Prupe.3G086400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001282
Physical Location & Seq
Forward (+)
6391773 .. 6392408
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G086400.1

Sequence Viewer

Length: 306 bp
ATGGAGAGGAAGATGGTGATTGTTTTTGGTTTAGTTGTATCAATGTTCTTGCAAAGTGTGGCAGCACAGAAAGTTCACGTGACCTCACCACCTTCTGTGCCTACTACACCTTCTCTGGAATCAAACGACCCTAATCCAGAACCAGCACCATCACCTTCCTCCACTCAGCCCACTGGGAAGACCACTCCCCCCACTCCCCCCACTGGGAAGACCGCTCCACAGCCCGCACCGGCTTCTTCATCCGGGGCTGTTTTCGCTAGTTTCTTTTTGTCGTCCTTGGCTCTTGTCATGGGTTTGTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.41

Weight (kDa)

8.21

Isoelectric Point (pI)

67.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 215
AciI CCGC 2 cut(s) 213, 225
AcvI CACGTG 1 cut(s) 79
AfiI CCNNNNNNNGG 2 cut(s) 203, 204
ApeKI GCWGC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 244
AsuHPI GGTGA 3 cut(s) 28, 78, 144
BbrPI CACGTG 1 cut(s) 79
BbsI GAAGAC 2 cut(s) 185, 215
BbvI GCAGC 1 cut(s) 74
BccI CCATC 2 cut(s) 7, 157
BcnI CCSGG 1 cut(s) 244
BfaI CTAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 244
BmrI ACTGGG 2 cut(s) 183, 213
BmuI ACTGGG 2 cut(s) 183, 213
BpiI GAAGAC 2 cut(s) 185, 215
BpuMI CCSGG 1 cut(s) 244
BsaAI YACGTR 1 cut(s) 79
BsaJI CCNNGG 2 cut(s) 243, 276
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 204
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 2 cut(s) 178, 208
BseDI CCNNGG 2 cut(s) 243, 276
BseGI GGATG 1 cut(s) 239
BseLI CCNNNNNNNGG 2 cut(s) 203, 204
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 2 cut(s) 178, 208
BseXI GCAGC 1 cut(s) 74
BsiSI CCGG 2 cut(s) 230, 243
BslI CCNNNNNNNGG 2 cut(s) 203, 204
BspACI CCGC 2 cut(s) 213, 225
BspCNI CTCAG 1 cut(s) 178
BsrBI CCGCTC 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 2 cut(s) 178, 208
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 243, 276
BssT1I CCWWGG 1 cut(s) 276
BstBAI YACGTR 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 239
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 242
BstV1I GCAGC 1 cut(s) 74
BstV2I GAAGAC 2 cut(s) 185, 215
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 2 cut(s) 171, 201
Cac8I GCNNGC 1 cut(s) 225
Cfr10I RCCGGY 1 cut(s) 229
CviAII CATG 1 cut(s) 289
CviJI RGCY 5 cut(s) 169, 223, 233, 248, 281
CviKI_1 RGCY 5 cut(s) 169, 223, 233, 248, 281
DdeI CTNAG 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 276
Eco72I CACGTG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 1 cut(s) 292
FaiI YATR 1 cut(s) 290
FatI CATG 1 cut(s) 288
FauI CCCGC 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 1 cut(s) 226
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 258
GluI GCNGC 1 cut(s) 63
HapII CCGG 2 cut(s) 230, 243
Hin1II CATG 1 cut(s) 292
HinfI GANTC 1 cut(s) 119
HpaII CCGG 2 cut(s) 230, 243
HphI GGTGA 3 cut(s) 28, 78, 144
Hpy166II GTNNAC 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 116, 137
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 3 cut(s) 102, 120, 165
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 1 cut(s) 292
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 7 cut(s) 101, 150, 156, 159, 189, 243, 256
Lsp1109I GCAGC 1 cut(s) 74
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 79
MbiI CCGCTC 1 cut(s) 215
MboII GAAGA 4 cut(s) 22, 190, 220, 228
MnlI CCTC 2 cut(s) 94, 169
MspI CCGG 2 cut(s) 230, 243
MspR9I CCNGG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 254
NciI CCSGG 1 cut(s) 244
NlaIII CATG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 64
PmaCI CACGTG 1 cut(s) 79
PmlI CACGTG 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 79
PspCI CACGTG 1 cut(s) 79
SatI GCNGC 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 244
SetI ASST 5 cut(s) 81, 86, 94, 112, 157
SsiI CCGC 2 cut(s) 213, 225
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 276
TaiI ACGT 1 cut(s) 81
TfiI GAWTC 1 cut(s) 119
TscAI CASTG 2 cut(s) 178, 208
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 228
TspRI CASTG 2 cut(s) 178, 208
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.