RLG00000019468

Cucumber peeling cupredoxin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001282
Physical Location & Seq
Reverse (-)
52363808 .. 52365931
2124 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019468

Sequence Viewer

Length: 336 bp
ATGGGGGGCCAGAAGAAAATGATGGTTGTTTTTGGGTTAGTTGCGGCTGTGTTTTTGCACAATGTTGCAGCGCAGACGGTGCATGTGGTGGGAGGTAGCATAGAATATGCCACTTGGGCTTCTGGTCAGAAGTTCCTAGTCGGTGATGTTTTGATTTTCAACTTCGCGACAGACACACACGACGTAGTGGAAGTACCCAAAGCATCTTTTGACTCATGTAGCTCCGCCAACCCAATCGGTAGCACCAACACCACTGGCCCAACCAACATCACTCTCACCACCGTCGGCGACCACTACTACATCTGTACTTTCGGACGCCACTGCCAGTCCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

112

Amino Acids

11.74

Weight (kDa)

6.14

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 111 5.9e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 167
AciI CCGC 2 cut(s) 44, 225
AcyI GRCGYC 1 cut(s) 316
AfaI GTAC 2 cut(s) 195, 307
AgsI TTSAA 1 cut(s) 160
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
AoxI GGCC 2 cut(s) 7, 256
ApeKI GCWGC 1 cut(s) 68
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 7, 257
AsuHPI GGTGA 2 cut(s) 155, 268
BbvI GCAGC 1 cut(s) 80
BccI CCATC 1 cut(s) 16
BfaI CTAG 2 cut(s) 137, 334
BglI GCCNNNNNGGC 2 cut(s) 116, 330
BisI GCNGC 2 cut(s) 45, 69
BlsI GCNGC 2 cut(s) 46, 70
BmgT120I GGNCC 2 cut(s) 7, 257
BmiI GGNNCC 1 cut(s) 8
BmsI GCATC 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 316
Bse1I ACTGG 2 cut(s) 259, 325
BseNI ACTGG 2 cut(s) 259, 325
BseXI GCAGC 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 2 cut(s) 9, 258
BsiSI CCGG 1 cut(s) 330
BsnI GGCC 2 cut(s) 9, 258
Bsp68I TCGCGA 1 cut(s) 167
BspACI CCGC 2 cut(s) 44, 225
BspANI GGCC 2 cut(s) 9, 258
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 8
BsrI ACTGG 2 cut(s) 259, 325
BssNI GRCGYC 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 79, 283
BstACI GRCGYC 1 cut(s) 316
BstAPI GCANNNNNTGC 1 cut(s) 79
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 73
BstMWI GCNNNNNNNGC 3 cut(s) 79, 116, 330
BstNSI RCATGY 1 cut(s) 86
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 80
BsuRI GGCC 2 cut(s) 9, 258
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 252, 319
BtuMI TCGCGA 1 cut(s) 167
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 7, 257
CseI GACGC 1 cut(s) 324
Csp6I GTAC 2 cut(s) 194, 306
CviAII CATG 2 cut(s) 83, 216
CviJI RGCY 6 cut(s) 9, 47, 119, 222, 258, 333
CviKI_1 RGCY 6 cut(s) 9, 47, 119, 222, 258, 333
CviQI GTAC 2 cut(s) 194, 306
EciI GGCGGA 1 cut(s) 214
FaeI CATG 2 cut(s) 86, 219
FaiI YATR 4 cut(s) 84, 101, 108, 217
FatI CATG 2 cut(s) 82, 215
Fnu4HI GCNGC 2 cut(s) 45, 69
Fsp4HI GCNGC 2 cut(s) 45, 69
FspBI CTAG 2 cut(s) 137, 334
GlaI GCGC 1 cut(s) 72
GluI GCNGC 2 cut(s) 45, 69
HaeIII GGCC 2 cut(s) 9, 258
HapII CCGG 1 cut(s) 330
HgaI GACGC 1 cut(s) 324
HhaI GCGC 1 cut(s) 73
Hin1I GRCGYC 1 cut(s) 316
Hin1II CATG 2 cut(s) 86, 219
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 1 cut(s) 212
HpaII CCGG 1 cut(s) 330
HphI GGTGA 2 cut(s) 155, 268
Hpy188I TCNGA 2 cut(s) 129, 314
Hpy188III TCNNGA 1 cut(s) 166
Hpy99I CGWCG 2 cut(s) 185, 287
HpyCH4III ACNGT 2 cut(s) 79, 283
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 3 cut(s) 58, 68, 82
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 116, 330
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 316
Hsp92II CATG 2 cut(s) 86, 219
HspAI GCGC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 3 cut(s) 23, 108, 240
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 1 cut(s) 212
MaeI CTAG 2 cut(s) 137, 334
MaeII ACGT 1 cut(s) 183
MboII GAAGA 1 cut(s) 25
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 1 cut(s) 86
MspI CCGG 1 cut(s) 330
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 3 cut(s) 79, 116, 330
NlaIII CATG 2 cut(s) 86, 219
NlaIV GGNNCC 1 cut(s) 8
NruI TCGCGA 1 cut(s) 167
NspI RCATGY 1 cut(s) 86
PkrI GCNGC 2 cut(s) 46, 70
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 8
PspPI GGNCC 2 cut(s) 7, 257
RruI TCGCGA 1 cut(s) 167
RsaI GTAC 2 cut(s) 195, 307
RsaNI GTAC 2 cut(s) 194, 306
SatI GCNGC 2 cut(s) 45, 69
Sau96I GGNCC 2 cut(s) 7, 257
SchI GAGTC 1 cut(s) 206
SetI ASST 3 cut(s) 97, 186, 224
SfaNI GCATC 1 cut(s) 212
SgeI CNNG 9 cut(s) 22, 95, 126, 135, 149, 178, 191, 228, 267
SsiI CCGC 2 cut(s) 44, 225
SspMI CTAG 2 cut(s) 137, 334
TaaI ACNGT 2 cut(s) 79, 283
TaiI ACGT 1 cut(s) 186
TatI WGTACW 1 cut(s) 305
TauI GCSGC 1 cut(s) 47
TscAI CASTG 2 cut(s) 259, 326
TseI GCWGC 1 cut(s) 68
TspRI CASTG 2 cut(s) 259, 326
XceI RCATGY 1 cut(s) 86
XspI CTAG 2 cut(s) 137, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.