Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001282

Physical Location & Seq

Genomic Coordinates Forward (+)

51753219 .. 51754394

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019415

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTTTTGGTTTCAGGTTTGATAAAGTATGGGCTTTTAAAAGTTTTCAAGTTCGGGAAAGACGTACACGACGTTACGGAAGTCCCCGAAAAAGTTTACGAAACTTGCAGCTTCATCAACGATGTGATCAACGCCATCAAAACCAGCCCGGCCAACATCACTCTCAACTCCGCCGACATGCACTACTACATCTCTACTTCGGGCAACAACTGCCAGACCGGCCAGAAGTTCGCCATCACTGTCTCAGCAGCATCCAGCACATCACCCGGATCCTCCCCTTCTGCACCATCTACATCTACCACAACTAACACCGTGCCGACCGGGGTGCTGCCGAGCTCTTCATCCCCTGTTGCTGGGGCTGGTTTCGTTTTGTGCTCGTTGTCCCTTGTAGTGGGATTGTTCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

136

Amino Acids

13.94

Weight (kDa)

6.69

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	15 - 75	1.4e-10	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20230
fragaria_vesca	FvH4_6g29770 FvH4_6g29800 FvH4_6g29800
malus_domestica	MD17G1210900.v1.1 MD17G1211000.v1.1 MD17G1211100.v1.1 MD17G1211200.v1.1 MD17G1211300.v1.1
prunus_persica	Prupe.3G086400_v2.0.a1 Prupe.3G086500_v2.0.a1 Prupe.3G112300_v2.0.a1 Prupe.7G246300_v2.0.a1
pyrus_communis	pycom17g21600 pycom17g21610
rosa_chinensis	RchiOBHm_Chr2g0135581 RchiOBHm_Chr2g0135591 RchiOBHm_Chr2g0135601
rosa_laevigata	RLG00000019415 RLG00000019417 RLG00000019468 RLG00000019470 RLG00000019471 RLG00000019472
rosa_multiflora	Rmu_sc0002398.1_g000005 Rmu_sc0002398.1_g000011 Rmu_sc0002792.1_g000051 Rmu_sc0006464.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109040 Rroxscaffold_2G00109060 Rroxscaffold_2G00109140 Rroxscaffold_2G00109150 Rroxscaffold_2G00109160 Rroxscaffold_4G00301440
rosa_rugosa	Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325600 Rorug02G0325800
rosa_samantha	Rh1BG222100 Rh1BG222500 Rh1DG248800 Rh1DG249300 Rh2AG376500 Rh2BG382500 Rh2BG382700 Rh2BG382900 Rh2CG361400 Rh2CG361600 Rh2CG361800 Rh2CG362200
rosa_wichuraiana	Rw0G018650 Rw0G018660 Rw2G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	2 cut(s)	264, 277
AcoI	YGGCCR	2 cut(s)	150, 220
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	353, 391
AgsI	TTSAA	1 cut(s)	49
AluBI	AGCT	2 cut(s)	111, 336
AluI	AGCT	2 cut(s)	111, 336
Alw21I	GWGCWC	2 cut(s)	338, 377
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	2 cut(s)	264, 277
AoxI	GGCC	2 cut(s)	150, 220
ApeKI	GCWGC	3 cut(s)	108, 248, 328
AsuC2I	CCSGG	3 cut(s)	149, 267, 322
AsuHPI	GGTGA	1 cut(s)	255
BamHI	GGATCC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	2 cut(s)	338, 377
BbvI	GCAGC	3 cut(s)	120, 260, 315
BccI	CCATC	3 cut(s)	143, 242, 295
BcgI	CGANNNNNNTGC	2 cut(s)	307, 341
BclI	TGATCA	1 cut(s)	126
BcnI	CCSGG	3 cut(s)	149, 267, 322
BcoDI	GTCTC	1 cut(s)	247
BglI	GCCNNNNNGGC	1 cut(s)	219
BisI	GCNGC	3 cut(s)	109, 249, 329
BlsI	GCNGC	3 cut(s)	110, 250, 330
Bme1390I	CCNGG	3 cut(s)	149, 267, 322
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	3 cut(s)	149, 267, 322
BmsI	GCATC	1 cut(s)	260
BpuMI	CCSGG	3 cut(s)	149, 267, 322
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 391
Bse118I	RCCGGY	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	2 cut(s)	251, 341
BseLI	CCNNNNNNNGG	2 cut(s)	353, 391
BseMII	CTCAG	1 cut(s)	258
BseXI	GCAGC	3 cut(s)	120, 260, 315
BseYI	CCCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	152, 222
BsiEI	CGRYCG	1 cut(s)	321
BsiHKAI	GWGCWC	2 cut(s)	338, 377
BsiSI	CCGG	4 cut(s)	149, 219, 267, 321
BslFI	GGGAC	2 cut(s)	68, 367
BslI	CCNNNNNNNGG	2 cut(s)	353, 391
BsmAI	GTCTC	1 cut(s)	247
BsmFI	GGGAC	2 cut(s)	68, 367
BsnI	GGCC	2 cut(s)	152, 222
Bsp1286I	GDGCHC	2 cut(s)	338, 377
Bsp143I	GATC	2 cut(s)	126, 269
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	2 cut(s)	152, 222
BspCNI	CTCAG	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	2 cut(s)	264, 277
BspQI	GCTCTTC	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	2 cut(s)	126, 269
Bst4CI	ACNGT	2 cut(s)	241, 313
Bst6I	CTCTTC	1 cut(s)	343
BstAPI	GCANNNNNTGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	251, 341
BstKTI	GATC	2 cut(s)	129, 272
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	2 cut(s)	126, 269
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 219
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	3 cut(s)	147, 265, 320
BstV1I	GCAGC	3 cut(s)	120, 260, 315
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	152, 222
BtsCI	GGATG	2 cut(s)	251, 341
BtsIMutI	CAGTG	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	7 cut(s)	34, 111, 147, 152, 222, 336, 359
CviKI_1	RGCY	7 cut(s)	34, 111, 147, 152, 222, 336, 359
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	2 cut(s)	128, 271
DpnII	GATC	2 cut(s)	126, 269
DraI	TTTAAA	1 cut(s)	39
EaeI	YGGCCR	2 cut(s)	150, 220
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
EciI	GGCGGA	1 cut(s)	160
Ecl136II	GAGCTC	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	338
Eco53kI	GAGCTC	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	338
FaeI	CATG	1 cut(s)	181
FaiI	YATR	2 cut(s)	30, 179
FaqI	GGGAC	2 cut(s)	68, 367
FatI	CATG	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	109, 249, 329
FokI	GGATG	2 cut(s)	238, 328
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	3 cut(s)	109, 249, 329
GluI	GCNGC	3 cut(s)	109, 249, 329
GsaI	CCCAGC	1 cut(s)	357
HaeIII	GGCC	2 cut(s)	152, 222
HapII	CCGG	4 cut(s)	149, 219, 267, 321
Hin1II	CATG	1 cut(s)	181
HpaII	CCGG	4 cut(s)	149, 219, 267, 321
HphI	GGTGA	1 cut(s)	255
Hpy166II	GTNNAC	2 cut(s)	67, 97
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	2 cut(s)	67, 97
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	2 cut(s)	241, 313
HpyCH4IV	ACGT	2 cut(s)	63, 72
HpyCH4V	TGCA	3 cut(s)	108, 181, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 219
HpyF3I	CTNAG	1 cut(s)	244
HpySE526I	ACGT	2 cut(s)	63, 72
Hsp92II	CATG	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	126, 269
LguI	GCTCTTC	1 cut(s)	343
Lsp1109I	GCAGC	3 cut(s)	120, 260, 315
LweI	GCATC	1 cut(s)	260
MaeII	ACGT	2 cut(s)	63, 72
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	128, 271
MboI	GATC	2 cut(s)	126, 269
MboII	GAAGA	1 cut(s)	330
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	2 cut(s)	338, 377
MnlI	CCTC	1 cut(s)	283
MseI	TTAA	1 cut(s)	38
MspI	CCGG	4 cut(s)	149, 219, 267, 321
MspR9I	CCNGG	3 cut(s)	149, 267, 322
MwoI	GCNNNNNNNGC	2 cut(s)	210, 219
NciI	CCSGG	3 cut(s)	149, 267, 322
NdeII	GATC	2 cut(s)	126, 269
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	1 cut(s)	271
NmeAIII	GCCGAG	1 cut(s)	357
NspI	RCATGY	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 69
PkrI	GCNGC	3 cut(s)	110, 250, 330
Psp124BI	GAGCTC	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	269
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	3 cut(s)	109, 249, 329
Sau3AI	GATC	2 cut(s)	126, 269
ScrFI	CCNGG	3 cut(s)	149, 267, 322
SduI	GDGCHC	2 cut(s)	338, 377
SetI	ASST	5 cut(s)	19, 66, 75, 113, 338
SfaNI	GCATC	1 cut(s)	260
SsiI	CCGC	1 cut(s)	171
SstI	GAGCTC	1 cut(s)	338
StyD4I	CCNGG	3 cut(s)	147, 265, 320
TaaI	ACNGT	2 cut(s)	241, 313
TaiI	ACGT	2 cut(s)	66, 75
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	3 cut(s)	108, 248, 328
TspDTI	ATGAA	2 cut(s)	103, 330
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	244
XceI	RCATGY	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.