Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001282

Physical Location & Seq

Genomic Coordinates Reverse (-)

9382455 .. 9383498

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G112300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAGAGCAAAATGGTGGTTGTTTTTGGTGTGTTTGTGGCCGTGTTTGTGCAATGTGTAGCAGCACAGACAACGCATGTGGTGGGAGATAGCTTAGGTTGGGCCATTCCACAATCTGGGCAACAATATGTCACTTGGGCATCTGCTAACAAGTTCGCCGTTGGTGATATTCTCACTTTCAACTTCGCCACCAACGAACACGATGTACAACAAGTACCCAAAGCATCGTTCGACTCATGCAGCTGGGACAAAGTAATTGGCTCGTCCATCAGAACAGGCCCAGCCAACGTCACGCTCACCTCAGCAGGCGACAACTACTTCATCTGCACTTACGGCACCCACTGCCAGTCAGGCCAGAAGCTAGCCATCACCGTCTCAGCCGCCGCCCCTGGAGCCTCGCCCTCTGCACCAACTTCTGCGCCACCACCACCACTGGCCACTACCCCTCCTACCACACCATCACCGTCATCGAAAAACCCTGCTGCTTGTGCTCCAGTCCCGTCACCGTCACCGTCCACGGCTGGCGGGCCCACTGTGAAGGCTACTCCCCGGTCTTCCCCGCCCCCTGATAATTCTTCTTCACCGGCTGTTGTGGCGGGTTTCTCTTTGTCCTTCTTGTCCCTTGTCATCATGGGTTTGTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

216

Amino Acids

21.95

Weight (kDa)

6.79

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20230
fragaria_vesca	FvH4_6g29770 FvH4_6g29800 FvH4_6g29800
malus_domestica	MD17G1210900.v1.1 MD17G1211000.v1.1 MD17G1211100.v1.1 MD17G1211200.v1.1 MD17G1211300.v1.1
prunus_persica	Prupe.3G086400_v2.0.a1 Prupe.3G086500_v2.0.a1 Prupe.3G112300_v2.0.a1 Prupe.7G246300_v2.0.a1
pyrus_communis	pycom17g21600 pycom17g21610
rosa_chinensis	RchiOBHm_Chr2g0135581 RchiOBHm_Chr2g0135591 RchiOBHm_Chr2g0135601
rosa_laevigata	RLG00000019415 RLG00000019417 RLG00000019468 RLG00000019470 RLG00000019471 RLG00000019472
rosa_multiflora	Rmu_sc0002398.1_g000005 Rmu_sc0002398.1_g000011 Rmu_sc0002792.1_g000051 Rmu_sc0006464.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109040 Rroxscaffold_2G00109060 Rroxscaffold_2G00109140 Rroxscaffold_2G00109150 Rroxscaffold_2G00109160 Rroxscaffold_4G00301440
rosa_rugosa	Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325600 Rorug02G0325800
rosa_samantha	Rh1BG222100 Rh1BG222500 Rh1DG248800 Rh1DG249300 Rh2AG376500 Rh2BG382500 Rh2BG382700 Rh2BG382900 Rh2CG361400 Rh2CG361600 Rh2CG361800 Rh2CG362200
rosa_wichuraiana	Rw0G018650 Rw0G018660 Rw2G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AccB7I	CCANNNNNTGG	1 cut(s)	116
AciI	CCGC	5 cut(s)	381, 384, 525, 560, 596
AcoI	YGGCCR	2 cut(s)	39, 435
AfaI	GTAC	2 cut(s)	207, 216
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	388
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	3 cut(s)	93, 243, 361
AluI	AGCT	3 cut(s)	93, 243, 361
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	1 cut(s)	379
AoxI	GGCC	6 cut(s)	39, 102, 277, 352, 435, 527
ApaI	GGGCCC	1 cut(s)	531
ApeKI	GCWGC	3 cut(s)	62, 240, 482
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	4 cut(s)	102, 278, 527, 528
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	7 cut(s)	176, 289, 361, 453, 495, 501, 573
AsuNHI	GCTAGC	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	531
BalI	TGGCCA	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	531
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	493
BbvCI	CCTCAGC	1 cut(s)	301
BbvI	GCAGC	3 cut(s)	74, 252, 469
BccI	CCATC	3 cut(s)	275, 374, 466
BceAI	ACGGC	4 cut(s)	26, 143, 349, 534
BciT130I	CCWGG	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	1 cut(s)	362
BglI	GCCNNNNNGGC	1 cut(s)	351
BisI	GCNGC	5 cut(s)	63, 241, 381, 384, 483
BlsI	GCNGC	5 cut(s)	64, 242, 382, 385, 484
Bme1390I	CCNGG	2 cut(s)	390, 550
BmgT120I	GGNCC	4 cut(s)	102, 278, 527, 528
BmiI	GGNNCC	3 cut(s)	337, 394, 529
BmrFI	CCNGG	2 cut(s)	390, 550
BmsI	GCATC	2 cut(s)	149, 233
BmtI	GCTAGC	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	546
BpmI	CTGGAG	2 cut(s)	411, 477
Bpu10I	CCTNAGC	2 cut(s)	94, 301
BpuMI	CCSGG	1 cut(s)	550
BsaJI	CCNNGG	3 cut(s)	388, 516, 548
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	583
Bse1I	ACTGG	3 cut(s)	346, 438, 494
Bse3DI	GCAATG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	3 cut(s)	388, 516, 548
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	315, 390
BseNI	ACTGG	3 cut(s)	346, 438, 494
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	3 cut(s)	74, 252, 469
BseYI	CCCAGC	2 cut(s)	243, 280
BsgI	GTGCAG	2 cut(s)	310, 390
BshFI	GGCC	6 cut(s)	41, 104, 279, 354, 437, 529
BshNI	GGYRCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	550, 584
BslFI	GGGAC	3 cut(s)	260, 482, 604
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	379
BsmBI	CGTCTC	1 cut(s)	379
BsmFI	GGGAC	3 cut(s)	260, 482, 604
BsnI	GGCC	6 cut(s)	41, 104, 279, 354, 437, 529
Bsp120I	GGGCCC	1 cut(s)	527
Bsp1286I	GDGCHC	2 cut(s)	493, 531
Bsp1407I	TGTACA	1 cut(s)	205
BspACI	CCGC	5 cut(s)	381, 384, 525, 560, 596
BspANI	GGCC	6 cut(s)	41, 104, 279, 354, 437, 529
BspCNI	CTCAG	2 cut(s)	314, 389
BspLI	GGNNCC	3 cut(s)	337, 394, 529
BspOI	GCTAGC	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	583
BsrGI	TGTACA	1 cut(s)	205
BsrI	ACTGG	3 cut(s)	346, 438, 494
BssAI	RCCGGY	1 cut(s)	583
BssECI	CCNNGG	3 cut(s)	388, 516, 548
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	5 cut(s)	373, 465, 507, 513, 535
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstAUI	TGTACA	1 cut(s)	205
BstC8I	GCNNGC	4 cut(s)	307, 363, 523, 527
BstDEI	CTNAG	3 cut(s)	94, 301, 376
BstDSI	CCRYGG	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	421
BstMAI	GTCTC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	6 cut(s)	333, 342, 351, 392, 488, 593
BstNI	CCWGG	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	388, 548
BstSLI	GKGCMC	1 cut(s)	531
BstV1I	GCAGC	3 cut(s)	74, 252, 469
BstV2I	GAAGAC	1 cut(s)	546
BsuRI	GGCC	6 cut(s)	41, 104, 279, 354, 437, 529
BtgI	CCRYGG	1 cut(s)	516
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	3 cut(s)	340, 431, 531
Cac8I	GCNNGC	4 cut(s)	307, 363, 523, 527
CfoI	GCGC	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	583
Cfr13I	GGNCC	4 cut(s)	102, 278, 527, 528
Csp6I	GTAC	2 cut(s)	206, 215
CspCI	CAANNNNNGTGG	2 cut(s)	60, 95
CviAII	CATG	3 cut(s)	77, 237, 631
CviQI	GTAC	2 cut(s)	206, 215
DdeI	CTNAG	3 cut(s)	94, 301, 376
EaeI	YGGCCR	2 cut(s)	39, 435
Eco24I	GRGCYC	1 cut(s)	531
EcoRII	CCWGG	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	531
Esp3I	CGTCTC	1 cut(s)	379
FaeI	CATG	3 cut(s)	80, 240, 634
FaiI	YATR	4 cut(s)	78, 129, 238, 632
FaqI	GGGAC	3 cut(s)	260, 482, 604
FatI	CATG	3 cut(s)	76, 236, 630
FauI	CCCGC	3 cut(s)	518, 567, 589
Fnu4HI	GCNGC	5 cut(s)	63, 241, 381, 384, 483
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	5 cut(s)	63, 241, 381, 384, 483
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	5 cut(s)	63, 241, 381, 384, 483
GsaI	CCCAGC	2 cut(s)	247, 284
GsuI	CTGGAG	2 cut(s)	411, 477
HaeIII	GGCC	6 cut(s)	41, 104, 279, 354, 437, 529
HapII	CCGG	2 cut(s)	550, 584
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	3 cut(s)	80, 240, 634
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	2 cut(s)	550, 584
HphI	GGTGA	7 cut(s)	176, 289, 361, 453, 495, 501, 573
Hpy166II	GTNNAC	1 cut(s)	516
Hpy188I	TCNGA	1 cut(s)	272
Hpy8I	GTNNAC	1 cut(s)	516
HpyAV	CCTTC	2 cut(s)	532, 622
HpyCH4III	ACNGT	5 cut(s)	373, 465, 507, 513, 535
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	4 cut(s)	52, 240, 327, 407
HpyF10VI	GCNNNNNNNGC	6 cut(s)	333, 342, 351, 392, 488, 593
HpyF3I	CTNAG	3 cut(s)	94, 301, 376
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	80, 240, 634
HspAI	GCGC	1 cut(s)	419
LmnI	GCTCC	2 cut(s)	392, 496
Lsp1109I	GCAGC	3 cut(s)	74, 252, 469
LweI	GCATC	2 cut(s)	149, 233
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	4 cut(s)	130, 289, 501, 507
MboII	GAAGA	3 cut(s)	546, 567, 570
MhlI	GDGCHC	2 cut(s)	493, 531
MlsI	TGGCCA	1 cut(s)	437
MluCI	AATT	2 cut(s)	255, 571
MluNI	TGGCCA	1 cut(s)	437
MlyI	GAGTC	1 cut(s)	227
MnlI	CCTC	4 cut(s)	310, 406, 412, 456
Mox20I	TGGCCA	1 cut(s)	437
MscI	TGGCCA	1 cut(s)	437
Msp20I	TGGCCA	1 cut(s)	437
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	2 cut(s)	550, 584
MspR9I	CCNGG	2 cut(s)	390, 550
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	6 cut(s)	333, 342, 351, 392, 488, 593
NciI	CCSGG	1 cut(s)	550
NheI	GCTAGC	1 cut(s)	361
NlaIII	CATG	3 cut(s)	80, 240, 634
NlaIV	GGNNCC	3 cut(s)	337, 394, 529
NmuCI	GTSAC	4 cut(s)	130, 289, 501, 507
NspI	RCATGY	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	116
PkrI	GCNGC	5 cut(s)	64, 242, 382, 385, 484
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	388
PspFI	CCCAGC	2 cut(s)	243, 280
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	3 cut(s)	337, 394, 529
PspOMI	GGGCCC	1 cut(s)	527
PspPI	GGNCC	4 cut(s)	102, 278, 527, 528
PsrI	GAACNNNNNNTAC	2 cut(s)	189, 221
PvuII	CAGCTG	1 cut(s)	243
RsaI	GTAC	2 cut(s)	207, 216
RsaNI	GTAC	2 cut(s)	206, 215
SatI	GCNGC	5 cut(s)	63, 241, 381, 384, 483
Sau96I	GGNCC	4 cut(s)	102, 278, 527, 528
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	390, 550
SduI	GDGCHC	2 cut(s)	493, 531
SetI	ASST	6 cut(s)	95, 100, 245, 291, 302, 363
SfaNI	GCATC	2 cut(s)	149, 233
Sse9I	AATT	2 cut(s)	255, 571
SsiI	CCGC	5 cut(s)	381, 384, 525, 560, 596
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	2 cut(s)	388, 548
TaaI	ACNGT	5 cut(s)	373, 465, 507, 513, 535
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	231, 470
TasI	AATT	2 cut(s)	255, 571
TatI	WGTACW	1 cut(s)	205
TauI	GCSGC	2 cut(s)	383, 386
TscAI	CASTG	3 cut(s)	347, 438, 538
TseFI	GTSAC	4 cut(s)	130, 289, 501, 507
TseI	GCWGC	3 cut(s)	62, 240, 482
Tsp45I	GTSAC	4 cut(s)	130, 289, 501, 507
TspDTI	ATGAA	1 cut(s)	310
TspRI	CASTG	3 cut(s)	347, 438, 538
Van91I	CCANNNNNTGG	1 cut(s)	116
XceI	RCATGY	1 cut(s)	80
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.