Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001282

Physical Location & Seq

Genomic Coordinates Reverse (-)

56389005 .. 56400391

Gene Structure 11387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG376500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTGGTGGGAGGTAGCTAGCGTAGGCTGGACCATACCACAGAATGGTGCACAAGAGTATGTCACTTGGGCGTCTGGTGAGAAGTTCATAGTTGGTGATGTTCTAATCTTCAACTTCGCGACAGACGCACACGACGTAGTGCAAGTACCCAAAGCATCGTTCGACTCATGCAGCTCCGCCAACCCAATCGCCAGTACCATCACCACGGGCCCGGCCAACATCACTCTCACATCTGCCGGCGACCATTACTACATCTGCACTTTCAGCCGCCACTGCCAGTCCGGCCAGAAGCTCGCCATCACCGTCTCAGCATCCGCCACGTCACCCGGAGCCTCCCCTTCTGCATCAACTCCTATGTCCCCACCTCCACCCACTACCACTACTACTCTCCGCCACTGCCAGTCCGGCCAGAAGCTCGCCATCACCGTCTCAGCATCCGCCACGTCACCCGGAGCCTCCCCTTCTGCATCAACTCCTATGTCCCCACCTCCACCCACTACCACTACTACTCCTACCACGCCTTCACCCACATCTGACGCCCCGTGCCCTCCGGTCCAAGCACCATCTCCGTCCACCAAAACCACGGGGCCCACAGCTAGCTCCACACCAGGATCCACCGTGTTGCCGCCGAGCTCTTCTTCCCCTGCC

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

216

Amino Acids

21.82

Weight (kDa)

6.0

Isoelectric Point (pI)

65.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	10 - 96	7.7e-26	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20230
fragaria_vesca	FvH4_6g29770 FvH4_6g29800 FvH4_6g29800
malus_domestica	MD17G1210900.v1.1 MD17G1211000.v1.1 MD17G1211100.v1.1 MD17G1211200.v1.1 MD17G1211300.v1.1
prunus_persica	Prupe.3G086400_v2.0.a1 Prupe.3G086500_v2.0.a1 Prupe.3G112300_v2.0.a1 Prupe.7G246300_v2.0.a1
pyrus_communis	pycom17g21600 pycom17g21610
rosa_chinensis	RchiOBHm_Chr2g0135581 RchiOBHm_Chr2g0135591 RchiOBHm_Chr2g0135601
rosa_laevigata	RLG00000019415 RLG00000019417 RLG00000019468 RLG00000019470 RLG00000019471 RLG00000019472
rosa_multiflora	Rmu_sc0002398.1_g000005 Rmu_sc0002398.1_g000011 Rmu_sc0002792.1_g000051 Rmu_sc0006464.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109040 Rroxscaffold_2G00109060 Rroxscaffold_2G00109140 Rroxscaffold_2G00109150 Rroxscaffold_2G00109160 Rroxscaffold_4G00301440
rosa_rugosa	Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325600 Rorug02G0325800
rosa_samantha	Rh1BG222100 Rh1BG222500 Rh1DG248800 Rh1DG249300 Rh2AG376500 Rh2BG382500 Rh2BG382700 Rh2BG382900 Rh2CG361400 Rh2CG361600 Rh2CG361800 Rh2CG362200
rosa_wichuraiana	Rw0G018650 Rw0G018660 Rw2G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccII	CGCG	1 cut(s)	119
AciI	CCGC	6 cut(s)	177, 268, 315, 391, 438, 626
AclWI	GGATC	2 cut(s)	606, 619
AcoI	YGGCCR	3 cut(s)	213, 283, 406
AcyI	GRCGYC	2 cut(s)	71, 537
AfaI	GTAC	2 cut(s)	147, 196
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	112
AjiI	CACGTC	2 cut(s)	321, 444
AjnI	CCWGG	1 cut(s)	607
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	7 cut(s)	17, 174, 292, 415, 596, 600, 633
AluI	AGCT	7 cut(s)	17, 174, 292, 415, 596, 600, 633
Alw21I	GWGCWC	2 cut(s)	52, 635
Alw26I	GTCTC	2 cut(s)	310, 433
Alw44I	GTGCAC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	606, 619
AoxI	GGCC	5 cut(s)	208, 213, 283, 406, 587
ApaI	GGGCCC	2 cut(s)	212, 591
ApaLI	GTGCAC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	171
AspS9I	GGNCC	6 cut(s)	30, 208, 209, 553, 587, 588
AsuC2I	CCSGG	3 cut(s)	212, 327, 450
AsuHPI	GGTGA	8 cut(s)	89, 107, 193, 292, 315, 415, 438, 516
AsuNHI	GCTAGC	2 cut(s)	17, 596
AvaII	GGWCC	2 cut(s)	30, 553
BaeGI	GKGCMC	4 cut(s)	52, 212, 548, 591
BamHI	GGATCC	1 cut(s)	611
BanII	GRGCYC	3 cut(s)	212, 591, 635
Bbv12I	GWGCWC	2 cut(s)	52, 635
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	4 cut(s)	206, 305, 428, 571
BciT130I	CCWGG	1 cut(s)	609
BcnI	CCSGG	3 cut(s)	212, 327, 450
BcoDI	GTCTC	2 cut(s)	310, 433
BfaI	CTAG	2 cut(s)	18, 597
BglI	GCCNNNNNGGC	2 cut(s)	282, 405
BisI	GCNGC	3 cut(s)	172, 268, 626
BlsI	GCNGC	3 cut(s)	173, 269, 627
Bme1390I	CCNGG	4 cut(s)	212, 327, 450, 609
Bme18I	GGWCC	2 cut(s)	30, 553
BmgBI	CACGTC	2 cut(s)	321, 444
BmgT120I	GGNCC	6 cut(s)	30, 208, 209, 553, 587, 588
BmiI	GGNNCC	6 cut(s)	210, 331, 454, 588, 589, 613
BmrFI	CCNGG	4 cut(s)	212, 327, 450, 609
BmsI	GCATC	5 cut(s)	164, 320, 353, 443, 476
BmtI	GCTAGC	2 cut(s)	21, 600
BpuMI	CCSGG	3 cut(s)	212, 327, 450
BsaHI	GRCGYC	2 cut(s)	71, 537
BsaJI	CCNNGG	2 cut(s)	204, 582
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	3 cut(s)	192, 277, 400
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	2 cut(s)	204, 582
BseGI	GGATG	2 cut(s)	311, 434
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	2 cut(s)	321, 444
BseNI	ACTGG	3 cut(s)	192, 277, 400
BseSI	GKGCMC	4 cut(s)	52, 212, 548, 591
BseXI	GCAGC	1 cut(s)	183
BsgI	GTGCAG	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	5 cut(s)	210, 215, 285, 408, 589
BsiHKAI	GWGCWC	2 cut(s)	52, 635
BsiSI	CCGG	7 cut(s)	212, 237, 282, 327, 405, 450, 551
BslFI	GGGAC	2 cut(s)	343, 466
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	310, 433
BsmBI	CGTCTC	2 cut(s)	310, 433
BsmFI	GGGAC	2 cut(s)	343, 466
BsnI	GGCC	5 cut(s)	210, 215, 285, 408, 589
Bsp120I	GGGCCC	2 cut(s)	208, 587
Bsp1286I	GDGCHC	5 cut(s)	52, 212, 548, 591, 635
Bsp143I	GATC	1 cut(s)	611
Bsp68I	TCGCGA	1 cut(s)	119
BspACI	CCGC	6 cut(s)	177, 268, 315, 391, 438, 626
BspANI	GGCC	5 cut(s)	210, 215, 285, 408, 589
BspCNI	CTCAG	2 cut(s)	320, 443
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	6 cut(s)	210, 331, 454, 588, 589, 613
BspOI	GCTAGC	2 cut(s)	21, 600
BspPI	GGATC	2 cut(s)	606, 619
BspQI	GCTCTTC	1 cut(s)	640
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	3 cut(s)	192, 277, 400
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	204, 582
BssMI	GATC	1 cut(s)	611
BssNI	GRCGYC	2 cut(s)	71, 537
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	3 cut(s)	304, 427, 619
Bst6I	CTCTTC	1 cut(s)	640
BstACI	GRCGYC	2 cut(s)	71, 537
BstC8I	GCNNGC	5 cut(s)	19, 238, 294, 417, 598
BstDEI	CTNAG	2 cut(s)	307, 430
BstDSI	CCRYGG	2 cut(s)	204, 582
BstF5I	GGATG	2 cut(s)	311, 434
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	1 cut(s)	614
BstMAI	GTCTC	2 cut(s)	310, 433
BstMBI	GATC	1 cut(s)	611
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 264, 273, 282, 405
BstNI	CCWGG	1 cut(s)	609
BstSCI	CCNGG	4 cut(s)	210, 325, 448, 607
BstSLI	GKGCMC	4 cut(s)	52, 212, 548, 591
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	611
BsuRI	GGCC	5 cut(s)	210, 215, 285, 408, 589
BtgI	CCRYGG	2 cut(s)	204, 582
BtrI	CACGTC	2 cut(s)	321, 444
BtsCI	GGATG	2 cut(s)	311, 434
BtsI	GCAGTG	2 cut(s)	271, 394
BtsIMutI	CAGTG	2 cut(s)	271, 394
BtuMI	TCGCGA	1 cut(s)	119
Cac8I	GCNNGC	5 cut(s)	19, 238, 294, 417, 598
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	6 cut(s)	30, 208, 209, 553, 587, 588
CseI	GACGC	3 cut(s)	60, 134, 545
Csp6I	GTAC	2 cut(s)	146, 195
CviAII	CATG	1 cut(s)	168
CviQI	GTAC	2 cut(s)	146, 195
DdeI	CTNAG	2 cut(s)	307, 430
DpnI	GATC	1 cut(s)	613
DpnII	GATC	1 cut(s)	611
EaeI	YGGCCR	3 cut(s)	213, 283, 406
Eam1104I	CTCTTC	1 cut(s)	640
EarI	CTCTTC	1 cut(s)	640
EciI	GGCGGA	4 cut(s)	166, 304, 380, 427
Ecl136II	GAGCTC	1 cut(s)	633
Eco24I	GRGCYC	3 cut(s)	212, 591, 635
Eco47I	GGWCC	2 cut(s)	30, 553
Eco53kI	GAGCTC	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	633
EcoO109I	RGGNCCY	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	607
EcoT38I	GRGCYC	3 cut(s)	212, 591, 635
Esp3I	CGTCTC	2 cut(s)	310, 433
FaeI	CATG	1 cut(s)	171
FaiI	YATR	6 cut(s)	35, 60, 89, 169, 356, 479
FaqI	GGGAC	2 cut(s)	343, 466
FatI	CATG	1 cut(s)	167
Fnu4HI	GCNGC	3 cut(s)	172, 268, 626
FokI	GGATG	2 cut(s)	298, 421
FriOI	GRGCYC	3 cut(s)	212, 591, 635
Fsp4HI	GCNGC	3 cut(s)	172, 268, 626
FspBI	CTAG	2 cut(s)	18, 597
GluI	GCNGC	3 cut(s)	172, 268, 626
HaeIII	GGCC	5 cut(s)	210, 215, 285, 408, 589
HapII	CCGG	7 cut(s)	212, 237, 282, 327, 405, 450, 551
HgaI	GACGC	3 cut(s)	60, 134, 545
Hin1I	GRCGYC	2 cut(s)	71, 537
Hin1II	CATG	1 cut(s)	171
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	7 cut(s)	212, 237, 282, 327, 405, 450, 551
HphI	GGTGA	8 cut(s)	89, 107, 193, 292, 315, 415, 438, 516
Hpy166II	GTNNAC	2 cut(s)	50, 573
Hpy188I	TCNGA	1 cut(s)	535
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	2 cut(s)	50, 573
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	3 cut(s)	348, 471, 531
HpyCH4III	ACNGT	3 cut(s)	304, 427, 619
HpyCH4IV	ACGT	3 cut(s)	135, 320, 443
HpyCH4V	TGCA	6 cut(s)	50, 142, 171, 258, 344, 467
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 264, 273, 282, 405
HpyF3I	CTNAG	2 cut(s)	307, 430
HpySE526I	ACGT	3 cut(s)	135, 320, 443
Hsp92I	GRCGYC	2 cut(s)	71, 537
Hsp92II	CATG	1 cut(s)	171
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	611
LguI	GCTCTTC	1 cut(s)	640
LmnI	GCTCC	4 cut(s)	179, 329, 452, 605
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	5 cut(s)	164, 320, 353, 443, 476
MaeI	CTAG	2 cut(s)	18, 597
MaeII	ACGT	3 cut(s)	135, 320, 443
MaeIII	GTNAC	3 cut(s)	61, 321, 444
MalI	GATC	1 cut(s)	613
MboI	GATC	1 cut(s)	611
MboII	GAAGA	3 cut(s)	100, 627, 630
MflI	RGATCY	1 cut(s)	611
MhlI	GDGCHC	5 cut(s)	52, 212, 548, 591, 635
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	6 cut(s)	4, 343, 375, 466, 498, 558
MroNI	GCCGGC	1 cut(s)	236
MspI	CCGG	7 cut(s)	212, 237, 282, 327, 405, 450, 551
MspR9I	CCNGG	4 cut(s)	212, 327, 450, 609
MvaI	CCWGG	1 cut(s)	609
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	5 cut(s)	125, 264, 273, 282, 405
NaeI	GCCGGC	1 cut(s)	238
NciI	CCSGG	3 cut(s)	212, 327, 450
NdeII	GATC	1 cut(s)	611
NgoMIV	GCCGGC	1 cut(s)	236
NheI	GCTAGC	2 cut(s)	17, 596
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	6 cut(s)	210, 331, 454, 588, 589, 613
NmuCI	GTSAC	3 cut(s)	61, 321, 444
NruI	TCGCGA	1 cut(s)	119
PciSI	GCTCTTC	1 cut(s)	640
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 300, 423
PdiI	GCCGGC	1 cut(s)	238
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	3 cut(s)	173, 269, 627
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	635
Psp6I	CCWGG	1 cut(s)	607
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	6 cut(s)	210, 331, 454, 588, 589, 613
PspOMI	GGGCCC	2 cut(s)	208, 587
PspPI	GGNCC	6 cut(s)	30, 208, 209, 553, 587, 588
PsuI	RGATCY	1 cut(s)	611
RruI	TCGCGA	1 cut(s)	119
RsaI	GTAC	2 cut(s)	147, 196
RsaNI	GTAC	2 cut(s)	146, 195
SacI	GAGCTC	1 cut(s)	635
SapI	GCTCTTC	1 cut(s)	640
SatI	GCNGC	3 cut(s)	172, 268, 626
Sau3AI	GATC	1 cut(s)	611
Sau96I	GGNCC	6 cut(s)	30, 208, 209, 553, 587, 588
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	4 cut(s)	212, 327, 450, 609
SduI	GDGCHC	5 cut(s)	52, 212, 548, 591, 635
SfaNI	GCATC	5 cut(s)	164, 320, 353, 443, 476
SinI	GGWCC	2 cut(s)	30, 553
SsiI	CCGC	6 cut(s)	177, 268, 315, 391, 438, 626
SspMI	CTAG	2 cut(s)	18, 597
SstI	GAGCTC	1 cut(s)	635
StyD4I	CCNGG	4 cut(s)	210, 325, 448, 607
TaaI	ACNGT	3 cut(s)	304, 427, 619
TaiI	ACGT	3 cut(s)	138, 323, 446
TaqI	TCGA	1 cut(s)	162
TauI	GCSGC	2 cut(s)	270, 628
TscAI	CASTG	2 cut(s)	278, 401
TseFI	GTSAC	3 cut(s)	61, 321, 444
TseI	GCWGC	1 cut(s)	171
Tsp45I	GTSAC	3 cut(s)	61, 321, 444
TspDTI	ATGAA	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	2 cut(s)	278, 401
Van91I	CCANNNNNTGG	1 cut(s)	44
VneI	GTGCAC	1 cut(s)	48
VpaK11BI	GGWCC	2 cut(s)	30, 553
XspI	CTAG	2 cut(s)	18, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.