGTC	1 cut(s)	46
BpiI	GAAGAC	2 cut(s)	178, 214
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
BpmI	CTGGAG	1 cut(s)	48
Bpu14I	TTCGAA	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	414
BsaAI	YACGTR	1 cut(s)	46
BsaHI	GRCGYC	2 cut(s)	268, 338
BsaJI	CCNNGG	2 cut(s)	424, 452
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 159, 284
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	168, 203
BseDI	CCNNGG	2 cut(s)	424, 452
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	3 cut(s)	30, 159, 284
BseNI	ACTGG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	160
BshFI	GGCC	3 cut(s)	152, 166, 457
BsiHKAI	GWGCWC	3 cut(s)	72, 104, 187
BsiSI	CCGG	2 cut(s)	413, 458
BslI	CCNNNNNNNGG	3 cut(s)	30, 159, 284
BsnI	GGCC	3 cut(s)	152, 166, 457
Bsp119I	TTCGAA	1 cut(s)	327
Bsp1286I	GDGCHC	3 cut(s)	72, 104, 187
Bsp143I	GATC	2 cut(s)	124, 301
BspACI	CCGC	7 cut(s)	87, 105, 134, 160, 163, 335, 405
BspANI	GGCC	3 cut(s)	152, 166, 457
BspFNI	CGCG	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	153, 418
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	1 cut(s)	119
BspT104I	TTCGAA	1 cut(s)	327
BsrBI	CCGCTC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	2 cut(s)	424, 452
BssMI	GATC	2 cut(s)	124, 301
BssNI	GRCGYC	2 cut(s)	268, 338
BssT1I	CCWWGG	1 cut(s)	452
Bst2UI	CCWGG	2 cut(s)	168, 203
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	352
BstACI	GRCGYC	2 cut(s)	268, 338
BstBAI	YACGTR	1 cut(s)	46
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	187, 436
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	198
BstFNI	CGCG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	2 cut(s)	127, 304
BstMBI	GATC	2 cut(s)	124, 301
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 294, 344, 370, 435
BstNI	CCWGG	2 cut(s)	168, 203
BstNSI	RCATGY	1 cut(s)	297
BstPAI	GACNNNNGTC	1 cut(s)	46
BstSCI	CCNGG	3 cut(s)	166, 201, 412
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	2 cut(s)	178, 214
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	284
BsuRI	GGCC	3 cut(s)	152, 166, 457
BtgI	CCRYGG	1 cut(s)	424
BtgZI	GCGATG	1 cut(s)	141
BtrI	CACGTC	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	187, 436
CfoI	GCGC	1 cut(s)	299
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	1 cut(s)	151
CseI	GACGC	2 cut(s)	276, 327
CviAII	CATG	3 cut(s)	294, 309, 447
DpnI	GATC	2 cut(s)	126, 303
DpnII	GATC	2 cut(s)	124, 301
EaeI	YGGCCR	1 cut(s)	164
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
EciI	GGCGGA	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	452
Eco72I	CACGTG	1 cut(s)	46
EcoRII	CCWGG	2 cut(s)	166, 201
EcoT14I	CCWWGG	1 cut(s)	452
ErhI	CCWWGG	1 cut(s)	452
FaeI	CATG	3 cut(s)	297, 312, 450
FaiI	YATR	4 cut(s)	181, 295, 310, 448
FalI	AAGNNNNNCTT	2 cut(s)	349, 381
FatI	CATG	3 cut(s)	293, 308, 446
Fnu4HI	GCNGC	4 cut(s)	161, 164, 216, 336
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	4 cut(s)	161, 164, 216, 336
FspI	TGCGCA	1 cut(s)	298
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	4 cut(s)	161, 164, 216, 336
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	3 cut(s)	152, 166, 457
HapII	CCGG	2 cut(s)	413, 458
HgaI	GACGC	2 cut(s)	276, 327
HhaI	GCGC	1 cut(s)	299
Hin1I	GRCGYC	2 cut(s)	268, 338
Hin1II	CATG	3 cut(s)	297, 312, 450
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HinfI	GANTC	5 cut(s)	195, 231, 246, 329, 378
HpaII	CCGG	2 cut(s)	413, 458
HphI	GGTGA	4 cut(s)	29, 68, 123, 366
Hpy188I	TCNGA	1 cut(s)	377
Hpy99I	CGWCG	2 cut(s)	195, 343
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	2 cut(s)	45, 175
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 294, 344, 370, 435
HpySE526I	ACGT	2 cut(s)	45, 175
Hsp92I	GRCGYC	2 cut(s)	268, 338
Hsp92II	CATG	3 cut(s)	297, 312, 450
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	124, 301
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	1 cut(s)	202
MaeII	ACGT	2 cut(s)	45, 175
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	2 cut(s)	126, 303
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	2 cut(s)	124, 301
MboII	GAAGA	4 cut(s)	183, 214, 369, 380
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	3 cut(s)	72, 104, 187
MnlI	CCTC	3 cut(s)	72, 336, 395
MspA1I	CMGCKG	2 cut(s)	82, 335
MspI	CCGG	2 cut(s)	413, 458
MspR9I	CCNGG	3 cut(s)	168, 203, 414
MvaI	CCWGG	2 cut(s)	168, 203
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	5 cut(s)	212, 294, 344, 370, 435
NciI	CCSGG	1 cut(s)	414
NdeII	GATC	2 cut(s)	124, 301
NlaIII	CATG	3 cut(s)	297, 312, 450
NlaIV	GGNNCC	2 cut(s)	153, 418
NmuCI	GTSAC	1 cut(s)	74
NsbI	TGCGCA	1 cut(s)	298
NspI	RCATGY	1 cut(s)	297
NspV	TTCGAA	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	37
PfeI	GAWTC	5 cut(s)	195, 231, 246, 329, 378
PkrI	GCNGC	4 cut(s)	162, 165, 217, 337
PmaCI	CACGTG	1 cut(s)	46
PmlI	CACGTG	1 cut(s)	46
Ppu21I	YACGTR	1 cut(s)	46
PshAI	GACNNNNGTC	1 cut(s)	46
Psp6I	CCWGG	2 cut(s)	166, 201
PspCI	CACGTG	1 cut(s)	46
PspGI	CCWGG	2 cut(s)	166, 201
PspN4I	GGNNCC	2 cut(s)	153, 418
PspPI	GGNCC	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	82
SatI	GCNGC	4 cut(s)	161, 164, 216, 336
Sau3AI	GATC	2 cut(s)	124, 301
Sau96I	GGNCC	1 cut(s)	151
ScrFI	CCNGG	3 cut(s)	168, 203, 414
SduI	GDGCHC	3 cut(s)	72, 104, 187
SetI	ASST	4 cut(s)	48, 64, 84, 178
SfcI	CTRYAG	1 cut(s)	216
SfuI	TTCGAA	1 cut(s)	327
SsiI	CCGC	7 cut(s)	87, 105, 134, 160, 163, 335, 405
StyD4I	CCNGG	3 cut(s)	166, 201, 412
StyI	CCWWGG	1 cut(s)	452
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	2 cut(s)	48, 178
TaqI	TCGA	3 cut(s)	98, 327, 341
TauI	GCSGC	3 cut(s)	163, 166, 338
TfiI	GAWTC	5 cut(s)	195, 231, 246, 329, 378
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	432
TspRI	CASTG	1 cut(s)	72
XceI	RCATGY	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.