Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001282

Physical Location & Seq

Genomic Coordinates Reverse (-)

23018611 .. 23019979

Gene Structure 1369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29800.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAGAGCCAGAAGAAAATGATGGTTGTCTTTGGGTTAGTTACAGCTGTGTTCTTACAGAGTGCGGCGGCACAGACGGTGCATGTGGTAGGGGATAGCGTAGGCTGGAACATACCACAGAACGGTGCACAAGACTATGTTACATGGGCGTCTAGTCAGACTTTCGTAGTTGGTGATATTCTGAGTTTCAACTTCGCAACAAACGCACACGACGTTGTGGAAGTACCCAAAGCATCGTTCGACTCTTGCAGCTCCACCAACGCAATCGGCAGCACCGTCACCACCGGCCCGGCCAACGTCACTCTCGCCTCCGCCGGTGAACACTACTACATCTGCACTGTCGGCAGCCACTGCCAGTCCGGCCAGAAGCTTGCCATCACCGTCTCAGCATCCGCCACGTCACCAGGAACCTCCCCTTCTGCACCATCTCCATCTACCACCACGCCGGGGGTGACTGCTGAGCCACCAAGCTCTTCTCCTGCCGTTCGGGCTGGTCTTGTTTTGTGCTTGTTGTCCCTTGTAATGGGATTCTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

180

Amino Acids

18.32

Weight (kDa)

5.32

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	147 - 233	6.4e-25	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20230
fragaria_vesca	FvH4_6g29770 FvH4_6g29800 FvH4_6g29800
malus_domestica	MD17G1210900.v1.1 MD17G1211000.v1.1 MD17G1211100.v1.1 MD17G1211200.v1.1 MD17G1211300.v1.1
prunus_persica	Prupe.3G086400_v2.0.a1 Prupe.3G086500_v2.0.a1 Prupe.3G112300_v2.0.a1 Prupe.7G246300_v2.0.a1
pyrus_communis	pycom17g21600 pycom17g21610
rosa_chinensis	RchiOBHm_Chr2g0135581 RchiOBHm_Chr2g0135591 RchiOBHm_Chr2g0135601
rosa_laevigata	RLG00000019415 RLG00000019417 RLG00000019468 RLG00000019470 RLG00000019471 RLG00000019472
rosa_multiflora	Rmu_sc0002398.1_g000005 Rmu_sc0002398.1_g000011 Rmu_sc0002792.1_g000051 Rmu_sc0006464.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109040 Rroxscaffold_2G00109060 Rroxscaffold_2G00109140 Rroxscaffold_2G00109150 Rroxscaffold_2G00109160 Rroxscaffold_4G00301440
rosa_rugosa	Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325600 Rorug02G0325800
rosa_samantha	Rh1BG222100 Rh1BG222500 Rh1DG248800 Rh1DG249300 Rh2AG376500 Rh2BG382500 Rh2BG382700 Rh2BG382900 Rh2CG361400 Rh2CG361600 Rh2CG361800 Rh2CG362200
rosa_wichuraiana	Rw0G018650 Rw0G018660 Rw2G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	65, 68, 312, 393
AcoI	YGGCCR	2 cut(s)	291, 361
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	3 cut(s)	122, 447, 523
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	399
AjnI	CCWGG	1 cut(s)	403
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	4 cut(s)	47, 252, 370, 471
AluI	AGCT	4 cut(s)	47, 252, 370, 471
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	388
Alw44I	GTGCAC	1 cut(s)	126
AlwNI	CAGNNNCTG	1 cut(s)	351
AoxI	GGCC	3 cut(s)	286, 291, 361
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	3 cut(s)	249, 270, 345
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	2 cut(s)	290, 447
AsuHPI	GGTGA	6 cut(s)	185, 271, 329, 370, 393, 463
BaeGI	GKGCMC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	261, 282, 357
BccI	CCATC	4 cut(s)	16, 383, 433, 439
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	1 cut(s)	405
BcnI	CCSGG	2 cut(s)	290, 447
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	1 cut(s)	153
BglI	GCCNNNNNGGC	2 cut(s)	360, 488
BisI	GCNGC	5 cut(s)	66, 69, 250, 271, 346
BlpI	GCTNAGC	1 cut(s)	459
BlsI	GCNGC	5 cut(s)	67, 70, 251, 272, 347
Bme1390I	CCNGG	3 cut(s)	290, 405, 447
BmgBI	CACGTC	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	409
BmrFI	CCNGG	3 cut(s)	290, 405, 447
BmsI	GCATC	2 cut(s)	242, 398
Bpu1102I	GCTNAGC	1 cut(s)	459
BpuMI	CCSGG	2 cut(s)	290, 447
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 447, 523
Bse118I	RCCGGY	2 cut(s)	284, 314
Bse1I	ACTGG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	1 cut(s)	389
BseLI	CCNNNNNNNGG	3 cut(s)	122, 447, 523
BseMII	CTCAG	3 cut(s)	173, 399, 450
BseNI	ACTGG	1 cut(s)	355
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	3 cut(s)	261, 282, 357
BsgI	GTGCAG	2 cut(s)	319, 405
BshFI	GGCC	3 cut(s)	288, 293, 363
BsiHKAI	GWGCWC	1 cut(s)	130
BsiSI	CCGG	5 cut(s)	285, 290, 315, 360, 446
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	3 cut(s)	122, 447, 523
BsmAI	GTCTC	1 cut(s)	388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	499
BsnI	GGCC	3 cut(s)	288, 293, 363
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp1720I	GCTNAGC	1 cut(s)	459
BspACI	CCGC	4 cut(s)	65, 68, 312, 393
BspANI	GGCC	3 cut(s)	288, 293, 363
BspCNI	CTCAG	3 cut(s)	174, 398, 451
BspLI	GGNNCC	1 cut(s)	409
BspQI	GCTCTTC	1 cut(s)	478
BsrFI	RCCGGY	2 cut(s)	284, 314
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	2 cut(s)	284, 314
BssECI	CCNNGG	1 cut(s)	446
BssNI	GRCGYC	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	5 cut(s)	79, 125, 277, 340, 382
Bst6I	CTCTTC	1 cut(s)	478
BstACI	GRCGYC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	3 cut(s)	182, 385, 459
BstF5I	GGATG	1 cut(s)	389
BstMAI	GTCTC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 342, 351, 360, 488
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	3 cut(s)	288, 403, 445
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	3 cut(s)	261, 282, 357
BsuRI	GGCC	3 cut(s)	288, 293, 363
BtrI	CACGTC	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	389
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	2 cut(s)	336, 349
Cac8I	GCNNGC	1 cut(s)	372
CaiI	CAGNNNCTG	1 cut(s)	351
Cfr10I	RCCGGY	2 cut(s)	284, 314
Cfr13I	GGNCC	1 cut(s)	287
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	2 cut(s)	83, 144
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	3 cut(s)	182, 385, 459
EaeI	YGGCCR	2 cut(s)	291, 361
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
EciI	GGCGGA	2 cut(s)	301, 382
EcoRII	CCWGG	1 cut(s)	403
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	2 cut(s)	86, 147
FaiI	YATR	4 cut(s)	84, 113, 138, 145
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	2 cut(s)	82, 143
Fnu4HI	GCNGC	5 cut(s)	66, 69, 250, 271, 346
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	5 cut(s)	66, 69, 250, 271, 346
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	5 cut(s)	66, 69, 250, 271, 346
HaeIII	GGCC	3 cut(s)	288, 293, 363
HapII	CCGG	5 cut(s)	285, 290, 315, 360, 446
HgaI	GACGC	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	86, 147
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	242, 528
HpaII	CCGG	5 cut(s)	285, 290, 315, 360, 446
HphI	GGTGA	6 cut(s)	185, 271, 329, 370, 393, 463
Hpy166II	GTNNAC	2 cut(s)	128, 320
Hpy188I	TCNGA	2 cut(s)	159, 183
Hpy8I	GTNNAC	2 cut(s)	128, 320
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	426
HpyCH4III	ACNGT	5 cut(s)	79, 125, 277, 340, 382
HpyCH4IV	ACGT	3 cut(s)	213, 297, 398
HpyCH4V	TGCA	5 cut(s)	82, 128, 249, 336, 422
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 342, 351, 360, 488
HpyF3I	CTNAG	3 cut(s)	182, 385, 459
HpySE526I	ACGT	3 cut(s)	213, 297, 398
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	86, 147
LguI	GCTCTTC	1 cut(s)	478
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	3 cut(s)	261, 282, 357
LweI	GCATC	2 cut(s)	242, 398
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	3 cut(s)	213, 297, 398
MaeIII	GTNAC	6 cut(s)	40, 139, 277, 298, 399, 451
MboII	GAAGA	3 cut(s)	25, 465, 523
MhlI	GDGCHC	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	2 cut(s)	319, 421
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	5 cut(s)	285, 290, 315, 360, 446
MspR9I	CCNGG	3 cut(s)	290, 405, 447
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	5 cut(s)	203, 342, 351, 360, 488
NciI	CCSGG	2 cut(s)	290, 447
NlaIII	CATG	2 cut(s)	86, 147
NlaIV	GGNNCC	1 cut(s)	409
NmuCI	GTSAC	4 cut(s)	277, 298, 399, 451
NspI	RCATGY	1 cut(s)	86
PciSI	GCTCTTC	1 cut(s)	478
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 273
PfeI	GAWTC	1 cut(s)	528
PkrI	GCNGC	5 cut(s)	67, 70, 251, 272, 347
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	409
PspPI	GGNCC	1 cut(s)	287
PstNI	CAGNNNCTG	1 cut(s)	351
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	478
SatI	GCNGC	5 cut(s)	66, 69, 250, 271, 346
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	290, 405, 447
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	8 cut(s)	49, 216, 254, 300, 372, 401, 413, 473
SfaNI	GCATC	2 cut(s)	242, 398
SgrAI	CRCCGGYG	1 cut(s)	314
SsiI	CCGC	4 cut(s)	65, 68, 312, 393
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	3 cut(s)	288, 403, 445
TaaI	ACNGT	5 cut(s)	79, 125, 277, 340, 382
TaiI	ACGT	3 cut(s)	216, 300, 401
TaqI	TCGA	1 cut(s)	240
TauI	GCSGC	2 cut(s)	68, 71
TfiI	GAWTC	1 cut(s)	528
TscAI	CASTG	2 cut(s)	343, 356
TseFI	GTSAC	4 cut(s)	277, 298, 399, 451
TseI	GCWGC	3 cut(s)	249, 270, 345
Tsp45I	GTSAC	4 cut(s)	277, 298, 399, 451
TspRI	CASTG	2 cut(s)	343, 356
VneI	GTGCAC	1 cut(s)	126
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.