Rh2CG361600

Cucumber peeling cupredoxin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001282
Physical Location & Seq
Reverse (-)
48954769 .. 48956113
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG361600.1

Sequence Viewer

Length: 552 bp
ATGGAGAGCCAGAAGAAGATGATGGTTGTTTTTGGGTTAGTTGCGGCTGTGTTTTTACAGTGTGTGGCGGCACAGACGACCCATGTGGTGGGAGGTAGCGTAGGCTGGACCATACCACAGACCGGTGCACAAGAGTATGTCACATGGGCGTCTGGTCAGAAGTTCGTAGTTCGTGATGTTCTGGTTTTCAACTTCGTGACAAACTCACACGACGTTCTGGAAGTACCCAAAGCATCGTTCGACTCTTGCAGCTCCACCAACCCAATCGGCAATAACATCACCACCGGCCCGGCCAACATCACTCTCACCTCCGCCGGCGAACACTACTACATCTGCACTTTCGGTAGCCACTGCCAGTCCGGCCAGAAGCTCGCCATCACCGTCTCAGCATCAGCCACGTCACCCGGAGGCTCTCCTTCTGCACCATCTCCATCTACCACAGCTAACAACACGCCGGGGGTGACCGCGGCGCCGCCGAGCTCTTCATCCCCTGCTGTTGGGGCTGGTTTCGTTTTGTGCTCGTTGTCCCTTGTAATGGGATTGTTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

183

Amino Acids

18.75

Weight (kDa)

6.38

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 36 - 122 7.7e-24 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 469
AccB7I CCANNNNNTGG 1 cut(s) 88
AccII CGCG 1 cut(s) 467
AciI CCGC 6 cut(s) 44, 68, 312, 465, 467, 473
AcoI YGGCCR 2 cut(s) 291, 361
AcyI GRCGYC 2 cut(s) 149, 470
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 4 cut(s) 88, 122, 497, 535
AgeI ACCGGT 1 cut(s) 122
AgsI TTSAA 1 cut(s) 190
AjiI CACGTC 1 cut(s) 399
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 4 cut(s) 252, 370, 443, 480
AluI AGCT 4 cut(s) 252, 370, 443, 480
Alw21I GWGCWC 3 cut(s) 130, 482, 521
Alw26I GTCTC 1 cut(s) 388
Alw44I GTGCAC 1 cut(s) 126
AoxI GGCC 3 cut(s) 286, 291, 361
ApaLI GTGCAC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 249
AsiGI ACCGGT 1 cut(s) 122
AspLEI GCGC 1 cut(s) 472
AspS9I GGNCC 2 cut(s) 108, 287
AsuC2I CCSGG 3 cut(s) 290, 405, 456
AsuHPI GGTGA 5 cut(s) 271, 298, 370, 393, 472
AvaII GGWCC 1 cut(s) 108
BaeGI GKGCMC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 469
BanII GRGCYC 1 cut(s) 482
Bbv12I GWGCWC 3 cut(s) 130, 482, 521
BbvI GCAGC 1 cut(s) 261
BccI CCATC 4 cut(s) 16, 383, 433, 439
BcnI CCSGG 3 cut(s) 290, 405, 456
BcoDI GTCTC 1 cut(s) 388
BfoI RGCGCY 1 cut(s) 473
BglI GCCNNNNNGGC 1 cut(s) 360
BisI GCNGC 5 cut(s) 45, 69, 250, 468, 473
BlsI GCNGC 5 cut(s) 46, 70, 251, 469, 474
Bme1390I CCNGG 3 cut(s) 290, 405, 456
Bme18I GGWCC 1 cut(s) 108
BmgBI CACGTC 1 cut(s) 399
BmgT120I GGNCC 2 cut(s) 108, 287
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 3 cut(s) 290, 405, 456
BmsI GCATC 2 cut(s) 242, 398
BpuMI CCSGG 3 cut(s) 290, 405, 456
BsaHI GRCGYC 2 cut(s) 149, 470
BsaJI CCNNGG 2 cut(s) 455, 465
BsaWI WCCGGW 1 cut(s) 122
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 122, 497, 535
Bse118I RCCGGY 3 cut(s) 122, 284, 314
Bse1I ACTGG 1 cut(s) 355
BseDI CCNNGG 2 cut(s) 455, 465
BseGI GGATG 1 cut(s) 485
BseLI CCNNNNNNNGG 4 cut(s) 88, 122, 497, 535
BseMII CTCAG 1 cut(s) 399
BseNI ACTGG 1 cut(s) 355
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 1 cut(s) 261
BsgI GTGCAG 2 cut(s) 319, 405
Bsh1236I CGCG 1 cut(s) 467
BshFI GGCC 3 cut(s) 288, 293, 363
BshNI GGYRCC 1 cut(s) 469
BshTI ACCGGT 1 cut(s) 122
BsiHKAI GWGCWC 3 cut(s) 130, 482, 521
BsiSI CCGG 7 cut(s) 123, 285, 290, 315, 360, 405, 455
BslFI GGGAC 1 cut(s) 511
BslI CCNNNNNNNGG 4 cut(s) 88, 122, 497, 535
BsmAI GTCTC 1 cut(s) 388
BsmBI CGTCTC 1 cut(s) 388
BsmFI GGGAC 1 cut(s) 511
BsnI GGCC 3 cut(s) 288, 293, 363
Bsp1286I GDGCHC 3 cut(s) 130, 482, 521
BspACI CCGC 6 cut(s) 44, 68, 312, 465, 467, 473
BspANI GGCC 3 cut(s) 288, 293, 363
BspCNI CTCAG 1 cut(s) 398
BspFNI CGCG 1 cut(s) 467
BspLI GGNNCC 1 cut(s) 471
BspQI GCTCTTC 1 cut(s) 487
BspT107I GGYRCC 1 cut(s) 469
BsrFI RCCGGY 3 cut(s) 122, 284, 314
BsrI ACTGG 1 cut(s) 355
BssAI RCCGGY 3 cut(s) 122, 284, 314
BssECI CCNNGG 2 cut(s) 455, 465
BssNI GRCGYC 2 cut(s) 149, 470
Bst4CI ACNGT 2 cut(s) 60, 382
Bst6I CTCTTC 1 cut(s) 487
BstACI GRCGYC 2 cut(s) 149, 470
BstC8I GCNNGC 2 cut(s) 316, 372
BstDEI CTNAG 1 cut(s) 385
BstDSI CCRYGG 1 cut(s) 465
BstEII GGTNACC 1 cut(s) 460
BstF5I GGATG 1 cut(s) 485
BstFNI CGCG 1 cut(s) 467
BstH2I RGCGCY 1 cut(s) 473
BstHHI GCGC 1 cut(s) 472
BstMAI GTCTC 1 cut(s) 388
BstMWI GCNNNNNNNGC 2 cut(s) 360, 500
BstPI GGTNACC 1 cut(s) 460
BstSCI CCNGG 3 cut(s) 288, 403, 454
BstSLI GKGCMC 1 cut(s) 130
BstUI CGCG 1 cut(s) 467
BstV1I GCAGC 1 cut(s) 261
BsuRI GGCC 3 cut(s) 288, 293, 363
BtgI CCRYGG 1 cut(s) 465
BtrI CACGTC 1 cut(s) 399
BtsCI GGATG 1 cut(s) 485
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 65, 349
Cac8I GCNNGC 2 cut(s) 316, 372
CfoI GCGC 1 cut(s) 472
Cfr10I RCCGGY 3 cut(s) 122, 284, 314
Cfr13I GGNCC 2 cut(s) 108, 287
Cfr42I CCGCGG 1 cut(s) 468
CseI GACGC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 224
CspAI ACCGGT 1 cut(s) 122
CviAII CATG 2 cut(s) 83, 144
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 1 cut(s) 385
DinI GGCGCC 1 cut(s) 471
EaeI YGGCCR 2 cut(s) 291, 361
Eam1104I CTCTTC 1 cut(s) 487
EarI CTCTTC 1 cut(s) 487
EciI GGCGGA 1 cut(s) 301
Ecl136II GAGCTC 1 cut(s) 480
Eco24I GRGCYC 1 cut(s) 482
Eco47I GGWCC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 480
Eco91I GGTNACC 1 cut(s) 460
EcoICRI GAGCTC 1 cut(s) 480
EcoO65I GGTNACC 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 482
EgeI GGCGCC 1 cut(s) 471
EheI GGCGCC 1 cut(s) 471
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 2 cut(s) 86, 147
FaiI YATR 4 cut(s) 84, 113, 138, 145
FaqI GGGAC 1 cut(s) 511
FatI CATG 2 cut(s) 82, 143
Fnu4HI GCNGC 5 cut(s) 45, 69, 250, 468, 473
FokI GGATG 1 cut(s) 472
FriOI GRGCYC 1 cut(s) 482
Fsp4HI GCNGC 5 cut(s) 45, 69, 250, 468, 473
GlaI GCGC 1 cut(s) 471
GluI GCNGC 5 cut(s) 45, 69, 250, 468, 473
HaeII RGCGCY 1 cut(s) 473
HaeIII GGCC 3 cut(s) 288, 293, 363
HapII CCGG 7 cut(s) 123, 285, 290, 315, 360, 405, 455
HgaI GACGC 1 cut(s) 138
HhaI GCGC 1 cut(s) 472
Hin1I GRCGYC 2 cut(s) 149, 470
Hin1II CATG 2 cut(s) 86, 147
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HinfI GANTC 1 cut(s) 242
HpaII CCGG 7 cut(s) 123, 285, 290, 315, 360, 405, 455
HphI GGTGA 5 cut(s) 271, 298, 370, 393, 472
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 3 cut(s) 173, 196, 218
Hpy8I GTNNAC 1 cut(s) 128
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 426
HpyCH4III ACNGT 2 cut(s) 60, 382
HpyCH4IV ACGT 2 cut(s) 213, 398
HpyCH4V TGCA 4 cut(s) 128, 249, 336, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 360, 500
HpyF3I CTNAG 1 cut(s) 385
HpySE526I ACGT 2 cut(s) 213, 398
Hsp92I GRCGYC 2 cut(s) 149, 470
Hsp92II CATG 2 cut(s) 86, 147
HspAI GCGC 1 cut(s) 470
KasI GGCGCC 1 cut(s) 469
KroI GCCGGC 1 cut(s) 314
KroNI GCCGGC 1 cut(s) 316
KspI CCGCGG 1 cut(s) 468
LguI GCTCTTC 1 cut(s) 487
LmnI GCTCC 1 cut(s) 257
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 2 cut(s) 242, 398
MaeII ACGT 2 cut(s) 213, 398
MaeIII GTNAC 4 cut(s) 139, 196, 399, 460
MboII GAAGA 3 cut(s) 25, 28, 474
MhlI GDGCHC 3 cut(s) 130, 482, 521
Mly113I GGCGCC 1 cut(s) 470
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 3 cut(s) 86, 319, 401
MreI CGCCGGCG 1 cut(s) 314
MroNI GCCGGC 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 7 cut(s) 123, 285, 290, 315, 360, 405, 455
MspR9I CCNGG 3 cut(s) 290, 405, 456
MvnI CGCG 1 cut(s) 467
MwoI GCNNNNNNNGC 2 cut(s) 360, 500
NaeI GCCGGC 1 cut(s) 316
NarI GGCGCC 1 cut(s) 470
NciI CCSGG 3 cut(s) 290, 405, 456
NgoMIV GCCGGC 1 cut(s) 314
NlaIII CATG 2 cut(s) 86, 147
NlaIV GGNNCC 1 cut(s) 471
NmeAIII GCCGAG 1 cut(s) 501
NmuCI GTSAC 4 cut(s) 139, 196, 399, 460
PciSI GCTCTTC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PdiI GCCGGC 1 cut(s) 316
PflMI CCANNNNNTGG 1 cut(s) 88
PinAI ACCGGT 1 cut(s) 122
PkrI GCNGC 5 cut(s) 46, 70, 251, 469, 474
PleI GAGTC 1 cut(s) 236
PluTI GGCGCC 1 cut(s) 473
PpsI GAGTC 1 cut(s) 236
Psp124BI GAGCTC 1 cut(s) 482
PspEI GGTNACC 1 cut(s) 460
PspN4I GGNNCC 1 cut(s) 471
PspPI GGNCC 2 cut(s) 108, 287
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SacI GAGCTC 1 cut(s) 482
SacII CCGCGG 1 cut(s) 468
SapI GCTCTTC 1 cut(s) 487
SatI GCNGC 5 cut(s) 45, 69, 250, 468, 473
Sau96I GGNCC 2 cut(s) 108, 287
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 3 cut(s) 290, 405, 456
SduI GDGCHC 3 cut(s) 130, 482, 521
SetI ASST 8 cut(s) 97, 216, 254, 311, 372, 401, 445, 482
SfaNI GCATC 2 cut(s) 242, 398
SfoI GGCGCC 1 cut(s) 471
Sfr303I CCGCGG 1 cut(s) 468
SgrAI CRCCGGYG 1 cut(s) 314
SgrBI CCGCGG 1 cut(s) 468
SinI GGWCC 1 cut(s) 108
SsiI CCGC 6 cut(s) 44, 68, 312, 465, 467, 473
SspDI GGCGCC 1 cut(s) 469
SstI GAGCTC 1 cut(s) 482
StyD4I CCNGG 3 cut(s) 288, 403, 454
TaaI ACNGT 2 cut(s) 60, 382
TaiI ACGT 2 cut(s) 216, 401
TaqI TCGA 1 cut(s) 240
TauI GCSGC 4 cut(s) 47, 71, 470, 475
TscAI CASTG 2 cut(s) 65, 356
TseFI GTSAC 4 cut(s) 139, 196, 399, 460
TseI GCWGC 1 cut(s) 249
Tsp45I GTSAC 4 cut(s) 139, 196, 399, 460
TspDTI ATGAA 1 cut(s) 474
TspRI CASTG 2 cut(s) 65, 356
Van91I CCANNNNNTGG 1 cut(s) 88
VneI GTGCAC 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.