Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001282

Physical Location & Seq

Genomic Coordinates Reverse (-)

39973895 .. 39974155

Gene Structure 261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0325800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGAAAGTGTACAAGGGGAATGTAAGGAACCGTTATAGACCTGAGGGTTGCATAGCTGAAAATTATATTAGTGAAGAAGCTGTAGAATTTTGCTCCGAGTACTTATCAAATGCCAATCCTGTTGGAGTCCCCAAGCCTAAAGCAAAACAAACGAAGCCTTTATCCATAGCAACGCCGGTGAAAGTGGACGAGAAAAACTGGCAGCAAGCACATCTTAATGTCTTGACGAATAATGATGAAGTCTGGCCTTATATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

86

Amino Acids

9.85

Weight (kDa)

8.56

Isoelectric Point (pI)

17.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4218	PF13960	3 - 39	1e-09	Domain of unknown function (DUF4218)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20230
fragaria_vesca	FvH4_6g29770 FvH4_6g29800 FvH4_6g29800
malus_domestica	MD17G1210900.v1.1 MD17G1211000.v1.1 MD17G1211100.v1.1 MD17G1211200.v1.1 MD17G1211300.v1.1
prunus_persica	Prupe.3G086400_v2.0.a1 Prupe.3G086500_v2.0.a1 Prupe.3G112300_v2.0.a1 Prupe.7G246300_v2.0.a1
pyrus_communis	pycom17g21600 pycom17g21610
rosa_chinensis	RchiOBHm_Chr2g0135581 RchiOBHm_Chr2g0135591 RchiOBHm_Chr2g0135601
rosa_laevigata	RLG00000019415 RLG00000019417 RLG00000019468 RLG00000019470 RLG00000019471 RLG00000019472
rosa_multiflora	Rmu_sc0002398.1_g000005 Rmu_sc0002398.1_g000011 Rmu_sc0002792.1_g000051 Rmu_sc0006464.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109040 Rroxscaffold_2G00109060 Rroxscaffold_2G00109140 Rroxscaffold_2G00109150 Rroxscaffold_2G00109160 Rroxscaffold_4G00301440
rosa_rugosa	Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325600 Rorug02G0325800
rosa_samantha	Rh1BG222100 Rh1BG222500 Rh1DG248800 Rh1DG249300 Rh2AG376500 Rh2BG382500 Rh2BG382700 Rh2BG382900 Rh2CG361400 Rh2CG361600 Rh2CG361800 Rh2CG362200
rosa_wichuraiana	Rw0G018650 Rw0G018660 Rw2G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	86
AfaI	GTAC	2 cut(s)	11, 101
AluBI	AGCT	2 cut(s)	56, 80
AluI	AGCT	2 cut(s)	56, 80
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	190
AxyI	CCTNAGG	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	214
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
BmcAI	AGTACT	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	29
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	203
Bse21I	CCTNAGG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	214
BshFI	GGCC	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	247
Bsp1407I	TGTACA	1 cut(s)	9
BspANI	GGCC	1 cut(s)	247
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	175
BsrGI	TGTACA	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	32
BstAUI	TGTACA	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	42
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	214
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	207
Cfr10I	RCCGGY	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	10, 100
CviJI	RGCY	5 cut(s)	56, 80, 136, 157, 247
CviKI_1	RGCY	5 cut(s)	56, 80, 136, 157, 247
CviQI	GTAC	2 cut(s)	10, 100
DdeI	CTNAG	1 cut(s)	42
Eco81I	CCTNAGG	1 cut(s)	42
FaiI	YATR	5 cut(s)	36, 53, 66, 167, 252
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	1 cut(s)	113
Fnu4HI	GCNGC	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	247
HapII	CCGG	1 cut(s)	176
HinfI	GANTC	1 cut(s)	126
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	10, 187
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	2 cut(s)	10, 187
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	5 cut(s)	54, 132, 184, 189, 229
Lsp1109I	GCAGC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	86
MluCI	AATT	2 cut(s)	61, 86
MlyI	GAGTC	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	1 cut(s)	37
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	1 cut(s)	176
NlaIV	GGNNCC	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	29
RsaI	GTAC	2 cut(s)	11, 101
RsaNI	GTAC	2 cut(s)	10, 100
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	203
ScaI	AGTACT	1 cut(s)	101
SchI	GAGTC	1 cut(s)	135
SetI	ASST	3 cut(s)	43, 58, 82
SfcI	CTRYAG	1 cut(s)	81
SgrAI	CRCCGGYG	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	2 cut(s)	61, 86
TaaI	ACNGT	1 cut(s)	32
TasI	AATT	2 cut(s)	61, 86
TatI	WGTACW	2 cut(s)	9, 99
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseI	GCWGC	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	17, 252
XapI	RAATTY	1 cut(s)	86
ZrmI	AGTACT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.