Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001282

Physical Location & Seq

Genomic Coordinates Forward (+)

25576685 .. 25577519

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1210900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGAGCAAGATGGTGATTGTTTTTGGATTTGTAGTTGCAGTATTTTTGCAGAGTGCGGCAGCGCAGACAGGACATGTGGTGGGAGACAGCATAGGTTGGACCATCCCTCAATCTGGTGCACAAGAGTATGTCACTTGGGCTGCAAGTAACAAGTTCGTAGTTGGTGATACTCTGGTTTTCAACTTCGCCACCAACGCACACGATGTACAAGAAGTACCCAAAGCATCTTTCGACTCATGCAGTTCCGAAAACCCAATTGGCACAGCCATCACAACTGGCCCAGCAAACATCACTCTCACCTCCGCAGGCGACCACTACTACATCTGCACTTATGGCCGCCATTGCCAGTCGGGACAGAAACTAGCCATCACCGTCTCAGCTGCCTCCCCAGGTGCCGCACCTTCTGTGCCGCCACCGCCCTCTACAACTAACACCCCTCCAACTACCCCTTCCCCCACATCAAACGACCCTGCTGCTTGTGAACCTGTCCCGGCTCCATCGCCTTCCATGAGTGGAGTACCCACCGTGAACACCACCCCTGGGTCGCTGCCTCCGTTGGGTTCTTCTTCACATGTTGTTTTAGCTAGCTTCGTTTTATCCTCCTTGGCTCTTGTCGTGGGTTTGTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

212

Amino Acids

21.51

Weight (kDa)

5.06

Isoelectric Point (pI)

59.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	34 - 120	4.6e-25	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20230
fragaria_vesca	FvH4_6g29770 FvH4_6g29800 FvH4_6g29800
malus_domestica	MD17G1210900.v1.1 MD17G1211000.v1.1 MD17G1211100.v1.1 MD17G1211200.v1.1 MD17G1211300.v1.1
prunus_persica	Prupe.3G086400_v2.0.a1 Prupe.3G086500_v2.0.a1 Prupe.3G112300_v2.0.a1 Prupe.7G246300_v2.0.a1
pyrus_communis	pycom17g21600 pycom17g21610
rosa_chinensis	RchiOBHm_Chr2g0135581 RchiOBHm_Chr2g0135591 RchiOBHm_Chr2g0135601
rosa_laevigata	RLG00000019415 RLG00000019417 RLG00000019468 RLG00000019470 RLG00000019471 RLG00000019472
rosa_multiflora	Rmu_sc0002398.1_g000005 Rmu_sc0002398.1_g000011 Rmu_sc0002792.1_g000051 Rmu_sc0006464.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109040 Rroxscaffold_2G00109060 Rroxscaffold_2G00109140 Rroxscaffold_2G00109150 Rroxscaffold_2G00109160 Rroxscaffold_4G00301440
rosa_rugosa	Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325600 Rorug02G0325800
rosa_samantha	Rh1BG222100 Rh1BG222500 Rh1DG248800 Rh1DG249300 Rh2AG376500 Rh2BG382500 Rh2BG382700 Rh2BG382900 Rh2CG361400 Rh2CG361600 Rh2CG361800 Rh2CG362200
rosa_wichuraiana	Rw0G018650 Rw0G018660 Rw2G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	395
AciI	CCGC	6 cut(s)	59, 306, 340, 399, 413, 419
AcoI	YGGCCR	1 cut(s)	337
AfaI	GTAC	3 cut(s)	210, 219, 522
AfiI	CCNNNNNNNGG	3 cut(s)	116, 543, 560
AflIII	ACRYGT	2 cut(s)	76, 574
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	2 cut(s)	391, 541
AjuI	GAANNNNNNNTTGG	6 cut(s)	215, 243, 247, 275, 436, 468
AluBI	AGCT	3 cut(s)	383, 587, 591
AluI	AGCT	3 cut(s)	383, 587, 591
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	2 cut(s)	81, 382
Alw44I	GTGCAC	1 cut(s)	120
AoxI	GGCC	2 cut(s)	280, 337
ApaLI	GTGCAC	1 cut(s)	120
ApeKI	GCWGC	5 cut(s)	62, 143, 383, 476, 550
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	2 cut(s)	102, 281
AsuC2I	CCSGG	1 cut(s)	494
AsuHPI	GGTGA	4 cut(s)	28, 179, 292, 364
AsuNHI	GCTAGC	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	124
BaeI	ACNNNNGTAYC	2 cut(s)	162, 195
BanI	GGYRCC	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	5 cut(s)	74, 130, 370, 463, 537
BccI	CCATC	5 cut(s)	7, 113, 278, 377, 508
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciT130I	CCWGG	2 cut(s)	393, 543
BcnI	CCSGG	1 cut(s)	494
BcoDI	GTCTC	2 cut(s)	81, 382
BfaI	CTAG	2 cut(s)	365, 588
BisI	GCNGC	9 cut(s)	60, 63, 144, 340, 384, 399, 413, 477, 551
BlsI	GCNGC	9 cut(s)	61, 64, 145, 341, 385, 400, 414, 478, 552
Bme1390I	CCNGG	3 cut(s)	393, 494, 543
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	2 cut(s)	102, 281
BmiI	GGNNCC	2 cut(s)	397, 498
BmrFI	CCNGG	3 cut(s)	393, 494, 543
BmsI	GCATC	1 cut(s)	236
BmtI	GCTAGC	1 cut(s)	591
BpuMI	CCSGG	1 cut(s)	494
BsaJI	CCNNGG	4 cut(s)	391, 541, 542, 606
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 543, 560
Bse1I	ACTGG	2 cut(s)	283, 349
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	2 cut(s)	393, 543
BseDI	CCNNGG	4 cut(s)	391, 541, 542, 606
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	3 cut(s)	116, 543, 560
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	283, 349
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	5 cut(s)	74, 130, 370, 463, 537
BseYI	CCCAGC	1 cut(s)	283
BsgI	GTGCAG	1 cut(s)	313
BshFI	GGCC	2 cut(s)	282, 339
BshNI	GGYRCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	494
BslFI	GGGAC	2 cut(s)	369, 476
BslI	CCNNNNNNNGG	3 cut(s)	116, 543, 560
BsmAI	GTCTC	2 cut(s)	81, 382
BsmBI	CGTCTC	1 cut(s)	382
BsmFI	GGGAC	2 cut(s)	369, 476
BsnI	GGCC	2 cut(s)	282, 339
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	208
BspACI	CCGC	6 cut(s)	59, 306, 340, 399, 413, 419
BspANI	GGCC	2 cut(s)	282, 339
BspCNI	CTCAG	1 cut(s)	392
BspLI	GGNNCC	2 cut(s)	397, 498
BspOI	GCTAGC	1 cut(s)	591
BspT107I	GGYRCC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	343
BsrGI	TGTACA	1 cut(s)	208
BsrI	ACTGG	2 cut(s)	283, 349
BssECI	CCNNGG	4 cut(s)	391, 541, 542, 606
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	393, 543
Bst4CI	ACNGT	2 cut(s)	376, 529
BstAUI	TGTACA	1 cut(s)	208
BstC8I	GCNNGC	2 cut(s)	310, 589
BstDEI	CTNAG	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	67
BstMAI	GTCTC	2 cut(s)	81, 382
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 336, 345, 418
BstNI	CCWGG	2 cut(s)	393, 543
BstNSI	RCATGY	2 cut(s)	80, 578
BstSCI	CCNGG	3 cut(s)	391, 492, 541
BstSLI	GKGCMC	1 cut(s)	124
BstV1I	GCAGC	5 cut(s)	74, 130, 370, 463, 537
BsuRI	GGCC	2 cut(s)	282, 339
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	1 cut(s)	105
Cac8I	GCNNGC	2 cut(s)	310, 589
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	2 cut(s)	102, 281
Csp6I	GTAC	3 cut(s)	209, 218, 521
CviAII	CATG	4 cut(s)	77, 240, 511, 575
CviQI	GTAC	3 cut(s)	209, 218, 521
DdeI	CTNAG	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	606
Eco47I	GGWCC	1 cut(s)	102
EcoRII	CCWGG	2 cut(s)	391, 541
EcoT14I	CCWWGG	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	606
Esp3I	CGTCTC	1 cut(s)	382
FaeI	CATG	4 cut(s)	80, 243, 514, 578
FaiI	YATR	7 cut(s)	78, 95, 132, 241, 336, 512, 576
FaqI	GGGAC	2 cut(s)	369, 476
FatI	CATG	4 cut(s)	76, 239, 510, 574
Fnu4HI	GCNGC	9 cut(s)	60, 63, 144, 340, 384, 399, 413, 477, 551
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	9 cut(s)	60, 63, 144, 340, 384, 399, 413, 477, 551
FspBI	CTAG	2 cut(s)	365, 588
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	9 cut(s)	60, 63, 144, 340, 384, 399, 413, 477, 551
GsaI	CCCAGC	1 cut(s)	287
HaeIII	GGCC	2 cut(s)	282, 339
HapII	CCGG	1 cut(s)	494
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	4 cut(s)	80, 243, 514, 578
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	4 cut(s)	28, 179, 292, 364
Hpy166II	GTNNAC	3 cut(s)	122, 485, 532
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	1 cut(s)	354
Hpy8I	GTNNAC	3 cut(s)	122, 485, 532
HpyAV	CCTTC	3 cut(s)	414, 462, 516
HpyCH4III	ACNGT	2 cut(s)	376, 529
HpyCH4V	TGCA	6 cut(s)	41, 52, 122, 146, 243, 330
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 336, 345, 418
HpyF3I	CTNAG	1 cut(s)	379
Hsp92II	CATG	4 cut(s)	80, 243, 514, 578
HspAI	GCGC	1 cut(s)	65
LmnI	GCTCC	1 cut(s)	502
Lsp1109I	GCAGC	5 cut(s)	74, 130, 370, 463, 537
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	2 cut(s)	365, 588
MaeIII	GTNAC	2 cut(s)	133, 149
MboII	GAAGA	2 cut(s)	558, 561
MfeI	CAATTG	1 cut(s)	258
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	2 cut(s)	80, 467
MnlI	CCTC	7 cut(s)	120, 313, 397, 433, 450, 564, 613
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	3 cut(s)	393, 494, 543
MunI	CAATTG	1 cut(s)	258
MvaI	CCWGG	2 cut(s)	393, 543
MwoI	GCNNNNNNNGC	4 cut(s)	197, 336, 345, 418
NciI	CCSGG	1 cut(s)	494
NheI	GCTAGC	1 cut(s)	587
NlaIII	CATG	4 cut(s)	80, 243, 514, 578
NlaIV	GGNNCC	2 cut(s)	397, 498
NmuCI	GTSAC	1 cut(s)	133
NspI	RCATGY	2 cut(s)	80, 578
PasI	CCCWGGG	1 cut(s)	542
PciI	ACATGT	2 cut(s)	76, 574
PcsI	WCGNNNNNNNCGW	1 cut(s)	554
PkrI	GCNGC	9 cut(s)	61, 64, 145, 341, 385, 400, 414, 478, 552
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PscI	ACATGT	2 cut(s)	76, 574
Psp6I	CCWGG	2 cut(s)	391, 541
PspFI	CCCAGC	1 cut(s)	283
PspGI	CCWGG	2 cut(s)	391, 541
PspN4I	GGNNCC	2 cut(s)	397, 498
PspPI	GGNCC	2 cut(s)	102, 281
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	3 cut(s)	210, 219, 522
RsaNI	GTAC	3 cut(s)	209, 218, 521
SatI	GCNGC	9 cut(s)	60, 63, 144, 340, 384, 399, 413, 477, 551
Sau96I	GGNCC	2 cut(s)	102, 281
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	3 cut(s)	393, 494, 543
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	8 cut(s)	100, 305, 385, 397, 406, 490, 589, 593
SfaNI	GCATC	1 cut(s)	236
SinI	GGWCC	1 cut(s)	102
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	6 cut(s)	59, 306, 340, 399, 413, 419
SspMI	CTAG	2 cut(s)	365, 588
StyD4I	CCNGG	3 cut(s)	391, 492, 541
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	2 cut(s)	376, 529
TaqI	TCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	258
TatI	WGTACW	1 cut(s)	208
TauI	GCSGC	4 cut(s)	62, 342, 401, 415
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	5 cut(s)	62, 143, 383, 476, 550
Tsp45I	GTSAC	1 cut(s)	133
TspGWI	ACGGA	1 cut(s)	546
VneI	GTGCAC	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	102
XceI	RCATGY	2 cut(s)	80, 578
XspI	CTAG	2 cut(s)	365, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.