Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006464.1

Orthogroup ID

OG0001282

Physical Location & Seq

Genomic Coordinates Reverse (-)

24947 .. 25639

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006464.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggagggccagaagaaaatgatggttgtttttgggttagttgcggctgtgtttctgcacagtgtggcagcgcagacgaagttcctagtcgctgatgttttggttttcaacttcgcgacaaacacacacgacgtagtggaagtacccaaagcatctttcgactcatgcagccccgccaacccaatcgacagcaccatcaccaccggcccgaccaacatcactctcaccgccgccggcgaccactactacatctgtactttcggacaccacttccagtccggccagaagctggccatcacggtctcaacatccgccacgtcacccggagcctccccttctgcatccactctcgtgtcgccagagccacccactgccactactactcctaccacgtgttcacccacatctgacgctccttacactactagaaaaatggcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

146

Amino Acids

15.23

Weight (kDa)

6.15

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20230
fragaria_vesca	FvH4_6g29770 FvH4_6g29800 FvH4_6g29800
malus_domestica	MD17G1210900.v1.1 MD17G1211000.v1.1 MD17G1211100.v1.1 MD17G1211200.v1.1 MD17G1211300.v1.1
prunus_persica	Prupe.3G086400_v2.0.a1 Prupe.3G086500_v2.0.a1 Prupe.3G112300_v2.0.a1 Prupe.7G246300_v2.0.a1
pyrus_communis	pycom17g21600 pycom17g21610
rosa_chinensis	RchiOBHm_Chr2g0135581 RchiOBHm_Chr2g0135591 RchiOBHm_Chr2g0135601
rosa_laevigata	RLG00000019415 RLG00000019417 RLG00000019468 RLG00000019470 RLG00000019471 RLG00000019472
rosa_multiflora	Rmu_sc0002398.1_g000005 Rmu_sc0002398.1_g000011 Rmu_sc0002792.1_g000051 Rmu_sc0006464.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109040 Rroxscaffold_2G00109060 Rroxscaffold_2G00109140 Rroxscaffold_2G00109150 Rroxscaffold_2G00109160 Rroxscaffold_4G00301440
rosa_rugosa	Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325600 Rorug02G0325800
rosa_samantha	Rh1BG222100 Rh1BG222500 Rh1DG248800 Rh1DG249300 Rh2AG376500 Rh2BG382500 Rh2BG382700 Rh2BG382900 Rh2CG361400 Rh2CG361600 Rh2CG361800 Rh2CG362200
rosa_wichuraiana	Rw0G018650 Rw0G018660 Rw2G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	289
AccII	CGCG	1 cut(s)	116
AciI	CCGC	5 cut(s)	44, 174, 228, 231, 312
AcoI	YGGCCR	2 cut(s)	280, 291
AcvI	CACGTG	1 cut(s)	393
AdeI	CACNNNGTG	1 cut(s)	64
AfaI	GTAC	2 cut(s)	144, 256
AfiI	CCNNNNNNNGG	1 cut(s)	289
AflIII	ACRYGT	1 cut(s)	392
AgsI	TTSAA	1 cut(s)	109
AjiI	CACGTC	1 cut(s)	318
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AleI	CACNNNNGTG	1 cut(s)	350
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	307
AlwNI	CAGNNNCTG	1 cut(s)	289
AoxI	GGCC	5 cut(s)	7, 205, 280, 291, 435
ApeKI	GCWGC	2 cut(s)	68, 168
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	7, 206
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	4 cut(s)	190, 217, 312, 390
BalI	TGGCCA	1 cut(s)	293
BauI	CACGAG	1 cut(s)	350
BbrPI	CACGTG	1 cut(s)	393
BbvI	GCAGC	2 cut(s)	80, 180
BccI	CCATC	3 cut(s)	16, 203, 302
BcnI	CCSGG	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	2 cut(s)	86, 426
BisI	GCNGC	4 cut(s)	45, 69, 169, 231
BlsI	GCNGC	4 cut(s)	46, 70, 170, 232
Bme1390I	CCNGG	1 cut(s)	324
BmgBI	CACGTC	1 cut(s)	318
BmgT120I	GGNCC	2 cut(s)	7, 206
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	2 cut(s)	161, 350
BpuMI	CCSGG	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse118I	RCCGGY	2 cut(s)	203, 233
Bse1I	ACTGG	1 cut(s)	274
BseGI	GGATG	2 cut(s)	308, 341
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseNI	ACTGG	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	80, 180
BsgI	GTGCAG	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	5 cut(s)	9, 207, 282, 293, 437
BsiSI	CCGG	4 cut(s)	204, 234, 279, 324
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	1 cut(s)	307
BsnI	GGCC	5 cut(s)	9, 207, 282, 293, 437
Bso31I	GGTCTC	1 cut(s)	307
Bsp68I	TCGCGA	1 cut(s)	116
BspACI	CCGC	5 cut(s)	44, 174, 228, 231, 312
BspANI	GGCC	5 cut(s)	9, 207, 282, 293, 437
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	307
BsrFI	RCCGGY	2 cut(s)	203, 233
BsrI	ACTGG	1 cut(s)	274
BssAI	RCCGGY	2 cut(s)	203, 233
BssSI	CACGAG	1 cut(s)	350
Bst2BI	CACGAG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	62, 301
BstBAI	YACGTR	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	235, 291
BstF5I	GGATG	2 cut(s)	308, 341
BstFNI	CGCG	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	322
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	80, 180
BsuRI	GGCC	5 cut(s)	9, 207, 282, 293, 437
BtrI	CACGTC	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	308, 341
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	67, 369
BtuMI	TCGCGA	1 cut(s)	116
Cac8I	GCNNGC	2 cut(s)	235, 291
CaiI	CAGNNNCTG	1 cut(s)	289
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	2 cut(s)	203, 233
Cfr13I	GGNCC	2 cut(s)	7, 206
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	143, 255
CviAII	CATG	1 cut(s)	165
CviQI	GTAC	2 cut(s)	143, 255
DraIII	CACNNNGTG	1 cut(s)	64
EaeI	YGGCCR	2 cut(s)	280, 291
EciI	GGCGGA	1 cut(s)	301
Eco31I	GGTCTC	1 cut(s)	307
Eco72I	CACGTG	1 cut(s)	393
FaeI	CATG	1 cut(s)	168
FaiI	YATR	1 cut(s)	166
FatI	CATG	1 cut(s)	164
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	45, 69, 169, 231
FokI	GGATG	2 cut(s)	295, 328
Fsp4HI	GCNGC	4 cut(s)	45, 69, 169, 231
FspBI	CTAG	2 cut(s)	86, 426
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	4 cut(s)	45, 69, 169, 231
HaeIII	GGCC	5 cut(s)	9, 207, 282, 293, 437
HapII	CCGG	4 cut(s)	204, 234, 279, 324
HgaI	GACGC	1 cut(s)	419
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	4 cut(s)	204, 234, 279, 324
HphI	GGTGA	4 cut(s)	190, 217, 312, 390
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	2 cut(s)	263, 409
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	1 cut(s)	398
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	2 cut(s)	62, 301
HpyCH4IV	ACGT	3 cut(s)	132, 317, 392
HpyCH4V	TGCA	3 cut(s)	58, 168, 341
HpySE526I	ACGT	3 cut(s)	132, 317, 392
Hsp92II	CATG	1 cut(s)	168
HspAI	GCGC	1 cut(s)	71
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	326, 418
LpnPI	CCDG	9 cut(s)	23, 217, 247, 275, 287, 292, 296, 337, 372
Lsp1109I	GCAGC	2 cut(s)	80, 180
LweI	GCATC	2 cut(s)	161, 350
MaeI	CTAG	2 cut(s)	86, 426
MaeII	ACGT	3 cut(s)	132, 317, 392
MaeIII	GTNAC	1 cut(s)	318
MboII	GAAGA	1 cut(s)	25
MlsI	TGGCCA	1 cut(s)	293
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	1 cut(s)	340
Mox20I	TGGCCA	1 cut(s)	293
MreI	CGCCGGCG	1 cut(s)	233
MroNI	GCCGGC	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	293
MspI	CCGG	4 cut(s)	204, 234, 279, 324
MspR9I	CCNGG	1 cut(s)	324
MvnI	CGCG	1 cut(s)	116
NaeI	GCCGGC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	324
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	1 cut(s)	168
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	318
NruI	TCGCGA	1 cut(s)	116
OliI	CACNNNNGTG	1 cut(s)	350
PdiI	GCCGGC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	289
PkrI	GCNGC	4 cut(s)	46, 70, 170, 232
PleI	GAGTC	1 cut(s)	155
PmaCI	CACGTG	1 cut(s)	393
PmlI	CACGTG	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	393
PspCI	CACGTG	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	2 cut(s)	7, 206
PstNI	CAGNNNCTG	1 cut(s)	289
RruI	TCGCGA	1 cut(s)	116
RsaI	GTAC	2 cut(s)	144, 256
RsaNI	GTAC	2 cut(s)	143, 255
RseI	CAYNNNNRTG	1 cut(s)	350
SatI	GCNGC	4 cut(s)	45, 69, 169, 231
Sau96I	GGNCC	2 cut(s)	7, 206
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	324
SetI	ASST	4 cut(s)	135, 291, 320, 395
SfaNI	GCATC	2 cut(s)	161, 350
SgrAI	CRCCGGYG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	350
SsiI	CCGC	5 cut(s)	44, 174, 228, 231, 312
SspMI	CTAG	2 cut(s)	86, 426
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	2 cut(s)	62, 301
TaiI	ACGT	3 cut(s)	135, 320, 395
TaqI	TCGA	2 cut(s)	159, 186
TatI	WGTACW	1 cut(s)	254
TauI	GCSGC	2 cut(s)	47, 233
TscAI	CASTG	2 cut(s)	67, 376
TseFI	GTSAC	1 cut(s)	318
TseI	GCWGC	2 cut(s)	68, 168
Tsp45I	GTSAC	1 cut(s)	318
TspRI	CASTG	2 cut(s)	67, 376
Van91I	CCANNNNNTGG	1 cut(s)	289
XspI	CTAG	2 cut(s)	86, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.