Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001282

Physical Location & Seq

Genomic Coordinates Forward (+)

20956975 .. 20958141

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G246300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCAAAGAACTCAAACACGGCGTTTTTTGTAGCCATGGCGGCTCTGGCTTTGGTAATGAACTCGGTGGGGGCAGCAAATACTTATGAAGTGGGTGATGCGTTCGGTTGGGTCGTCGCTCCCTCTGTAACTTACTCTACCTGGGCTTCAAACAAGACCTTCACTGTTGGCGACGTTCTTGTGTTCAAATTTAGCACCGGAAATCATGACGTAGCTAAAGTGACAAAGGCAAATTATGATTCTTGCAGTGCCACGAGCCCCATTTCATTGGAGACTAAAGGCCCTGCAAATCTCACACTGAGCACTTCAGGGGAGCATTATTACATTTGTACCTTTGGTGGCCATTGTGCTGGTGGTCAAAAGTTGAGCATCAATGTCACCGGAACTTCATCTCCAGCGCCAGCTCCTGCACCAAGTACTAGCTCTCCTCCTCCTTCACCTTCACCTTCACCACCGACCGCTGTTCCGGCACCCGCTCCCAGTACTAGTTCTCCTCCTCCACCCCCGTCCACTGTTCCTGCACCGGGTCCGAGTACTAGCACTACCCCTGGCAGCGGCGCCAGCCCTCCATCTGGCAACCCCAGCAGCCCAACCACTCCATCATCACCAACACCAGAAGGTTCGGCTAGCCCTCCACCACCACCGCCAAGTGCAGCAACATCTCTTAGGGTTGCTGGCCTATCTGCGACCTTCCTTTCCATTGCTTTGGCTTTGTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

241

Amino Acids

23.69

Weight (kDa)

6.8

Isoelectric Point (pI)

70.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20230
fragaria_vesca	FvH4_6g29770 FvH4_6g29800 FvH4_6g29800
malus_domestica	MD17G1210900.v1.1 MD17G1211000.v1.1 MD17G1211100.v1.1 MD17G1211200.v1.1 MD17G1211300.v1.1
prunus_persica	Prupe.3G086400_v2.0.a1 Prupe.3G086500_v2.0.a1 Prupe.3G112300_v2.0.a1 Prupe.7G246300_v2.0.a1
pyrus_communis	pycom17g21600 pycom17g21610
rosa_chinensis	RchiOBHm_Chr2g0135581 RchiOBHm_Chr2g0135591 RchiOBHm_Chr2g0135601
rosa_laevigata	RLG00000019415 RLG00000019417 RLG00000019468 RLG00000019470 RLG00000019471 RLG00000019472
rosa_multiflora	Rmu_sc0002398.1_g000005 Rmu_sc0002398.1_g000011 Rmu_sc0002792.1_g000051 Rmu_sc0006464.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109040 Rroxscaffold_2G00109060 Rroxscaffold_2G00109140 Rroxscaffold_2G00109150 Rroxscaffold_2G00109160 Rroxscaffold_4G00301440
rosa_rugosa	Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325600 Rorug02G0325800
rosa_samantha	Rh1BG222100 Rh1BG222500 Rh1DG248800 Rh1DG249300 Rh2AG376500 Rh2BG382500 Rh2BG382700 Rh2BG382900 Rh2CG361400 Rh2CG361600 Rh2CG361800 Rh2CG362200
rosa_wichuraiana	Rw0G018650 Rw0G018660 Rw2G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	469, 557
AccBSI	CCGCTC	1 cut(s)	476
AciI	CCGC	5 cut(s)	41, 459, 474, 555, 644
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	291
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	4 cut(s)	331, 418, 484, 535
AfiI	CCNNNNNNNGG	3 cut(s)	524, 554, 572
AgsI	TTSAA	2 cut(s)	150, 187
AhlI	ACTAGT	1 cut(s)	485
AjnI	CCWGG	2 cut(s)	140, 547
AloI	GAACNNNNNNTCC	2 cut(s)	376, 408
AluBI	AGCT	3 cut(s)	215, 404, 423
AluI	AGCT	3 cut(s)	215, 404, 423
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	266
AlwNI	CAGNNNCTG	1 cut(s)	407
AoxI	GGCC	3 cut(s)	280, 340, 676
ApeKI	GCWGC	4 cut(s)	74, 552, 585, 653
ApoI	RAATTY	1 cut(s)	188
AspLEI	GCGC	2 cut(s)	400, 560
AspS9I	GGNCC	2 cut(s)	281, 527
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	6 cut(s)	107, 370, 429, 435, 441, 597
AsuNHI	GCTAGC	1 cut(s)	626
AvaII	GGWCC	1 cut(s)	527
BaeI	ACNNNNGTAYC	2 cut(s)	313, 346
BalI	TGGCCA	1 cut(s)	342
BanI	GGYRCC	2 cut(s)	469, 557
BanII	GRGCYC	1 cut(s)	260
BauI	CACGAG	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	86, 564, 597, 665
BccI	CCATC	2 cut(s)	577, 607
BceAI	ACGGC	1 cut(s)	36
BciT130I	CCWGG	2 cut(s)	142, 549
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	266
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	4 cut(s)	420, 486, 537, 627
BfoI	RGCGCY	2 cut(s)	401, 561
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	6 cut(s)	42, 75, 553, 556, 586, 654
BlsI	GCNGC	6 cut(s)	43, 76, 554, 557, 587, 655
BmcAI	AGTACT	3 cut(s)	418, 484, 535
Bme1390I	CCNGG	3 cut(s)	142, 525, 549
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	2 cut(s)	281, 527
BmiI	GGNNCC	3 cut(s)	471, 528, 559
BmrFI	CCNGG	3 cut(s)	142, 525, 549
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	2 cut(s)	88, 378
BmtI	GCTAGC	1 cut(s)	630
BmuI	ACTGGG	1 cut(s)	474
BpmI	CTGGAG	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	525
BsaHI	GRCGYC	1 cut(s)	558
BsaJI	CCNNGG	3 cut(s)	36, 141, 547
BsaWI	WCCGGW	2 cut(s)	197, 380
BsaXI	ACNNNNNCTCC	6 cut(s)	376, 406, 409, 439, 475, 505
Bsc4I	CCNNNNNNNGG	3 cut(s)	524, 554, 572
Bse1I	ACTGG	1 cut(s)	480
Bse3DI	GCAATG	1 cut(s)	699
BseBI	CCWGG	2 cut(s)	142, 549
BseDI	CCNNGG	3 cut(s)	36, 141, 547
BseLI	CCNNNNNNNGG	3 cut(s)	524, 554, 572
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	4 cut(s)	417, 420, 483, 486
BseXI	GCAGC	4 cut(s)	86, 564, 597, 665
BseYI	CCCAGC	1 cut(s)	581
BsgI	GTGCAG	3 cut(s)	393, 504, 672
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	3 cut(s)	282, 342, 678
BshNI	GGYRCC	2 cut(s)	469, 557
BsiEI	CGRYCG	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	305
BsiSI	CCGG	4 cut(s)	198, 381, 467, 524
BslI	CCNNNNNNNGG	3 cut(s)	524, 554, 572
BsmAI	GTCTC	1 cut(s)	266
BsnI	GGCC	3 cut(s)	282, 342, 678
Bsp1286I	GDGCHC	2 cut(s)	260, 305
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	5 cut(s)	41, 459, 474, 555, 644
BspANI	GGCC	3 cut(s)	282, 342, 678
BspCNI	CTCAG	1 cut(s)	291
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	3 cut(s)	471, 528, 559
BspOI	GCTAGC	1 cut(s)	630
BspT107I	GGYRCC	2 cut(s)	469, 557
BsrBI	CCGCTC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	480
BssECI	CCNNGG	3 cut(s)	36, 141, 547
BssNI	GRCGYC	1 cut(s)	558
BssSI	CACGAG	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	253
Bst2UI	CCWGG	2 cut(s)	142, 549
Bst4CI	ACNGT	2 cut(s)	166, 514
BstACI	GRCGYC	1 cut(s)	558
BstC8I	GCNNGC	4 cut(s)	402, 562, 628, 676
BstDEI	CTNAG	2 cut(s)	299, 665
BstDSI	CCRYGG	1 cut(s)	36
BstH2I	RGCGCY	2 cut(s)	401, 561
BstHHI	GCGC	2 cut(s)	400, 560
BstMAI	GTCTC	1 cut(s)	266
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 47, 467, 561, 582
BstNI	CCWGG	2 cut(s)	142, 549
BstSCI	CCNGG	3 cut(s)	140, 523, 547
BstV1I	GCAGC	4 cut(s)	86, 564, 597, 665
BstXI	CCANNNNNNTGG	3 cut(s)	268, 350, 706
BsuRI	GGCC	3 cut(s)	282, 342, 678
BtgI	CCRYGG	1 cut(s)	36
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	4 cut(s)	162, 253, 296, 510
Cac8I	GCNNGC	4 cut(s)	402, 562, 628, 676
CaiI	CAGNNNCTG	1 cut(s)	407
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	2 cut(s)	400, 560
Cfr13I	GGNCC	2 cut(s)	281, 527
Csp6I	GTAC	4 cut(s)	330, 417, 483, 534
CviAII	CATG	2 cut(s)	37, 206
CviQI	GTAC	4 cut(s)	330, 417, 483, 534
DdeI	CTNAG	2 cut(s)	299, 665
DinI	GGCGCC	1 cut(s)	559
EaeI	YGGCCR	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	140, 547
EcoT14I	CCWWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	260
EgeI	GGCGCC	1 cut(s)	559
EheI	GGCGCC	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	2 cut(s)	40, 209
FaiI	YATR	4 cut(s)	38, 87, 207, 237
FatI	CATG	2 cut(s)	36, 205
FauI	CCCGC	1 cut(s)	481
Fnu4HI	GCNGC	6 cut(s)	42, 75, 553, 556, 586, 654
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	6 cut(s)	42, 75, 553, 556, 586, 654
FspBI	CTAG	4 cut(s)	420, 486, 537, 627
GlaI	GCGC	2 cut(s)	399, 559
GluI	GCNGC	6 cut(s)	42, 75, 553, 556, 586, 654
GsaI	CCCAGC	1 cut(s)	585
GsuI	CTGGAG	1 cut(s)	378
HaeII	RGCGCY	2 cut(s)	401, 561
HaeIII	GGCC	3 cut(s)	282, 342, 678
HapII	CCGG	4 cut(s)	198, 381, 467, 524
HhaI	GCGC	2 cut(s)	400, 560
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	2 cut(s)	40, 209
Hin6I	GCGC	2 cut(s)	398, 558
HinP1I	GCGC	2 cut(s)	398, 558
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	4 cut(s)	198, 381, 467, 524
HphI	GGTGA	6 cut(s)	107, 370, 429, 435, 441, 597
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	1 cut(s)	531
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	1 cut(s)	510
Hpy99I	CGWCG	2 cut(s)	119, 176
HpyAV	CCTTC	6 cut(s)	169, 444, 450, 456, 611, 700
HpyCH4III	ACNGT	2 cut(s)	166, 514
HpyCH4IV	ACGT	2 cut(s)	174, 210
HpyCH4V	TGCA	5 cut(s)	246, 287, 410, 521, 653
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 47, 467, 561, 582
HpyF3I	CTNAG	2 cut(s)	299, 665
HpySE526I	ACGT	2 cut(s)	174, 210
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	2 cut(s)	40, 209
HspAI	GCGC	2 cut(s)	398, 558
KasI	GGCGCC	1 cut(s)	557
LmnI	GCTCC	4 cut(s)	124, 313, 409, 481
Lsp1109I	GCAGC	4 cut(s)	86, 564, 597, 665
LweI	GCATC	2 cut(s)	88, 378
MaeI	CTAG	4 cut(s)	420, 486, 537, 627
MaeII	ACGT	2 cut(s)	174, 210
MaeIII	GTNAC	3 cut(s)	127, 220, 376
MbiI	CCGCTC	1 cut(s)	476
MhlI	GDGCHC	2 cut(s)	260, 305
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	2 cut(s)	188, 232
MluNI	TGGCCA	1 cut(s)	342
Mly113I	GGCGCC	1 cut(s)	558
MnlI	CCTC	7 cut(s)	133, 438, 441, 504, 507, 576, 642
Mox20I	TGGCCA	1 cut(s)	342
MscI	TGGCCA	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	342
MspA1I	CMGCKG	2 cut(s)	461, 555
MspI	CCGG	4 cut(s)	198, 381, 467, 524
MspR9I	CCNGG	3 cut(s)	142, 525, 549
MvaI	CCWGG	2 cut(s)	142, 549
MwoI	GCNNNNNNNGC	5 cut(s)	41, 47, 467, 561, 582
NarI	GGCGCC	1 cut(s)	558
NciI	CCSGG	1 cut(s)	525
NcoI	CCATGG	1 cut(s)	36
NheI	GCTAGC	1 cut(s)	626
NlaIII	CATG	2 cut(s)	40, 209
NlaIV	GGNNCC	3 cut(s)	471, 528, 559
NmuCI	GTSAC	2 cut(s)	220, 376
PagI	TCATGA	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	6 cut(s)	43, 76, 554, 557, 587, 655
PluTI	GGCGCC	1 cut(s)	561
Psp6I	CCWGG	2 cut(s)	140, 547
PspFI	CCCAGC	1 cut(s)	581
PspGI	CCWGG	2 cut(s)	140, 547
PspN4I	GGNNCC	3 cut(s)	471, 528, 559
PspPI	GGNCC	2 cut(s)	281, 527
PstNI	CAGNNNCTG	1 cut(s)	407
RsaI	GTAC	4 cut(s)	331, 418, 484, 535
RsaNI	GTAC	4 cut(s)	330, 417, 483, 534
SatI	GCNGC	6 cut(s)	42, 75, 553, 556, 586, 654
Sau96I	GGNCC	2 cut(s)	281, 527
ScaI	AGTACT	3 cut(s)	418, 484, 535
ScrFI	CCNGG	3 cut(s)	142, 525, 549
SduI	GDGCHC	2 cut(s)	260, 305
SfaNI	GCATC	2 cut(s)	88, 378
SfoI	GGCGCC	1 cut(s)	559
SinI	GGWCC	1 cut(s)	527
SpeI	ACTAGT	1 cut(s)	485
Sse9I	AATT	2 cut(s)	188, 232
SsiI	CCGC	5 cut(s)	41, 459, 474, 555, 644
SspDI	GGCGCC	1 cut(s)	557
SspMI	CTAG	4 cut(s)	420, 486, 537, 627
StyD4I	CCNGG	3 cut(s)	140, 523, 547
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	166, 514
TaiI	ACGT	2 cut(s)	177, 213
TasI	AATT	2 cut(s)	188, 232
TatI	WGTACW	3 cut(s)	416, 482, 533
TauI	GCSGC	2 cut(s)	44, 558
TfiI	GAWTC	1 cut(s)	239
TscAI	CASTG	4 cut(s)	169, 253, 303, 517
TseFI	GTSAC	2 cut(s)	220, 376
TseI	GCWGC	4 cut(s)	74, 552, 585, 653
Tsp45I	GTSAC	2 cut(s)	220, 376
TspDTI	ATGAA	4 cut(s)	74, 102, 255, 378
TspRI	CASTG	4 cut(s)	169, 253, 303, 517
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	2 cut(s)	43, 350
XspI	CTAG	4 cut(s)	420, 486, 537, 627
ZrmI	AGTACT	3 cut(s)	418, 484, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.