Prupe.3G086500_v2.0.a1

Cucumber peeling cupredoxin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001282
Physical Location & Seq
Forward (+)
6393027 .. 6397107
4081 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G086500.1

Sequence Viewer

Length: 684 bp
ATGGAGAGCAAAATGGTGGTTGTTTTTGGCGTCTTTGTGGCCGTATTTGTGCAATGTGTAGCAGCACAGACAGTGCATGTGGTGGGAGATAGCTTAGGTTGGACCATTCCACAATCTGGGCAACAATATGTCACTTGGGCATCTGCTAACAAGTTCGCTGTTGGTGATTTTCTCATAATGCCAGATGTCATAATTTTATTAGTCCGTACTACCACATGGCACTGCCACGTGGTAGTACCGTATCACAGTATAATTTCTCCTCACACTAGACGTTCCTTAATAATTCTTCAGTTTTTCAACTTCGCCACCAACGCACACGATGTACAAGAAGTACCCTATGCATCGTTCGACTCATGCAGCTCGGACAACACAATTGGCTCGTCCATCACAACAGGCCCAGCCAACGTCACGCTCACCTCAGCAGGCGACAACTACTTCATCTGCACTTATGGCACCCACTGCCAGTCAGGCCAGAAGCTAGCCATCACCGTCTCAGCCGCCGCCCCTGGAGCCTCGCCCTCTGGACCAACTTCTGCACCACCACCACCACCACCGCCTACTACCCCTCCTACCACATCCATCACCGTCCTCGAACGACCCTGTTGCTTGTGCTCCAGTCAAGCCATCGTCACCATCACCGTCCACGGCTGGGGGGGGCCAACCCGGGTCTTGCCCGCCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

228

Amino Acids

24.0

Weight (kDa)

6.41

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 452
AccB7I CCANNNNNTGG 1 cut(s) 116
AciI CCGC 4 cut(s) 498, 501, 554, 675
AcoI YGGCCR 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 272
AcvI CACGTG 1 cut(s) 229
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 4 cut(s) 208, 237, 324, 333
AfiI CCNNNNNNNGG 2 cut(s) 116, 649
AgsI TTSAA 1 cut(s) 298
AjnI CCWGG 1 cut(s) 505
AluBI AGCT 3 cut(s) 93, 360, 478
AluI AGCT 3 cut(s) 93, 360, 478
Alw21I GWGCWC 1 cut(s) 614
Alw26I GTCTC 1 cut(s) 496
Ama87I CYCGRG 1 cut(s) 663
AoxI GGCC 4 cut(s) 39, 394, 469, 656
ApeKI GCWGC 2 cut(s) 62, 357
AspS9I GGNCC 4 cut(s) 102, 395, 524, 656
AsuC2I CCSGG 2 cut(s) 664, 665
AsuHPI GGTGA 6 cut(s) 176, 406, 478, 574, 622, 628
AsuNHI GCTAGC 1 cut(s) 478
AvaI CYCGRG 1 cut(s) 663
AvaII GGWCC 2 cut(s) 102, 524
BanI GGYRCC 1 cut(s) 452
BbrPI CACGTG 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 614
BbvCI CCTCAGC 1 cut(s) 418
BbvI GCAGC 2 cut(s) 74, 369
BccI CCATC 5 cut(s) 392, 491, 587, 632, 641
BceAI ACGGC 2 cut(s) 26, 661
BcgI CGANNNNNNTGC 2 cut(s) 585, 619
BciT130I CCWGG 1 cut(s) 507
BcnI CCSGG 2 cut(s) 664, 665
BcoDI GTCTC 1 cut(s) 496
BfaI CTAG 2 cut(s) 267, 479
BglI GCCNNNNNGGC 1 cut(s) 468
BisI GCNGC 4 cut(s) 63, 358, 498, 501
BlsI GCNGC 4 cut(s) 64, 359, 499, 502
Bme1390I CCNGG 3 cut(s) 507, 664, 665
Bme18I GGWCC 2 cut(s) 102, 524
BmeT110I CYCGRG 1 cut(s) 663
BmgT120I GGNCC 4 cut(s) 102, 395, 524, 656
BmiI GGNNCC 3 cut(s) 454, 511, 657
BmrFI CCNGG 3 cut(s) 507, 664, 665
BmsI GCATC 2 cut(s) 149, 350
BmtI GCTAGC 1 cut(s) 482
BpmI CTGGAG 2 cut(s) 528, 598
Bpu10I CCTNAGC 2 cut(s) 94, 418
BpuMI CCSGG 2 cut(s) 664, 665
BsaAI YACGTR 1 cut(s) 229
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 3 cut(s) 505, 643, 663
BsaXI ACNNNNNCTCC 2 cut(s) 550, 580
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 649
Bse1I ACTGG 2 cut(s) 463, 615
Bse3DI GCAATG 1 cut(s) 59
BseBI CCWGG 1 cut(s) 507
BseDI CCNNGG 3 cut(s) 505, 643, 663
BseGI GGATG 1 cut(s) 575
BseLI CCNNNNNNNGG 2 cut(s) 116, 649
BseMI GCAATG 1 cut(s) 59
BseMII CTCAG 2 cut(s) 432, 507
BseNI ACTGG 2 cut(s) 463, 615
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 2 cut(s) 74, 369
BseYI CCCAGC 2 cut(s) 397, 648
BsgI GTGCAG 2 cut(s) 427, 519
BshFI GGCC 4 cut(s) 41, 396, 471, 658
BshNI GGYRCC 1 cut(s) 452
BsiHKAI GWGCWC 1 cut(s) 614
BsiHKCI CYCGRG 1 cut(s) 663
BsiSI CCGG 1 cut(s) 664
BslI CCNNNNNNNGG 2 cut(s) 116, 649
BsmAI GTCTC 1 cut(s) 496
BsmBI CGTCTC 1 cut(s) 496
BsnI GGCC 4 cut(s) 41, 396, 471, 658
BsoBI CYCGRG 1 cut(s) 663
Bsp1286I GDGCHC 1 cut(s) 614
Bsp1407I TGTACA 1 cut(s) 322
BspACI CCGC 4 cut(s) 498, 501, 554, 675
BspANI GGCC 4 cut(s) 41, 396, 471, 658
BspCNI CTCAG 2 cut(s) 431, 506
BspLI GGNNCC 3 cut(s) 454, 511, 657
BspOI GCTAGC 1 cut(s) 482
BspT107I GGYRCC 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 322
BsrI ACTGG 2 cut(s) 463, 615
BssECI CCNNGG 3 cut(s) 505, 643, 663
BssNI GRCGYC 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 507
Bst4CI ACNGT 6 cut(s) 73, 240, 248, 490, 586, 640
BstACI GRCGYC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 459
BstAUI TGTACA 1 cut(s) 322
BstBAI YACGTR 1 cut(s) 229
BstC8I GCNNGC 3 cut(s) 424, 480, 675
BstDEI CTNAG 3 cut(s) 94, 418, 493
BstDSI CCRYGG 1 cut(s) 643
BstF5I GGATG 1 cut(s) 575
BstMAI GTCTC 1 cut(s) 496
BstMWI GCNNNNNNNGC 5 cut(s) 311, 450, 459, 468, 509
BstNI CCWGG 1 cut(s) 507
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 3 cut(s) 505, 662, 663
BstV1I GCAGC 2 cut(s) 74, 369
BsuRI GGCC 4 cut(s) 41, 396, 471, 658
BtgI CCRYGG 1 cut(s) 643
BtsCI GGATG 1 cut(s) 575
BtsI GCAGTG 2 cut(s) 220, 457
BtsIMutI CAGTG 3 cut(s) 78, 220, 457
Cac8I GCNNGC 3 cut(s) 424, 480, 675
Cfr13I GGNCC 4 cut(s) 102, 395, 524, 656
Cfr9I CCCGGG 1 cut(s) 663
CseI GACGC 1 cut(s) 19
Csp6I GTAC 4 cut(s) 207, 236, 323, 332
CviAII CATG 3 cut(s) 77, 216, 354
CviQI GTAC 4 cut(s) 207, 236, 323, 332
DdeI CTNAG 3 cut(s) 94, 418, 493
EaeI YGGCCR 1 cut(s) 39
Eco47I GGWCC 2 cut(s) 102, 524
Eco57I CTGAAG 1 cut(s) 272
Eco72I CACGTG 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 663
EcoRII CCWGG 1 cut(s) 505
EcoT22I ATGCAT 1 cut(s) 343
Esp3I CGTCTC 1 cut(s) 496
FaeI CATG 3 cut(s) 80, 219, 357
FaiI YATR 9 cut(s) 78, 129, 176, 191, 217, 251, 339, 355, 450
FatI CATG 3 cut(s) 76, 215, 353
FauI CCCGC 1 cut(s) 682
Fnu4HI GCNGC 4 cut(s) 63, 358, 498, 501
FokI GGATG 1 cut(s) 562
Fsp4HI GCNGC 4 cut(s) 63, 358, 498, 501
FspBI CTAG 2 cut(s) 267, 479
GluI GCNGC 4 cut(s) 63, 358, 498, 501
GsaI CCCAGC 2 cut(s) 401, 652
GsuI CTGGAG 2 cut(s) 528, 598
HaeIII GGCC 4 cut(s) 41, 396, 471, 658
HapII CCGG 1 cut(s) 664
HgaI GACGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 3 cut(s) 80, 219, 357
HinfI GANTC 1 cut(s) 350
HpaII CCGG 1 cut(s) 664
HphI GGTGA 6 cut(s) 176, 406, 478, 574, 622, 628
Hpy166II GTNNAC 1 cut(s) 643
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 1 cut(s) 522
Hpy8I GTNNAC 1 cut(s) 643
HpyCH4III ACNGT 6 cut(s) 73, 240, 248, 490, 586, 640
HpyCH4IV ACGT 3 cut(s) 228, 271, 405
HpyCH4V TGCA 6 cut(s) 52, 76, 341, 357, 444, 536
HpyF10VI GCNNNNNNNGC 5 cut(s) 311, 450, 459, 468, 509
HpyF3I CTNAG 3 cut(s) 94, 418, 493
HpySE526I ACGT 3 cut(s) 228, 271, 405
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 3 cut(s) 80, 219, 357
LmnI GCTCC 2 cut(s) 509, 617
Lsp1109I GCAGC 2 cut(s) 74, 369
LweI GCATC 2 cut(s) 149, 350
MaeI CTAG 2 cut(s) 267, 479
MaeII ACGT 3 cut(s) 228, 271, 405
MaeIII GTNAC 3 cut(s) 130, 406, 628
MboII GAAGA 1 cut(s) 278
MfeI CAATTG 1 cut(s) 372
MhlI GDGCHC 1 cut(s) 614
MluCI AATT 4 cut(s) 192, 252, 282, 372
MlyI GAGTC 1 cut(s) 344
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 6 cut(s) 270, 427, 523, 529, 576, 599
Mph1103I ATGCAT 1 cut(s) 343
MseI TTAA 1 cut(s) 278
MspI CCGG 1 cut(s) 664
MspR9I CCNGG 3 cut(s) 507, 664, 665
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 507
MwoI GCNNNNNNNGC 5 cut(s) 311, 450, 459, 468, 509
NciI CCSGG 2 cut(s) 664, 665
NheI GCTAGC 1 cut(s) 478
NlaIII CATG 3 cut(s) 80, 219, 357
NlaIV GGNNCC 3 cut(s) 454, 511, 657
NmuCI GTSAC 3 cut(s) 130, 406, 628
NsiI ATGCAT 1 cut(s) 343
NspI RCATGY 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 116
PkrI GCNGC 4 cut(s) 64, 359, 499, 502
PleI GAGTC 1 cut(s) 344
PmaCI CACGTG 1 cut(s) 229
PmlI CACGTG 1 cut(s) 229
PpsI GAGTC 1 cut(s) 344
Ppu21I YACGTR 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 505
PspCI CACGTG 1 cut(s) 229
PspFI CCCAGC 2 cut(s) 397, 648
PspGI CCWGG 1 cut(s) 505
PspN4I GGNNCC 3 cut(s) 454, 511, 657
PspPI GGNCC 4 cut(s) 102, 395, 524, 656
RsaI GTAC 4 cut(s) 208, 237, 324, 333
RsaNI GTAC 4 cut(s) 207, 236, 323, 332
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 4 cut(s) 63, 358, 498, 501
Sau96I GGNCC 4 cut(s) 102, 395, 524, 656
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 3 cut(s) 507, 664, 665
SduI GDGCHC 1 cut(s) 614
SetI ASST 8 cut(s) 95, 100, 231, 274, 362, 408, 419, 480
SfaNI GCATC 2 cut(s) 149, 350
SinI GGWCC 2 cut(s) 102, 524
SmaI CCCGGG 1 cut(s) 665
Sse9I AATT 4 cut(s) 192, 252, 282, 372
SsiI CCGC 4 cut(s) 498, 501, 554, 675
SspMI CTAG 2 cut(s) 267, 479
StyD4I CCNGG 3 cut(s) 505, 662, 663
TaaI ACNGT 6 cut(s) 73, 240, 248, 490, 586, 640
TaiI ACGT 3 cut(s) 231, 274, 408
TaqI TCGA 2 cut(s) 348, 591
TasI AATT 4 cut(s) 192, 252, 282, 372
TatI WGTACW 1 cut(s) 322
TauI GCSGC 2 cut(s) 500, 503
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 3 cut(s) 78, 227, 464
TseFI GTSAC 3 cut(s) 130, 406, 628
TseI GCWGC 2 cut(s) 62, 357
Tsp45I GTSAC 3 cut(s) 130, 406, 628
TspDTI ATGAA 1 cut(s) 427
TspGWI ACGGA 1 cut(s) 194
TspMI CCCGGG 1 cut(s) 663
TspRI CASTG 3 cut(s) 78, 227, 464
Van91I CCANNNNNTGG 1 cut(s) 116
VpaK11BI GGWCC 2 cut(s) 102, 524
XceI RCATGY 1 cut(s) 80
XmaI CCCGGG 1 cut(s) 663
XspI CTAG 2 cut(s) 267, 479
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.