Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001282

Physical Location & Seq

Genomic Coordinates Forward (+)

25629086 .. 25630420

Gene Structure 1335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1211300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAGAGCAAGATGGTGATTGTTTTCGGTGTAGTTGTGGCTGTGTTCCTGCAAAATGTTGCAGCACAGACGGGACATGTGGTGGGAGGAAGCATAGGTTGGACCATCCCTCAATCTGGTGCACAAGAGTATGTCACTTGGGCTGCAAGTAACAAGTTCGTTGTTGGTGATACTCTCATTTTCAACTTCGCCACCAACGCACACGATGTACAAGAAGTACCCAAAGCATCATTCGACTCATGCAGTTCGGAAAACCCAATTGGCACGGCTATCACAACTGGCCCAGCAAACATCACTCTCACCTCTTCAGGCGACCACTACTACATCTGCACTTATGGCCGTCATTGCCAGTCGGGCCAGAAACTAGCCATCACCGTTTCAGCTGCCTCGCCAGGTGCCGCACCTTCTGTACCACCACCACCCTCTAACACCCCTCCAACTAGCCCTTCCCCTACATCAAATGACCCTGCTGCTTGCGCACCAGTCCCAGCTTCATCACCATCCATGAATGGAGGAGTACCCACCGTGAACATCACGCCGGGGTCGCCGCCTCCGCTGGGCTCTTCTGCACCTGCTGTTTTGGCTAGTTTCTCTTTGTCGGCCGCGGCTCTTATCGTGGGTTTGCTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

211

Amino Acids

21.11

Weight (kDa)

5.32

Isoelectric Point (pI)

61.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	34 - 120	3.8e-25	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20230
fragaria_vesca	FvH4_6g29770 FvH4_6g29800 FvH4_6g29800
malus_domestica	MD17G1210900.v1.1 MD17G1211000.v1.1 MD17G1211100.v1.1 MD17G1211200.v1.1 MD17G1211300.v1.1
prunus_persica	Prupe.3G086400_v2.0.a1 Prupe.3G086500_v2.0.a1 Prupe.3G112300_v2.0.a1 Prupe.7G246300_v2.0.a1
pyrus_communis	pycom17g21600 pycom17g21610
rosa_chinensis	RchiOBHm_Chr2g0135581 RchiOBHm_Chr2g0135591 RchiOBHm_Chr2g0135601
rosa_laevigata	RLG00000019415 RLG00000019417 RLG00000019468 RLG00000019470 RLG00000019471 RLG00000019472
rosa_multiflora	Rmu_sc0002398.1_g000005 Rmu_sc0002398.1_g000011 Rmu_sc0002792.1_g000051 Rmu_sc0006464.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109040 Rroxscaffold_2G00109060 Rroxscaffold_2G00109140 Rroxscaffold_2G00109150 Rroxscaffold_2G00109160 Rroxscaffold_4G00301440
rosa_rugosa	Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325600 Rorug02G0325800
rosa_samantha	Rh1BG222100 Rh1BG222500 Rh1DG248800 Rh1DG249300 Rh2AG376500 Rh2BG382500 Rh2BG382700 Rh2BG382900 Rh2CG361400 Rh2CG361600 Rh2CG361800 Rh2CG362200
rosa_wichuraiana	Rw0G018650 Rw0G018660 Rw2G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	580
Acc16I	TGCGCA	1 cut(s)	478
Acc36I	ACCTGC	1 cut(s)	580
AccB1I	GGYRCC	1 cut(s)	395
AccII	CGCG	1 cut(s)	605
AciI	CCGC	5 cut(s)	399, 548, 554, 603, 605
AcoI	YGGCCR	2 cut(s)	337, 600
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	4 cut(s)	210, 219, 411, 519
AfiI	CCNNNNNNNGG	2 cut(s)	116, 557
AflIII	ACRYGT	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	391
AjuI	GAANNNNNNNTTGG	8 cut(s)	82, 114, 215, 243, 247, 275, 430, 462
AluBI	AGCT	2 cut(s)	383, 491
AluI	AGCT	2 cut(s)	383, 491
Alw21I	GWGCWC	1 cut(s)	124
Alw44I	GTGCAC	1 cut(s)	120
AoxI	GGCC	4 cut(s)	280, 337, 355, 600
ApaLI	GTGCAC	1 cut(s)	120
ApeKI	GCWGC	4 cut(s)	62, 143, 383, 470
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	3 cut(s)	102, 281, 355
AsuC2I	CCSGG	1 cut(s)	540
AsuHPI	GGTGA	5 cut(s)	28, 179, 292, 364, 489
AvaII	GGWCC	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	563
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	4 cut(s)	74, 130, 370, 457
BccI	CCATC	4 cut(s)	7, 113, 377, 508
BceAI	ACGGC	2 cut(s)	282, 324
BciT130I	CCWGG	1 cut(s)	393
BcnI	CCSGG	1 cut(s)	540
BfaI	CTAG	3 cut(s)	365, 441, 585
BfuAI	ACCTGC	1 cut(s)	580
BglI	GCCNNNNNGGC	1 cut(s)	354
BisI	GCNGC	8 cut(s)	63, 144, 384, 399, 471, 548, 603, 606
BlsI	GCNGC	8 cut(s)	64, 145, 385, 400, 472, 549, 604, 607
Bme1390I	CCNGG	2 cut(s)	393, 540
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	3 cut(s)	102, 281, 355
BmiI	GGNNCC	1 cut(s)	397
BmrFI	CCNGG	2 cut(s)	393, 540
BmsI	GCATC	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	539, 603
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 557
Bse1I	ACTGG	3 cut(s)	283, 349, 482
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	539, 603
BseGI	GGATG	2 cut(s)	105, 500
BseLI	CCNNNNNNNGG	2 cut(s)	116, 557
BseMI	GCAATG	1 cut(s)	343
BseNI	ACTGG	3 cut(s)	283, 349, 482
BseRI	GAGGAG	1 cut(s)	528
BseSI	GKGCMC	1 cut(s)	124
BseX3I	CGGCCG	1 cut(s)	600
BseXI	GCAGC	4 cut(s)	74, 130, 370, 457
BseYI	CCCAGC	3 cut(s)	283, 487, 556
BsgI	GTGCAG	2 cut(s)	313, 552
Bsh1236I	CGCG	1 cut(s)	605
Bsh1285I	CGRYCG	1 cut(s)	603
BshFI	GGCC	4 cut(s)	282, 339, 357, 602
BshNI	GGYRCC	1 cut(s)	395
BsiEI	CGRYCG	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	539
BslFI	GGGAC	2 cut(s)	87, 470
BslI	CCNNNNNNNGG	2 cut(s)	116, 557
BsmFI	GGGAC	2 cut(s)	87, 470
BsnI	GGCC	4 cut(s)	282, 339, 357, 602
Bsp1286I	GDGCHC	2 cut(s)	124, 563
Bsp1407I	TGTACA	1 cut(s)	208
BspACI	CCGC	5 cut(s)	399, 548, 554, 603, 605
BspANI	GGCC	4 cut(s)	282, 339, 357, 602
BspFNI	CGCG	1 cut(s)	605
BspLI	GGNNCC	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	580
BspQI	GCTCTTC	1 cut(s)	568
BspT107I	GGYRCC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	343
BsrGI	TGTACA	1 cut(s)	208
BsrI	ACTGG	3 cut(s)	283, 349, 482
BssECI	CCNNGG	2 cut(s)	539, 603
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	2 cut(s)	376, 526
Bst6I	CTCTTC	2 cut(s)	310, 568
BstAUI	TGTACA	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	475
BstDSI	CCRYGG	1 cut(s)	603
BstF5I	GGATG	2 cut(s)	105, 500
BstFNI	CGCG	1 cut(s)	605
BstHHI	GCGC	1 cut(s)	479
BstMCI	CGRYCG	1 cut(s)	603
BstMWI	GCNNNNNNNGC	8 cut(s)	197, 336, 345, 354, 476, 544, 553, 581
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	391, 538
BstSLI	GKGCMC	1 cut(s)	124
BstUI	CGCG	1 cut(s)	605
BstV1I	GCAGC	4 cut(s)	74, 130, 370, 457
BstZI	CGGCCG	1 cut(s)	600
BsuRI	GGCC	4 cut(s)	282, 339, 357, 602
BtgI	CCRYGG	1 cut(s)	603
BtsCI	GGATG	2 cut(s)	105, 500
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	1 cut(s)	475
CfoI	GCGC	1 cut(s)	479
Cfr13I	GGNCC	3 cut(s)	102, 281, 355
Cfr42I	CCGCGG	1 cut(s)	606
Csp6I	GTAC	4 cut(s)	209, 218, 410, 518
CviAII	CATG	3 cut(s)	77, 240, 505
CviQI	GTAC	4 cut(s)	209, 218, 410, 518
EaeI	YGGCCR	2 cut(s)	337, 600
EagI	CGGCCG	1 cut(s)	600
Eam1104I	CTCTTC	2 cut(s)	310, 568
EarI	CTCTTC	2 cut(s)	310, 568
EclXI	CGGCCG	1 cut(s)	600
Eco24I	GRGCYC	1 cut(s)	563
Eco47I	GGWCC	1 cut(s)	102
Eco52I	CGGCCG	1 cut(s)	600
Eco57I	CTGAAG	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	563
FaeI	CATG	3 cut(s)	80, 243, 508
FaiI	YATR	6 cut(s)	78, 95, 132, 241, 336, 506
FaqI	GGGAC	2 cut(s)	87, 470
FatI	CATG	3 cut(s)	76, 239, 504
Fnu4HI	GCNGC	8 cut(s)	63, 144, 384, 399, 471, 548, 603, 606
FokI	GGATG	2 cut(s)	92, 487
FriOI	GRGCYC	1 cut(s)	563
Fsp4HI	GCNGC	8 cut(s)	63, 144, 384, 399, 471, 548, 603, 606
FspBI	CTAG	3 cut(s)	365, 441, 585
FspI	TGCGCA	1 cut(s)	478
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	8 cut(s)	63, 144, 384, 399, 471, 548, 603, 606
GsaI	CCCAGC	3 cut(s)	287, 491, 560
HaeIII	GGCC	4 cut(s)	282, 339, 357, 602
HapII	CCGG	1 cut(s)	539
HhaI	GCGC	1 cut(s)	479
Hin1II	CATG	3 cut(s)	80, 243, 508
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	5 cut(s)	28, 179, 292, 364, 489
Hpy166II	GTNNAC	2 cut(s)	122, 529
Hpy188I	TCNGA	1 cut(s)	250
Hpy8I	GTNNAC	2 cut(s)	122, 529
HpyAV	CCTTC	2 cut(s)	414, 456
HpyCH4III	ACNGT	2 cut(s)	376, 526
HpyCH4V	TGCA	7 cut(s)	52, 62, 122, 146, 243, 330, 569
HpyF10VI	GCNNNNNNNGC	8 cut(s)	197, 336, 345, 354, 476, 544, 553, 581
Hsp92II	CATG	3 cut(s)	80, 243, 508
HspAI	GCGC	1 cut(s)	477
KspI	CCGCGG	1 cut(s)	606
LguI	GCTCTTC	1 cut(s)	568
Lsp1109I	GCAGC	4 cut(s)	74, 130, 370, 457
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	3 cut(s)	365, 441, 585
MaeIII	GTNAC	2 cut(s)	133, 149
MboII	GAAGA	2 cut(s)	297, 555
MfeI	CAATTG	1 cut(s)	258
MhlI	GDGCHC	2 cut(s)	124, 563
MluCI	AATT	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	2 cut(s)	80, 461
MnlI	CCTC	8 cut(s)	80, 120, 313, 397, 433, 444, 506, 561
MspA1I	CMGCKG	3 cut(s)	383, 556, 605
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	2 cut(s)	393, 540
MunI	CAATTG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	393
MvnI	CGCG	1 cut(s)	605
MwoI	GCNNNNNNNGC	8 cut(s)	197, 336, 345, 354, 476, 544, 553, 581
NciI	CCSGG	1 cut(s)	540
NlaIII	CATG	3 cut(s)	80, 243, 508
NlaIV	GGNNCC	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	133
NsbI	TGCGCA	1 cut(s)	478
NspI	RCATGY	1 cut(s)	80
PaqCI	CACCTGC	1 cut(s)	580
PciI	ACATGT	1 cut(s)	76
PciSI	GCTCTTC	1 cut(s)	568
PkrI	GCNGC	8 cut(s)	64, 145, 385, 400, 472, 549, 604, 607
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PscI	ACATGT	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	391
PspFI	CCCAGC	3 cut(s)	283, 487, 556
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	397
PspPI	GGNCC	3 cut(s)	102, 281, 355
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	4 cut(s)	210, 219, 411, 519
RsaNI	GTAC	4 cut(s)	209, 218, 410, 518
SacII	CCGCGG	1 cut(s)	606
SapI	GCTCTTC	1 cut(s)	568
SatI	GCNGC	8 cut(s)	63, 144, 384, 399, 471, 548, 603, 606
Sau96I	GGNCC	3 cut(s)	102, 281, 355
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	2 cut(s)	393, 540
SduI	GDGCHC	2 cut(s)	124, 563
SetI	ASST	7 cut(s)	100, 305, 385, 397, 406, 493, 574
SfaNI	GCATC	1 cut(s)	236
Sfr303I	CCGCGG	1 cut(s)	606
SgrBI	CCGCGG	1 cut(s)	606
SinI	GGWCC	1 cut(s)	102
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	5 cut(s)	399, 548, 554, 603, 605
SspMI	CTAG	3 cut(s)	365, 441, 585
StyD4I	CCNGG	2 cut(s)	391, 538
TaaI	ACNGT	2 cut(s)	376, 526
TaqI	TCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	258
TatI	WGTACW	1 cut(s)	208
TauI	GCSGC	4 cut(s)	401, 550, 605, 608
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	4 cut(s)	62, 143, 383, 470
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	483, 521
VneI	GTGCAC	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	102
XceI	RCATGY	1 cut(s)	80
XspI	CTAG	3 cut(s)	365, 441, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.