Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001282

Physical Location & Seq

Genomic Coordinates Forward (+)

19978774 .. 19979788

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g21600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAGAGCAAGATGGTGATTGTTTTCTGTGTAGTTGTGGCTGTGTTCCTGCAAAATGTTGCAGCACAGACGGGACATGTGGTGGGAGGAAGCATAGGTTGGACCATCCCTCAATCTGGTGCACAAGAGTATGTCACTTGGGCTGCAAGTAACAAGTTCGTTGTTAGTGATACTCTCACTTTCAACTTCGCCACCAACGCACACGATGTACAAGAAGTACCCAAAGCATCATTCGACTCATGCAGTTCGGAAAACCCAATTGGCACGGCTATCACAACTGGCCCAGCAAACATCACTCTCACCTCTTCAGGCGACCACTACTACATCTGCACTTATAGCCGTCATTGCCAGTCGGGCCAGAAACTAGCCATCACCGTCTCAGCTGCCTCCCCAGGTGCCGCACCTTCTGTACCACCACCACCCTCTACCACTAACACCCCTCCAACTACCCCTTCCCCTACATCAAATGACCCTGCCGCTTGCGCACCAGTCCCAGCTTCATCACCATCCATGAATGGGGGAGTACCCACCGTGAACAACACCCCGGGGTCGCCGCCTCCGCTGGGCTCTTCTTCACCTGCTGTTTTGGCTAGTTTTTCTTTGTCGGCTGCTGCTCTTATCGTGGGTTTGCTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

213

Amino Acids

21.43

Weight (kDa)

5.32

Isoelectric Point (pI)

60.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20230
fragaria_vesca	FvH4_6g29770 FvH4_6g29800 FvH4_6g29800
malus_domestica	MD17G1210900.v1.1 MD17G1211000.v1.1 MD17G1211100.v1.1 MD17G1211200.v1.1 MD17G1211300.v1.1
prunus_persica	Prupe.3G086400_v2.0.a1 Prupe.3G086500_v2.0.a1 Prupe.3G112300_v2.0.a1 Prupe.7G246300_v2.0.a1
pyrus_communis	pycom17g21600 pycom17g21610
rosa_chinensis	RchiOBHm_Chr2g0135581 RchiOBHm_Chr2g0135591 RchiOBHm_Chr2g0135601
rosa_laevigata	RLG00000019415 RLG00000019417 RLG00000019468 RLG00000019470 RLG00000019471 RLG00000019472
rosa_multiflora	Rmu_sc0002398.1_g000005 Rmu_sc0002398.1_g000011 Rmu_sc0002792.1_g000051 Rmu_sc0006464.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109040 Rroxscaffold_2G00109060 Rroxscaffold_2G00109140 Rroxscaffold_2G00109150 Rroxscaffold_2G00109160 Rroxscaffold_4G00301440
rosa_rugosa	Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325600 Rorug02G0325800
rosa_samantha	Rh1BG222100 Rh1BG222500 Rh1DG248800 Rh1DG249300 Rh2AG376500 Rh2BG382500 Rh2BG382700 Rh2BG382900 Rh2CG361400 Rh2CG361600 Rh2CG361800 Rh2CG362200
rosa_wichuraiana	Rw0G018650 Rw0G018660 Rw2G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	586
Acc16I	TGCGCA	1 cut(s)	484
Acc36I	ACCTGC	1 cut(s)	586
AccB1I	GGYRCC	1 cut(s)	395
AciI	CCGC	4 cut(s)	399, 477, 554, 560
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	4 cut(s)	210, 219, 411, 525
AfiI	CCNNNNNNNGG	3 cut(s)	116, 516, 563
AflIII	ACRYGT	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	391
AjuI	GAANNNNNNNTTGG	8 cut(s)	82, 114, 215, 243, 247, 275, 436, 468
AluBI	AGCT	2 cut(s)	383, 497
AluI	AGCT	2 cut(s)	383, 497
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	382
Alw44I	GTGCAC	1 cut(s)	120
Ama87I	CYCGRG	1 cut(s)	544
AoxI	GGCC	2 cut(s)	280, 355
ApaLI	GTGCAC	1 cut(s)	120
ApeKI	GCWGC	5 cut(s)	62, 143, 383, 608, 611
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	3 cut(s)	102, 281, 355
AsuC2I	CCSGG	2 cut(s)	545, 546
AsuHPI	GGTGA	5 cut(s)	28, 292, 364, 495, 567
AvaI	CYCGRG	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	5 cut(s)	74, 130, 370, 595, 598
BccI	CCATC	4 cut(s)	7, 113, 377, 514
BceAI	ACGGC	2 cut(s)	282, 324
BciT130I	CCWGG	1 cut(s)	393
BcnI	CCSGG	2 cut(s)	545, 546
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	2 cut(s)	365, 591
BfuAI	ACCTGC	1 cut(s)	586
BglI	GCCNNNNNGGC	1 cut(s)	354
BisI	GCNGC	8 cut(s)	63, 144, 384, 399, 477, 554, 609, 612
BlsI	GCNGC	8 cut(s)	64, 145, 385, 400, 478, 555, 610, 613
Bme1390I	CCNGG	3 cut(s)	393, 545, 546
Bme18I	GGWCC	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	544
BmgT120I	GGNCC	3 cut(s)	102, 281, 355
BmiI	GGNNCC	1 cut(s)	397
BmrFI	CCNGG	3 cut(s)	393, 545, 546
BmsI	GCATC	1 cut(s)	236
BpuMI	CCSGG	2 cut(s)	545, 546
BsaJI	CCNNGG	4 cut(s)	391, 543, 544, 545
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 516, 563
Bse1I	ACTGG	3 cut(s)	283, 349, 488
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	4 cut(s)	391, 543, 544, 545
BseGI	GGATG	2 cut(s)	105, 506
BseLI	CCNNNNNNNGG	3 cut(s)	116, 516, 563
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	3 cut(s)	283, 349, 488
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	5 cut(s)	74, 130, 370, 595, 598
BseYI	CCCAGC	3 cut(s)	283, 493, 562
BsgI	GTGCAG	1 cut(s)	313
BshFI	GGCC	2 cut(s)	282, 357
BshNI	GGYRCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	544
BsiSI	CCGG	1 cut(s)	545
BslFI	GGGAC	2 cut(s)	87, 476
BslI	CCNNNNNNNGG	3 cut(s)	116, 516, 563
BsmAI	GTCTC	1 cut(s)	382
BsmBI	CGTCTC	1 cut(s)	382
BsmFI	GGGAC	2 cut(s)	87, 476
BsnI	GGCC	2 cut(s)	282, 357
BsoBI	CYCGRG	1 cut(s)	544
Bsp1286I	GDGCHC	2 cut(s)	124, 569
Bsp1407I	TGTACA	1 cut(s)	208
BspACI	CCGC	4 cut(s)	399, 477, 554, 560
BspANI	GGCC	2 cut(s)	282, 357
BspCNI	CTCAG	1 cut(s)	392
BspLI	GGNNCC	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	586
BspQI	GCTCTTC	1 cut(s)	574
BspT107I	GGYRCC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	343
BsrGI	TGTACA	1 cut(s)	208
BsrI	ACTGG	3 cut(s)	283, 349, 488
BssECI	CCNNGG	4 cut(s)	391, 543, 544, 545
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	2 cut(s)	376, 532
Bst6I	CTCTTC	2 cut(s)	310, 574
BstAUI	TGTACA	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	1 cut(s)	379
BstF5I	GGATG	2 cut(s)	105, 506
BstHHI	GCGC	1 cut(s)	485
BstMAI	GTCTC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	7 cut(s)	197, 336, 345, 354, 482, 559, 587
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	3 cut(s)	391, 543, 544
BstSLI	GKGCMC	1 cut(s)	124
BstV1I	GCAGC	5 cut(s)	74, 130, 370, 595, 598
BsuRI	GGCC	2 cut(s)	282, 357
BtsCI	GGATG	2 cut(s)	105, 506
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	1 cut(s)	481
CfoI	GCGC	1 cut(s)	485
Cfr13I	GGNCC	3 cut(s)	102, 281, 355
Cfr9I	CCCGGG	1 cut(s)	544
Csp6I	GTAC	4 cut(s)	209, 218, 410, 524
CviAII	CATG	3 cut(s)	77, 240, 511
CviQI	GTAC	4 cut(s)	209, 218, 410, 524
DdeI	CTNAG	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	310, 574
EarI	CTCTTC	2 cut(s)	310, 574
Eco24I	GRGCYC	1 cut(s)	569
Eco47I	GGWCC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	569
Esp3I	CGTCTC	1 cut(s)	382
FaeI	CATG	3 cut(s)	80, 243, 514
FaiI	YATR	6 cut(s)	78, 95, 132, 241, 336, 512
FaqI	GGGAC	2 cut(s)	87, 476
FatI	CATG	3 cut(s)	76, 239, 510
Fnu4HI	GCNGC	8 cut(s)	63, 144, 384, 399, 477, 554, 609, 612
FokI	GGATG	2 cut(s)	92, 493
FriOI	GRGCYC	1 cut(s)	569
Fsp4HI	GCNGC	8 cut(s)	63, 144, 384, 399, 477, 554, 609, 612
FspBI	CTAG	2 cut(s)	365, 591
FspI	TGCGCA	1 cut(s)	484
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	8 cut(s)	63, 144, 384, 399, 477, 554, 609, 612
GsaI	CCCAGC	3 cut(s)	287, 497, 566
HaeIII	GGCC	2 cut(s)	282, 357
HapII	CCGG	1 cut(s)	545
HhaI	GCGC	1 cut(s)	485
Hin1II	CATG	3 cut(s)	80, 243, 514
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	1 cut(s)	545
HphI	GGTGA	5 cut(s)	28, 292, 364, 495, 567
Hpy166II	GTNNAC	2 cut(s)	122, 535
Hpy188I	TCNGA	1 cut(s)	250
Hpy8I	GTNNAC	2 cut(s)	122, 535
HpyAV	CCTTC	2 cut(s)	414, 462
HpyCH4III	ACNGT	2 cut(s)	376, 532
HpyCH4V	TGCA	6 cut(s)	52, 62, 122, 146, 243, 330
HpyF10VI	GCNNNNNNNGC	7 cut(s)	197, 336, 345, 354, 482, 559, 587
HpyF3I	CTNAG	1 cut(s)	379
Hsp92II	CATG	3 cut(s)	80, 243, 514
HspAI	GCGC	1 cut(s)	483
LguI	GCTCTTC	1 cut(s)	574
Lsp1109I	GCAGC	5 cut(s)	74, 130, 370, 595, 598
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	2 cut(s)	365, 591
MaeIII	GTNAC	2 cut(s)	133, 149
MboII	GAAGA	3 cut(s)	297, 561, 564
MfeI	CAATTG	1 cut(s)	258
MhlI	GDGCHC	2 cut(s)	124, 569
MluCI	AATT	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	2 cut(s)	80, 467
MnlI	CCTC	7 cut(s)	80, 120, 313, 397, 433, 450, 567
MspA1I	CMGCKG	2 cut(s)	383, 562
MspI	CCGG	1 cut(s)	545
MspR9I	CCNGG	3 cut(s)	393, 545, 546
MunI	CAATTG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	7 cut(s)	197, 336, 345, 354, 482, 559, 587
NciI	CCSGG	2 cut(s)	545, 546
NlaIII	CATG	3 cut(s)	80, 243, 514
NlaIV	GGNNCC	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	133
NsbI	TGCGCA	1 cut(s)	484
NspI	RCATGY	1 cut(s)	80
PaqCI	CACCTGC	1 cut(s)	586
PciI	ACATGT	1 cut(s)	76
PciSI	GCTCTTC	1 cut(s)	574
PkrI	GCNGC	8 cut(s)	64, 145, 385, 400, 478, 555, 610, 613
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PscI	ACATGT	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	391
PspFI	CCCAGC	3 cut(s)	283, 493, 562
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	397
PspPI	GGNCC	3 cut(s)	102, 281, 355
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	4 cut(s)	210, 219, 411, 525
RsaNI	GTAC	4 cut(s)	209, 218, 410, 524
SapI	GCTCTTC	1 cut(s)	574
SatI	GCNGC	8 cut(s)	63, 144, 384, 399, 477, 554, 609, 612
Sau96I	GGNCC	3 cut(s)	102, 281, 355
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	3 cut(s)	393, 545, 546
SduI	GDGCHC	2 cut(s)	124, 569
SetI	ASST	7 cut(s)	100, 305, 385, 397, 406, 499, 580
SfaNI	GCATC	1 cut(s)	236
SinI	GGWCC	1 cut(s)	102
SmaI	CCCGGG	1 cut(s)	546
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	4 cut(s)	399, 477, 554, 560
SspMI	CTAG	2 cut(s)	365, 591
StyD4I	CCNGG	3 cut(s)	391, 543, 544
TaaI	ACNGT	2 cut(s)	376, 532
TaqI	TCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	258
TatI	WGTACW	1 cut(s)	208
TauI	GCSGC	3 cut(s)	401, 479, 556
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	5 cut(s)	62, 143, 383, 608, 611
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	489, 527
TspMI	CCCGGG	1 cut(s)	544
VneI	GTGCAC	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	102
XceI	RCATGY	1 cut(s)	80
XmaI	CCCGGG	1 cut(s)	544
XspI	CTAG	2 cut(s)	365, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.