Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002792.1

Orthogroup ID

OG0001282

Physical Location & Seq

Genomic Coordinates Forward (+)

200075 .. 200803

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002792.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggagagccagaagaagatgatggttgtttttgggttagttgcggctgtgtgtttacagtgtgtggcggcactgacggcccatgtgctggaaagctggtccgtaccaccaccgatcgactttgacacatggaagtctgctttcaagtacgagaaacctttatacgacgttgtggaagtcgcctatgacacttacgacaattgcaacaacatcatccaaatcgccagcagcaacctcagccaaatcgccagcaccaacaacgccggcctggccgtcctcactctcttcactggcgaccactacttcacctgtccttcgggcggccactgccagtccggcctcaagctcaccatcaccgtctcagcacccggcacgtcacccggaccctccccttctgcaccatctacatctaccacaactaacaccacgccaggggtgaccgcggtgccgctgagctcttcatcccctactgctggggctggtttcgttttgtgctcgttgtcccttgtagtgggattgttcgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

175

Amino Acids

18.17

Weight (kDa)

5.07

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20230
fragaria_vesca	FvH4_6g29770 FvH4_6g29800 FvH4_6g29800
malus_domestica	MD17G1210900.v1.1 MD17G1211000.v1.1 MD17G1211100.v1.1 MD17G1211200.v1.1 MD17G1211300.v1.1
prunus_persica	Prupe.3G086400_v2.0.a1 Prupe.3G086500_v2.0.a1 Prupe.3G112300_v2.0.a1 Prupe.7G246300_v2.0.a1
pyrus_communis	pycom17g21600 pycom17g21610
rosa_chinensis	RchiOBHm_Chr2g0135581 RchiOBHm_Chr2g0135591 RchiOBHm_Chr2g0135601
rosa_laevigata	RLG00000019415 RLG00000019417 RLG00000019468 RLG00000019470 RLG00000019471 RLG00000019472
rosa_multiflora	Rmu_sc0002398.1_g000005 Rmu_sc0002398.1_g000011 Rmu_sc0002792.1_g000051 Rmu_sc0006464.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109040 Rroxscaffold_2G00109060 Rroxscaffold_2G00109140 Rroxscaffold_2G00109150 Rroxscaffold_2G00109160 Rroxscaffold_4G00301440
rosa_rugosa	Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325600 Rorug02G0325800
rosa_samantha	Rh1BG222100 Rh1BG222500 Rh1DG248800 Rh1DG249300 Rh2AG376500 Rh2BG382500 Rh2BG382700 Rh2BG382900 Rh2CG361400 Rh2CG361600 Rh2CG361800 Rh2CG362200
rosa_wichuraiana	Rw0G018650 Rw0G018660 Rw2G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	445
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccII	CGCG	1 cut(s)	443
AciI	CCGC	6 cut(s)	44, 68, 321, 441, 443, 449
AcoI	YGGCCR	2 cut(s)	270, 322
AfaI	GTAC	2 cut(s)	105, 149
AfiI	CCNNNNNNNGG	5 cut(s)	88, 320, 432, 473, 511
AgsI	TTSAA	1 cut(s)	145
AjiI	CACGTC	1 cut(s)	375
AjnI	CCWGG	2 cut(s)	267, 430
AluBI	AGCT	3 cut(s)	96, 346, 456
AluI	AGCT	3 cut(s)	96, 346, 456
Alw21I	GWGCWC	2 cut(s)	458, 497
Alw26I	GTCTC	1 cut(s)	364
AoxI	GGCC	5 cut(s)	78, 265, 270, 322, 337
ApeKI	GCWGC	1 cut(s)	228
AspS9I	GGNCC	3 cut(s)	79, 99, 383
AsuC2I	CCSGG	2 cut(s)	369, 381
AsuHPI	GGTGA	5 cut(s)	298, 340, 346, 369, 448
AvaII	GGWCC	2 cut(s)	99, 383
BanI	GGYRCC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	458
Bbv12I	GWGCWC	2 cut(s)	458, 497
BbvCI	CCTCAGC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	3 cut(s)	16, 359, 409
BceAI	ACGGC	2 cut(s)	93, 257
BciT130I	CCWGG	2 cut(s)	269, 432
BcnI	CCSGG	2 cut(s)	369, 381
BcoDI	GTCTC	1 cut(s)	364
BglI	GCCNNNNNGGC	2 cut(s)	269, 336
BisI	GCNGC	5 cut(s)	45, 69, 229, 322, 449
BlpI	GCTNAGC	1 cut(s)	452
BlsI	GCNGC	5 cut(s)	46, 70, 230, 323, 450
Bme1390I	CCNGG	4 cut(s)	269, 369, 381, 432
Bme18I	GGWCC	2 cut(s)	99, 383
BmgBI	CACGTC	1 cut(s)	375
BmgT120I	GGNCC	3 cut(s)	79, 99, 383
BmiI	GGNNCC	2 cut(s)	385, 447
BmrFI	CCNGG	4 cut(s)	269, 369, 381, 432
Bpu10I	CCTNAGC	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	2 cut(s)	369, 381
BsaJI	CCNNGG	2 cut(s)	431, 441
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 320, 432, 473, 511
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	2 cut(s)	295, 331
BseBI	CCWGG	2 cut(s)	269, 432
BseDI	CCNNGG	2 cut(s)	431, 441
BseGI	GGATG	2 cut(s)	213, 461
BseLI	CCNNNNNNNGG	5 cut(s)	88, 320, 432, 473, 511
BseMII	CTCAG	3 cut(s)	250, 375, 443
BseNI	ACTGG	2 cut(s)	295, 331
BseXI	GCAGC	1 cut(s)	240
BseYI	CCCAGC	1 cut(s)	473
BsgI	GTGCAG	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	443
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	5 cut(s)	80, 267, 272, 324, 339
BshNI	GGYRCC	1 cut(s)	445
BsiEI	CGRYCG	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	458, 497
BsiSI	CCGG	4 cut(s)	264, 336, 369, 381
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	5 cut(s)	88, 320, 432, 473, 511
BsmAI	GTCTC	1 cut(s)	364
BsmBI	CGTCTC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	487
BsnI	GGCC	5 cut(s)	80, 267, 272, 324, 339
Bsp1286I	GDGCHC	2 cut(s)	458, 497
Bsp143I	GATC	1 cut(s)	114
Bsp1720I	GCTNAGC	1 cut(s)	452
BspACI	CCGC	6 cut(s)	44, 68, 321, 441, 443, 449
BspANI	GGCC	5 cut(s)	80, 267, 272, 324, 339
BspCNI	CTCAG	3 cut(s)	249, 374, 444
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	2 cut(s)	385, 447
BspQI	GCTCTTC	1 cut(s)	463
BspT107I	GGYRCC	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	295, 331
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	431, 441
BssMI	GATC	1 cut(s)	114
Bst2UI	CCWGG	2 cut(s)	269, 432
Bst4CI	ACNGT	2 cut(s)	60, 358
Bst6I	CTCTTC	2 cut(s)	290, 463
BstC8I	GCNNGC	3 cut(s)	226, 250, 265
BstDEI	CTNAG	3 cut(s)	236, 361, 452
BstDSI	CCRYGG	1 cut(s)	441
BstEII	GGTNACC	1 cut(s)	436
BstF5I	GGATG	2 cut(s)	213, 461
BstFNI	CGCG	1 cut(s)	443
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	114
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 237, 269, 327, 336
BstNI	CCWGG	2 cut(s)	269, 432
BstPI	GGTNACC	1 cut(s)	436
BstSCI	CCNGG	4 cut(s)	267, 367, 379, 430
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	1 cut(s)	240
BsuRI	GGCC	5 cut(s)	80, 267, 272, 324, 339
BtgI	CCRYGG	1 cut(s)	441
BtrI	CACGTC	1 cut(s)	375
BtsCI	GGATG	2 cut(s)	213, 461
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	4 cut(s)	65, 71, 288, 325
Cac8I	GCNNGC	3 cut(s)	226, 250, 265
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	3 cut(s)	79, 99, 383
Cfr42I	CCGCGG	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	104, 148
CviAII	CATG	2 cut(s)	83, 129
CviQI	GTAC	2 cut(s)	104, 148
DdeI	CTNAG	3 cut(s)	236, 361, 452
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
EaeI	YGGCCR	2 cut(s)	270, 322
Eam1104I	CTCTTC	2 cut(s)	290, 463
EarI	CTCTTC	2 cut(s)	290, 463
Ecl136II	GAGCTC	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	458
Eco47I	GGWCC	2 cut(s)	99, 383
Eco53kI	GAGCTC	1 cut(s)	456
Eco91I	GGTNACC	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	456
EcoO65I	GGTNACC	1 cut(s)	436
EcoRII	CCWGG	2 cut(s)	267, 430
EcoT38I	GRGCYC	1 cut(s)	458
Esp3I	CGTCTC	1 cut(s)	364
FaeI	CATG	2 cut(s)	86, 132
FaiI	YATR	4 cut(s)	84, 130, 163, 186
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	2 cut(s)	82, 128
Fnu4HI	GCNGC	5 cut(s)	45, 69, 229, 322, 449
FokI	GGATG	2 cut(s)	200, 448
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	5 cut(s)	45, 69, 229, 322, 449
GluI	GCNGC	5 cut(s)	45, 69, 229, 322, 449
GsaI	CCCAGC	1 cut(s)	477
HaeIII	GGCC	5 cut(s)	80, 267, 272, 324, 339
HapII	CCGG	4 cut(s)	264, 336, 369, 381
Hin1II	CATG	2 cut(s)	86, 132
HpaII	CCGG	4 cut(s)	264, 336, 369, 381
HphI	GGTGA	5 cut(s)	298, 340, 346, 369, 448
Hpy166II	GTNNAC	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	56
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	324, 402
HpyCH4III	ACNGT	2 cut(s)	60, 358
HpyCH4IV	ACGT	2 cut(s)	168, 374
HpyCH4V	TGCA	2 cut(s)	204, 398
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 237, 269, 327, 336
HpyF3I	CTNAG	3 cut(s)	236, 361, 452
HpySE526I	ACGT	2 cut(s)	168, 374
Hsp92II	CATG	2 cut(s)	86, 132
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
KspI	CCGCGG	1 cut(s)	444
Kzo9I	GATC	1 cut(s)	114
LguI	GCTCTTC	1 cut(s)	463
Lsp1109I	GCAGC	1 cut(s)	240
MaeII	ACGT	2 cut(s)	168, 374
MaeIII	GTNAC	2 cut(s)	375, 436
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	4 cut(s)	25, 28, 277, 450
MfeI	CAATTG	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	458, 497
MluCI	AATT	1 cut(s)	199
MnlI	CCTC	4 cut(s)	245, 287, 350, 397
MroNI	GCCGGC	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	443, 451
MspI	CCGG	4 cut(s)	264, 336, 369, 381
MspR9I	CCNGG	4 cut(s)	269, 369, 381, 432
MunI	CAATTG	1 cut(s)	199
MvaI	CCWGG	2 cut(s)	269, 432
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	5 cut(s)	77, 237, 269, 327, 336
NaeI	GCCGGC	1 cut(s)	265
NciI	CCSGG	2 cut(s)	369, 381
NdeII	GATC	1 cut(s)	114
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	2 cut(s)	86, 132
NlaIV	GGNNCC	2 cut(s)	385, 447
NmuCI	GTSAC	2 cut(s)	375, 436
PciSI	GCTCTTC	1 cut(s)	463
PdiI	GCCGGC	1 cut(s)	265
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	5 cut(s)	46, 70, 230, 323, 450
Ple19I	CGATCG	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	458
Psp6I	CCWGG	2 cut(s)	267, 430
PspEI	GGTNACC	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	473
PspGI	CCWGG	2 cut(s)	267, 430
PspN4I	GGNNCC	2 cut(s)	385, 447
PspPI	GGNCC	3 cut(s)	79, 99, 383
PvuI	CGATCG	1 cut(s)	117
RsaI	GTAC	2 cut(s)	105, 149
RsaNI	GTAC	2 cut(s)	104, 148
SacI	GAGCTC	1 cut(s)	458
SacII	CCGCGG	1 cut(s)	444
SapI	GCTCTTC	1 cut(s)	463
SatI	GCNGC	5 cut(s)	45, 69, 229, 322, 449
Sau3AI	GATC	1 cut(s)	114
Sau96I	GGNCC	3 cut(s)	79, 99, 383
ScrFI	CCNGG	4 cut(s)	269, 369, 381, 432
SduI	GDGCHC	2 cut(s)	458, 497
SetI	ASST	8 cut(s)	98, 160, 171, 237, 311, 348, 377, 458
Sfr303I	CCGCGG	1 cut(s)	444
SgrBI	CCGCGG	1 cut(s)	444
SinI	GGWCC	2 cut(s)	99, 383
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	6 cut(s)	44, 68, 321, 441, 443, 449
SstI	GAGCTC	1 cut(s)	458
StyD4I	CCNGG	4 cut(s)	267, 367, 379, 430
TaaI	ACNGT	2 cut(s)	60, 358
TaiI	ACGT	2 cut(s)	171, 377
TaqI	TCGA	1 cut(s)	117
TasI	AATT	1 cut(s)	199
TauI	GCSGC	4 cut(s)	47, 71, 324, 451
TscAI	CASTG	4 cut(s)	65, 78, 295, 332
TseFI	GTSAC	2 cut(s)	375, 436
TseI	GCWGC	1 cut(s)	228
Tsp45I	GTSAC	2 cut(s)	375, 436
TspDTI	ATGAA	1 cut(s)	450
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	4 cut(s)	65, 78, 295, 332
Van91I	CCANNNNNTGG	1 cut(s)	88
VpaK11BI	GGWCC	2 cut(s)	99, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.