Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001282

Physical Location & Seq

Genomic Coordinates Reverse (-)

48936429 .. 48946545

Gene Structure 10117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG361400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGACACATATCTTCTACCACCTGGTGAAGATCCAGAATCTTGCCAAACATATCTTCGGATGTGGGATAAAGATGGGAAATATAGTCTCATGTTTGAGCTTTCAACTTTGCCACAAACACGCACGATGTTGTAGAAGTGCCCAAGCATCATTCGACTCATGCAGCTCCTCCAACCCAATCGGCAGCACCATCACCACTAGTCCAGCCAACGTTACTCTCACGTCTGCCGGCGACCACTACTATATCTGCACTTTCAGCCGCCATTGCCAGTCCGGACAAAATCTCACCATTACCGTCTCAGCATCCGCTACATCACCTGGAGCCTCCCCTTCTGCACCAACTCCCATATCCCCAATGCCACCAACTACCACTACTGCTCCTACCACGCCTTCACCCACATCTAACGCCCCTTGCCCTCCGGTCCAAGCACCATCTCCGTCCACCAAGATCACGGGGTCCACAACTAGCACCACGCCGGGATCCACCGCGTTGCCCCCAAGATCTTCTTCCCCTAACGTTGGGGCTGGTTTGGTTTTGAGCTTGTTGTCCCTTGTAATGGGACTTTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

190

Amino Acids

19.54

Weight (kDa)

9.11

Isoelectric Point (pI)

75.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	32 - 93	1.7e-08	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20230
fragaria_vesca	FvH4_6g29770 FvH4_6g29800 FvH4_6g29800
malus_domestica	MD17G1210900.v1.1 MD17G1211000.v1.1 MD17G1211100.v1.1 MD17G1211200.v1.1 MD17G1211300.v1.1
prunus_persica	Prupe.3G086400_v2.0.a1 Prupe.3G086500_v2.0.a1 Prupe.3G112300_v2.0.a1 Prupe.7G246300_v2.0.a1
pyrus_communis	pycom17g21600 pycom17g21610
rosa_chinensis	RchiOBHm_Chr2g0135581 RchiOBHm_Chr2g0135591 RchiOBHm_Chr2g0135601
rosa_laevigata	RLG00000019415 RLG00000019417 RLG00000019468 RLG00000019470 RLG00000019471 RLG00000019472
rosa_multiflora	Rmu_sc0002398.1_g000005 Rmu_sc0002398.1_g000011 Rmu_sc0002792.1_g000051 Rmu_sc0006464.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109040 Rroxscaffold_2G00109060 Rroxscaffold_2G00109140 Rroxscaffold_2G00109150 Rroxscaffold_2G00109160 Rroxscaffold_4G00301440
rosa_rugosa	Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325600 Rorug02G0325800
rosa_samantha	Rh1BG222100 Rh1BG222500 Rh1DG248800 Rh1DG249300 Rh2AG376500 Rh2BG382500 Rh2BG382700 Rh2BG382900 Rh2CG361400 Rh2CG361600 Rh2CG361800 Rh2CG362200
rosa_wichuraiana	Rw0G018650 Rw0G018660 Rw2G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	488
AccIII	TCCGGA	1 cut(s)	272
AciI	CCGC	3 cut(s)	259, 306, 486
AclI	AACGTT	2 cut(s)	210, 516
AclWI	GGATC	3 cut(s)	25, 474, 487
AdeI	CACNNNGTG	1 cut(s)	25
AfiI	CCNNNNNNNGG	2 cut(s)	518, 556
AgsI	TTSAA	1 cut(s)	104
AhlI	ACTAGT	1 cut(s)	197
AjiI	CACGTC	1 cut(s)	222
AjnI	CCWGG	2 cut(s)	21, 316
AjuI	GAANNNNNNNTTGG	4 cut(s)	38, 70, 490, 522
AluBI	AGCT	3 cut(s)	99, 165, 540
AluI	AGCT	3 cut(s)	99, 165, 540
Alw26I	GTCTC	2 cut(s)	91, 301
AlwI	GGATC	3 cut(s)	25, 474, 487
Aor13HI	TCCGGA	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	162, 183
AspS9I	GGNCC	2 cut(s)	421, 456
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	5 cut(s)	37, 184, 277, 306, 384
AvaII	GGWCC	2 cut(s)	421, 456
BaeGI	GKGCMC	1 cut(s)	142
BamHI	GGATCC	1 cut(s)	479
BbvI	GCAGC	2 cut(s)	174, 195
BccI	CCATC	3 cut(s)	67, 197, 439
BciT130I	CCWGG	2 cut(s)	23, 318
BcnI	CCSGG	1 cut(s)	477
BcoDI	GTCTC	2 cut(s)	91, 301
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	2 cut(s)	198, 465
BglII	AGATCT	1 cut(s)	500
BisI	GCNGC	3 cut(s)	163, 184, 259
BlsI	GCNGC	3 cut(s)	164, 185, 260
Bme1390I	CCNGG	3 cut(s)	23, 318, 477
Bme18I	GGWCC	2 cut(s)	421, 456
BmgBI	CACGTC	1 cut(s)	222
BmgT120I	GGNCC	2 cut(s)	421, 456
BmiI	GGNNCC	3 cut(s)	322, 457, 481
BmrFI	CCNGG	3 cut(s)	23, 318, 477
BmsI	GCATC	2 cut(s)	155, 311
BpmI	CTGGAG	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	477
BsaWI	WCCGGW	2 cut(s)	272, 418
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 556
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	262
BseAI	TCCGGA	1 cut(s)	272
BseBI	CCWGG	2 cut(s)	23, 318
BseGI	GGATG	2 cut(s)	65, 302
BseLI	CCNNNNNNNGG	2 cut(s)	518, 556
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	174, 195
BsgI	GTGCAG	2 cut(s)	232, 318
Bsh1236I	CGCG	1 cut(s)	488
BsiSI	CCGG	4 cut(s)	228, 273, 419, 476
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	2 cut(s)	518, 556
BsmAI	GTCTC	2 cut(s)	91, 301
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp13I	TCCGGA	1 cut(s)	272
Bsp143I	GATC	4 cut(s)	30, 447, 479, 500
BspACI	CCGC	3 cut(s)	259, 306, 486
BspCNI	CTCAG	1 cut(s)	311
BspEI	TCCGGA	1 cut(s)	272
BspFNI	CGCG	1 cut(s)	488
BspLI	GGNNCC	3 cut(s)	322, 457, 481
BspPI	GGATC	3 cut(s)	25, 474, 487
BsrDI	GCAATG	1 cut(s)	262
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	227
BssMI	GATC	4 cut(s)	30, 447, 479, 500
Bst2UI	CCWGG	2 cut(s)	23, 318
Bst4CI	ACNGT	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	298
BstF5I	GGATG	2 cut(s)	65, 302
BstFNI	CGCG	1 cut(s)	488
BstKTI	GATC	4 cut(s)	33, 450, 482, 503
BstMAI	GTCTC	2 cut(s)	91, 301
BstMBI	GATC	4 cut(s)	30, 447, 479, 500
BstMWI	GCNNNNNNNGC	2 cut(s)	255, 264
BstNI	CCWGG	2 cut(s)	23, 318
BstSCI	CCNGG	3 cut(s)	21, 316, 475
BstSLI	GKGCMC	1 cut(s)	142
BstUI	CGCG	1 cut(s)	488
BstV1I	GCAGC	2 cut(s)	174, 195
BstX2I	RGATCY	3 cut(s)	30, 479, 500
BstYI	RGATCY	3 cut(s)	30, 479, 500
BtrI	CACGTC	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	65, 302
Cac8I	GCNNGC	1 cut(s)	229
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	2 cut(s)	421, 456
CsiI	ACCWGGT	1 cut(s)	21
CviAII	CATG	2 cut(s)	90, 159
CviJI	RGCY	7 cut(s)	99, 165, 206, 258, 323, 524, 540
CviKI_1	RGCY	7 cut(s)	99, 165, 206, 258, 323, 524, 540
DdeI	CTNAG	1 cut(s)	298
DpnI	GATC	4 cut(s)	32, 449, 481, 502
DpnII	GATC	4 cut(s)	30, 447, 479, 500
DraIII	CACNNNGTG	1 cut(s)	25
Eco47I	GGWCC	2 cut(s)	421, 456
EcoRII	CCWGG	2 cut(s)	21, 316
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	2 cut(s)	93, 162
FaiI	YATR	7 cut(s)	9, 51, 83, 91, 160, 243, 347
FalI	AAGNNNNNCTT	2 cut(s)	490, 522
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	2 cut(s)	89, 158
Fnu4HI	GCNGC	3 cut(s)	163, 184, 259
FokI	GGATG	2 cut(s)	72, 289
Fsp4HI	GCNGC	3 cut(s)	163, 184, 259
FspBI	CTAG	2 cut(s)	198, 465
GluI	GCNGC	3 cut(s)	163, 184, 259
GsuI	CTGGAG	1 cut(s)	339
HapII	CCGG	4 cut(s)	228, 273, 419, 476
Hin1II	CATG	2 cut(s)	93, 162
HinfI	GANTC	2 cut(s)	37, 155
HpaII	CCGG	4 cut(s)	228, 273, 419, 476
HphI	GGTGA	5 cut(s)	37, 184, 277, 306, 384
Hpy166II	GTNNAC	2 cut(s)	441, 459
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	2 cut(s)	34, 273
Hpy8I	GTNNAC	2 cut(s)	441, 459
HpyAV	CCTTC	2 cut(s)	339, 399
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	3 cut(s)	210, 221, 516
HpyCH4V	TGCA	3 cut(s)	162, 249, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	255, 264
HpyF3I	CTNAG	1 cut(s)	298
HpySE526I	ACGT	3 cut(s)	210, 221, 516
Hsp92II	CATG	2 cut(s)	93, 162
Kpn2I	TCCGGA	1 cut(s)	272
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	30, 447, 479, 500
LmnI	GCTCC	3 cut(s)	170, 320, 382
Lsp1109I	GCAGC	2 cut(s)	174, 195
LweI	GCATC	2 cut(s)	155, 311
MabI	ACCWGGT	1 cut(s)	21
MaeI	CTAG	2 cut(s)	198, 465
MaeII	ACGT	3 cut(s)	210, 221, 516
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	4 cut(s)	32, 449, 481, 502
MboI	GATC	4 cut(s)	30, 447, 479, 500
MboII	GAAGA	5 cut(s)	4, 40, 46, 495, 498
MflI	RGATCY	3 cut(s)	30, 479, 500
MhlI	GDGCHC	1 cut(s)	142
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	3 cut(s)	178, 334, 426
MroI	TCCGGA	1 cut(s)	272
MroNI	GCCGGC	1 cut(s)	227
MspI	CCGG	4 cut(s)	228, 273, 419, 476
MspR9I	CCNGG	3 cut(s)	23, 318, 477
MvaI	CCWGG	2 cut(s)	23, 318
MvnI	CGCG	1 cut(s)	488
MwoI	GCNNNNNNNGC	2 cut(s)	255, 264
NaeI	GCCGGC	1 cut(s)	229
NciI	CCSGG	1 cut(s)	477
NdeII	GATC	4 cut(s)	30, 447, 479, 500
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	2 cut(s)	93, 162
NlaIV	GGNNCC	3 cut(s)	322, 457, 481
PdiI	GCCGGC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	3 cut(s)	164, 185, 260
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Psp1406I	AACGTT	2 cut(s)	210, 516
Psp6I	CCWGG	2 cut(s)	21, 316
PspGI	CCWGG	2 cut(s)	21, 316
PspN4I	GGNNCC	3 cut(s)	322, 457, 481
PspPI	GGNCC	2 cut(s)	421, 456
PsuI	RGATCY	3 cut(s)	30, 479, 500
SatI	GCNGC	3 cut(s)	163, 184, 259
Sau3AI	GATC	4 cut(s)	30, 447, 479, 500
Sau96I	GGNCC	2 cut(s)	421, 456
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	23, 318, 477
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	8 cut(s)	24, 101, 167, 213, 224, 319, 519, 542
SexAI	ACCWGGT	1 cut(s)	21
SfaNI	GCATC	2 cut(s)	155, 311
SinI	GGWCC	2 cut(s)	421, 456
SpeI	ACTAGT	1 cut(s)	197
SsiI	CCGC	3 cut(s)	259, 306, 486
SspMI	CTAG	2 cut(s)	198, 465
StyD4I	CCNGG	3 cut(s)	21, 316, 475
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	3 cut(s)	213, 224, 519
TaqI	TCGA	1 cut(s)	153
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	162, 183
TspGWI	ACGGA	1 cut(s)	426
VpaK11BI	GGWCC	2 cut(s)	421, 456
XspI	CTAG	2 cut(s)	198, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.