Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001282

Physical Location & Seq

Genomic Coordinates Forward (+)

6826365 .. 6827748

Gene Structure 1384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCCGGAGTTTTCAAAACGGTTACGTTTCTTGTTTTGGTTTTCGCTGCCGTTGTTGTCTTCGCGGAGGACTACGATGTTGGTGATGATACGGAATGGACGAGACCTATGGACCCCGAGTTCTATACTACTTGGGCTACCGGTAAAACTTTCCGTGTAGGCGACGAGCTCGAATTTGATTTCGCTGCTGGGAGGCATGATGTGGCAGTTGTATCAGAAGCTGCATTTGAAAACTGTGAGAAAGAGAAACCCATTAGCCACATGACCGTTCCTCCGGTCAAAATTATGCTAAACACCACTGGACCACAATACTTTATCTGCACCGTCGGTGACCATTGTCGTTTTGGTCAAAAACTTTCCATCACTGTAGTTGCTGCTGGTGCAACTGGAGGTGCTACTCCTGGTGCCGGTGCTACCCCAGCACCTGGATCAACCCCAAGTACTGGAGGAACCACTCCTCCCACTGCGGGTGGGACCACAACACCTTCAGGCTCTAGCGGAACCACTACTCCAGCTGGAAATGCCGCTTCCTCATTAGGTGGTGCTACTTTTCTGGTCGCTTTTGTTTCTGCTGTTGTTGCTCTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

196

Amino Acids

20.05

Weight (kDa)

4.68

Isoelectric Point (pI)

21.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	33 - 117	2.8e-29	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20230
fragaria_vesca	FvH4_6g29770 FvH4_6g29800 FvH4_6g29800
malus_domestica	MD17G1210900.v1.1 MD17G1211000.v1.1 MD17G1211100.v1.1 MD17G1211200.v1.1 MD17G1211300.v1.1
prunus_persica	Prupe.3G086400_v2.0.a1 Prupe.3G086500_v2.0.a1 Prupe.3G112300_v2.0.a1 Prupe.7G246300_v2.0.a1
pyrus_communis	pycom17g21600 pycom17g21610
rosa_chinensis	RchiOBHm_Chr2g0135581 RchiOBHm_Chr2g0135591 RchiOBHm_Chr2g0135601
rosa_laevigata	RLG00000019415 RLG00000019417 RLG00000019468 RLG00000019470 RLG00000019471 RLG00000019472
rosa_multiflora	Rmu_sc0002398.1_g000005 Rmu_sc0002398.1_g000011 Rmu_sc0002792.1_g000051 Rmu_sc0006464.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109040 Rroxscaffold_2G00109060 Rroxscaffold_2G00109140 Rroxscaffold_2G00109150 Rroxscaffold_2G00109160 Rroxscaffold_4G00301440
rosa_rugosa	Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325600 Rorug02G0325800
rosa_samantha	Rh1BG222100 Rh1BG222500 Rh1DG248800 Rh1DG249300 Rh2AG376500 Rh2BG382500 Rh2BG382700 Rh2BG382900 Rh2CG361400 Rh2CG361600 Rh2CG361800 Rh2CG362200
rosa_wichuraiana	Rw0G018650 Rw0G018660 Rw2G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccB7I	CCANNNNNTGG	2 cut(s)	425, 443
AccII	CGCG	1 cut(s)	65
AciI	CCGC	4 cut(s)	65, 467, 498, 525
AclWI	GGATC	1 cut(s)	436
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	1 cut(s)	442
AfiI	CCNNNNNNNGG	4 cut(s)	407, 425, 443, 467
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	16, 230
AjnI	CCWGG	2 cut(s)	400, 424
AloI	GAACNNNNNNTCC	6 cut(s)	104, 136, 442, 474, 493, 525
AluBI	AGCT	3 cut(s)	169, 221, 515
AluI	AGCT	3 cut(s)	169, 221, 515
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	436
AlwNI	CAGNNNCTG	2 cut(s)	221, 425
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	47, 185, 221, 374
ApoI	RAATTY	1 cut(s)	173
AsiGI	ACCGGT	1 cut(s)	140
AspS9I	GGNCC	3 cut(s)	112, 302, 474
AsuHPI	GGTGA	2 cut(s)	95, 341
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	3 cut(s)	112, 302, 474
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	4 cut(s)	34, 172, 208, 361
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	2 cut(s)	402, 426
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	5 cut(s)	48, 186, 222, 375, 525
BlsI	GCNGC	5 cut(s)	49, 187, 223, 376, 526
BmcAI	AGTACT	1 cut(s)	442
Bme1390I	CCNGG	2 cut(s)	402, 426
Bme18I	GGWCC	3 cut(s)	112, 302, 474
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	3 cut(s)	112, 302, 474
BmiI	GGNNCC	5 cut(s)	114, 406, 451, 475, 502
BmrFI	CCNGG	2 cut(s)	402, 426
BoxI	GACNNNNGTC	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	52
BpmI	CTGGAG	3 cut(s)	408, 465, 495
BsaI	GGTCTC	1 cut(s)	97
BsaWI	WCCGGW	2 cut(s)	140, 274
BsaXI	ACNNNNNCTCC	6 cut(s)	256, 286, 442, 472, 493, 523
Bsc4I	CCNNNNNNNGG	4 cut(s)	407, 425, 443, 467
Bse118I	RCCGGY	2 cut(s)	140, 407
Bse1I	ACTGG	3 cut(s)	304, 391, 448
BseBI	CCWGG	2 cut(s)	402, 426
BseLI	CCNNNNNNNGG	4 cut(s)	407, 425, 443, 467
BseNI	ACTGG	3 cut(s)	304, 391, 448
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	4 cut(s)	34, 172, 208, 361
BseYI	CCCAGC	2 cut(s)	188, 418
BsgI	GTGCAG	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	404
BshTI	ACCGGT	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	4 cut(s)	6, 141, 275, 408
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	4 cut(s)	407, 425, 443, 467
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	487
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	428
BspACI	CCGC	4 cut(s)	65, 467, 498, 525
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	5 cut(s)	114, 406, 451, 475, 502
BspPI	GGATC	1 cut(s)	436
BspT107I	GGYRCC	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	97
BsrFI	RCCGGY	2 cut(s)	140, 407
BsrI	ACTGG	3 cut(s)	304, 391, 448
BssAI	RCCGGY	2 cut(s)	140, 407
BssMI	GATC	1 cut(s)	428
Bst2UI	CCWGG	2 cut(s)	402, 426
Bst4CI	ACNGT	5 cut(s)	22, 236, 268, 325, 367
BstEII	GGTNACC	1 cut(s)	329
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	1 cut(s)	431
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	428
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 419, 521, 578
BstNI	CCWGG	2 cut(s)	402, 426
BstPAI	GACNNNNGTC	1 cut(s)	336
BstPI	GGTNACC	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	400, 424
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	4 cut(s)	34, 172, 208, 361
BstV2I	GAAGAC	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	3 cut(s)	297, 363, 462
CaiI	CAGNNNCTG	2 cut(s)	221, 425
Cfr10I	RCCGGY	2 cut(s)	140, 407
Cfr13I	GGNCC	3 cut(s)	112, 302, 474
Csp6I	GTAC	1 cut(s)	441
CspAI	ACCGGT	1 cut(s)	140
CviAII	CATG	2 cut(s)	197, 262
CviJI	RGCY	7 cut(s)	5, 137, 169, 221, 258, 492, 515
CviKI_1	RGCY	7 cut(s)	5, 137, 169, 221, 258, 492, 515
CviQI	GTAC	1 cut(s)	441
DpnI	GATC	1 cut(s)	430
DpnII	GATC	1 cut(s)	428
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	3 cut(s)	112, 302, 474
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	116
Eco91I	GGTNACC	1 cut(s)	329
EcoICRI	GAGCTC	1 cut(s)	169
EcoO65I	GGTNACC	1 cut(s)	329
EcoRII	CCWGG	2 cut(s)	400, 424
EcoT38I	GRGCYC	1 cut(s)	171
FaeI	CATG	2 cut(s)	200, 265
FaiI	YATR	5 cut(s)	110, 126, 198, 263, 287
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	2 cut(s)	196, 261
FauI	CCCGC	1 cut(s)	460
Fnu4HI	GCNGC	5 cut(s)	48, 186, 222, 375, 525
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	5 cut(s)	48, 186, 222, 375, 525
FspBI	CTAG	1 cut(s)	495
GluI	GCNGC	5 cut(s)	48, 186, 222, 375, 525
GsaI	CCCAGC	2 cut(s)	192, 422
GsuI	CTGGAG	3 cut(s)	408, 465, 495
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	6, 141, 275, 408
Hin1II	CATG	2 cut(s)	200, 265
HpaII	CCGG	4 cut(s)	6, 141, 275, 408
HphI	GGTGA	2 cut(s)	95, 341
Hpy188I	TCNGA	1 cut(s)	217
Hpy99I	CGWCG	2 cut(s)	167, 329
HpyAV	CCTTC	1 cut(s)	495
HpyCH4III	ACNGT	5 cut(s)	22, 236, 268, 325, 367
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	3 cut(s)	224, 321, 383
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 419, 521, 578
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	200, 265
Kzo9I	GATC	1 cut(s)	428
Lsp1109I	GCAGC	4 cut(s)	34, 172, 208, 361
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	2 cut(s)	22, 329
MalI	GATC	1 cut(s)	430
MboI	GATC	1 cut(s)	428
MboII	GAAGA	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	2 cut(s)	173, 282
MnlI	CCTC	7 cut(s)	61, 186, 282, 383, 440, 468, 541
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	4 cut(s)	6, 141, 275, 408
MspR9I	CCNGG	2 cut(s)	402, 426
MvaI	CCWGG	2 cut(s)	402, 426
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	4 cut(s)	380, 419, 521, 578
NdeII	GATC	1 cut(s)	428
NlaIII	CATG	2 cut(s)	200, 265
NlaIV	GGNNCC	5 cut(s)	114, 406, 451, 475, 502
NmuCI	GTSAC	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PflMI	CCANNNNNTGG	2 cut(s)	425, 443
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	5 cut(s)	49, 187, 223, 376, 526
PshAI	GACNNNNGTC	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	2 cut(s)	400, 424
PspEI	GGTNACC	1 cut(s)	329
PspFI	CCCAGC	2 cut(s)	188, 418
PspGI	CCWGG	2 cut(s)	400, 424
PspN4I	GGNNCC	5 cut(s)	114, 406, 451, 475, 502
PspPI	GGNCC	3 cut(s)	112, 302, 474
PstNI	CAGNNNCTG	2 cut(s)	221, 425
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
SacI	GAGCTC	1 cut(s)	171
SatI	GCNGC	5 cut(s)	48, 186, 222, 375, 525
Sau3AI	GATC	1 cut(s)	428
Sau96I	GGNCC	3 cut(s)	112, 302, 474
ScaI	AGTACT	1 cut(s)	442
ScrFI	CCNGG	2 cut(s)	402, 426
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	9 cut(s)	29, 109, 171, 223, 394, 427, 487, 517, 541
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	3 cut(s)	112, 302, 474
Sse9I	AATT	2 cut(s)	173, 282
SsiI	CCGC	4 cut(s)	65, 467, 498, 525
SspMI	CTAG	1 cut(s)	495
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	400, 424
TaaI	ACNGT	5 cut(s)	22, 236, 268, 325, 367
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	171
TasI	AATT	2 cut(s)	173, 282
TatI	WGTACW	1 cut(s)	440
TauI	GCSGC	1 cut(s)	527
TscAI	CASTG	3 cut(s)	304, 370, 469
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	4 cut(s)	47, 185, 221, 374
Tsp45I	GTSAC	1 cut(s)	329
TspGWI	ACGGA	2 cut(s)	107, 143
TspRI	CASTG	3 cut(s)	304, 370, 469
Van91I	CCANNNNNTGG	2 cut(s)	425, 443
VpaK11BI	GGWCC	3 cut(s)	112, 302, 474
XapI	RAATTY	1 cut(s)	173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XspI	CTAG	1 cut(s)	495
ZrmI	AGTACT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.