Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001282

Physical Location & Seq

Genomic Coordinates Reverse (-)

48966635 .. 48968196

Gene Structure 1562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG361800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAAAGCCAGAAGAAGATGATGGTTGTTTTTGGGTTACTTGCGGCTGTGTTTTTGGAGAGTGTGGCCGCGCAGACGGTCCATGTGGTGGGAGGTAGCGTAGGCTGGACCATACCACAGAATGGTGCACAAGAATATGTCACTTGGGCGTCTAGTCAGAAGTTCATAGTTGGTGATGTTCTAAATTTCAACTTCGCGACAAACTCACACGACGTTCTGGAAGTACCCAAAGCATCGTTCGACTCTTGCAGCTCCACCAACCCAATCGGCAACACCATCACCACCGGCCCGGCCAACATCACTCTCACCTCCGCCGGCGAACACTACTACATCTGCACTTTCGGCCACCACTGCCAATCTGGCCAGAAGCTCGCCATCACCGTCTCAGAATCCGCCACGTCACCCGGAGCCTCCCCTTCTGCACCAACTCCTACGTCTCCACCTCCACCCACTACCACTACTACTCCTACCACGCCTTCACCCACATCTGACGCCCCGTGCCCTCCGGTCCAAGCACCAACTCCGTCCACCAAAACCGCGGGGCCCACAGCTAGCTCCACACCAGGATCCACCGCGTTGCCGCCAAGCTCTTCTTCCCCCGCCGTTGGGGCTGGTTTCATTTTGTGCTTGTTCTCCCTTGTTATGGGATTGTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

219

Amino Acids

22.35

Weight (kDa)

5.6

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	36 - 122	2.2e-25	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20230
fragaria_vesca	FvH4_6g29770 FvH4_6g29800 FvH4_6g29800
malus_domestica	MD17G1210900.v1.1 MD17G1211000.v1.1 MD17G1211100.v1.1 MD17G1211200.v1.1 MD17G1211300.v1.1
prunus_persica	Prupe.3G086400_v2.0.a1 Prupe.3G086500_v2.0.a1 Prupe.3G112300_v2.0.a1 Prupe.7G246300_v2.0.a1
pyrus_communis	pycom17g21600 pycom17g21610
rosa_chinensis	RchiOBHm_Chr2g0135581 RchiOBHm_Chr2g0135591 RchiOBHm_Chr2g0135601
rosa_laevigata	RLG00000019415 RLG00000019417 RLG00000019468 RLG00000019470 RLG00000019471 RLG00000019472
rosa_multiflora	Rmu_sc0002398.1_g000005 Rmu_sc0002398.1_g000011 Rmu_sc0002792.1_g000051 Rmu_sc0006464.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109040 Rroxscaffold_2G00109060 Rroxscaffold_2G00109140 Rroxscaffold_2G00109150 Rroxscaffold_2G00109160 Rroxscaffold_4G00301440
rosa_rugosa	Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325600 Rorug02G0325800
rosa_samantha	Rh1BG222100 Rh1BG222500 Rh1DG248800 Rh1DG249300 Rh2AG376500 Rh2BG382500 Rh2BG382700 Rh2BG382900 Rh2CG361400 Rh2CG361600 Rh2CG361800 Rh2CG362200
rosa_wichuraiana	Rw0G018650 Rw0G018660 Rw2G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	88, 122
AccII	CGCG	4 cut(s)	71, 197, 539, 575
AciI	CCGC	9 cut(s)	44, 69, 312, 393, 537, 539, 573, 581, 600
AclWI	GGATC	2 cut(s)	561, 574
AcoI	YGGCCR	4 cut(s)	66, 291, 343, 361
AcsI	RAATTY	1 cut(s)	184
AcyI	GRCGYC	2 cut(s)	149, 492
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	5 cut(s)	88, 122, 605, 606, 643
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	399
AjnI	CCWGG	1 cut(s)	562
AjuI	GAANNNNNNNTTGG	4 cut(s)	221, 253, 577, 609
AluBI	AGCT	5 cut(s)	252, 370, 551, 555, 588
AluI	AGCT	5 cut(s)	252, 370, 551, 555, 588
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	2 cut(s)	388, 441
Alw44I	GTGCAC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	561, 574
AoxI	GGCC	6 cut(s)	66, 286, 291, 343, 361, 542
ApaI	GGGCCC	1 cut(s)	546
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	249
ApoI	RAATTY	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	6 cut(s)	79, 108, 287, 508, 542, 543
AsuC2I	CCSGG	2 cut(s)	290, 405
AsuHPI	GGTGA	6 cut(s)	185, 271, 298, 370, 393, 471
AsuNHI	GCTAGC	1 cut(s)	551
AvaII	GGWCC	3 cut(s)	79, 108, 508
BaeGI	GKGCMC	3 cut(s)	130, 503, 546
BalI	TGGCCA	1 cut(s)	363
BamHI	GGATCC	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	3 cut(s)	16, 284, 383
BceAI	ACGGC	1 cut(s)	587
BciT130I	CCWGG	1 cut(s)	564
BcnI	CCSGG	2 cut(s)	290, 405
BcoDI	GTCTC	2 cut(s)	388, 441
BfaI	CTAG	2 cut(s)	153, 552
BglI	GCCNNNNNGGC	2 cut(s)	360, 608
BisI	GCNGC	4 cut(s)	45, 69, 250, 581
BlsI	GCNGC	4 cut(s)	46, 70, 251, 582
Bme1390I	CCNGG	3 cut(s)	290, 405, 564
Bme18I	GGWCC	3 cut(s)	79, 108, 508
BmgBI	CACGTC	1 cut(s)	399
BmgT120I	GGNCC	6 cut(s)	79, 108, 287, 508, 542, 543
BmiI	GGNNCC	4 cut(s)	409, 543, 544, 568
BmrFI	CCNGG	3 cut(s)	290, 405, 564
BmsI	GCATC	1 cut(s)	242
BmtI	GCTAGC	1 cut(s)	555
BpuMI	CCSGG	2 cut(s)	290, 405
BsaHI	GRCGYC	2 cut(s)	149, 492
BsaJI	CCNNGG	1 cut(s)	537
BsaWI	WCCGGW	1 cut(s)	505
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 448, 478
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 122, 605, 606, 643
Bse118I	RCCGGY	2 cut(s)	284, 314
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	1 cut(s)	537
BseLI	CCNNNNNNNGG	5 cut(s)	88, 122, 605, 606, 643
BseMII	CTCAG	1 cut(s)	399
BseSI	GKGCMC	3 cut(s)	130, 503, 546
BseXI	GCAGC	1 cut(s)	261
BsgI	GTGCAG	2 cut(s)	319, 405
Bsh1236I	CGCG	4 cut(s)	71, 197, 539, 575
BshFI	GGCC	6 cut(s)	68, 288, 293, 345, 363, 544
BsiHKAI	GWGCWC	1 cut(s)	130
BsiSI	CCGG	5 cut(s)	285, 290, 315, 405, 506
BslI	CCNNNNNNNGG	5 cut(s)	88, 122, 605, 606, 643
BsmAI	GTCTC	2 cut(s)	388, 441
BsmBI	CGTCTC	2 cut(s)	388, 441
BsnI	GGCC	6 cut(s)	68, 288, 293, 345, 363, 544
Bsp120I	GGGCCC	1 cut(s)	542
Bsp1286I	GDGCHC	3 cut(s)	130, 503, 546
Bsp143I	GATC	1 cut(s)	566
Bsp68I	TCGCGA	1 cut(s)	197
BspACI	CCGC	9 cut(s)	44, 69, 312, 393, 537, 539, 573, 581, 600
BspANI	GGCC	6 cut(s)	68, 288, 293, 345, 363, 544
BspCNI	CTCAG	1 cut(s)	398
BspFNI	CGCG	4 cut(s)	71, 197, 539, 575
BspLI	GGNNCC	4 cut(s)	409, 543, 544, 568
BspOI	GCTAGC	1 cut(s)	555
BspPI	GGATC	2 cut(s)	561, 574
BspQI	GCTCTTC	1 cut(s)	595
BsrFI	RCCGGY	2 cut(s)	284, 314
BssAI	RCCGGY	2 cut(s)	284, 314
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	1 cut(s)	566
BssNI	GRCGYC	2 cut(s)	149, 492
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	2 cut(s)	79, 382
Bst6I	CTCTTC	1 cut(s)	595
BstACI	GRCGYC	2 cut(s)	149, 492
BstC8I	GCNNGC	3 cut(s)	316, 372, 553
BstDEI	CTNAG	1 cut(s)	385
BstDSI	CCRYGG	1 cut(s)	537
BstFNI	CGCG	4 cut(s)	71, 197, 539, 575
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	569
BstMAI	GTCTC	2 cut(s)	388, 441
BstMBI	GATC	1 cut(s)	566
BstMWI	GCNNNNNNNGC	4 cut(s)	342, 351, 360, 608
BstNI	CCWGG	1 cut(s)	564
BstSCI	CCNGG	3 cut(s)	288, 403, 562
BstSLI	GKGCMC	3 cut(s)	130, 503, 546
BstUI	CGCG	4 cut(s)	71, 197, 539, 575
BstV1I	GCAGC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	566
BsuRI	GGCC	6 cut(s)	68, 288, 293, 345, 363, 544
BtgI	CCRYGG	1 cut(s)	537
BtrI	CACGTC	1 cut(s)	399
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	349
BtuMI	TCGCGA	1 cut(s)	197
Cac8I	GCNNGC	3 cut(s)	316, 372, 553
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	2 cut(s)	284, 314
Cfr13I	GGNCC	6 cut(s)	79, 108, 287, 508, 542, 543
Cfr42I	CCGCGG	1 cut(s)	540
CseI	GACGC	2 cut(s)	138, 500
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	1 cut(s)	83
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	1 cut(s)	385
DpnI	GATC	1 cut(s)	568
DpnII	GATC	1 cut(s)	566
EaeI	YGGCCR	4 cut(s)	66, 291, 343, 361
Eam1104I	CTCTTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	595
EciI	GGCGGA	2 cut(s)	301, 382
Eco24I	GRGCYC	1 cut(s)	546
Eco47I	GGWCC	3 cut(s)	79, 108, 508
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	546
Esp3I	CGTCTC	2 cut(s)	388, 441
FaeI	CATG	1 cut(s)	86
FaiI	YATR	5 cut(s)	84, 113, 138, 167, 644
FalI	AAGNNNNNCTT	2 cut(s)	577, 609
FatI	CATG	1 cut(s)	82
FauI	CCCGC	2 cut(s)	532, 607
Fnu4HI	GCNGC	4 cut(s)	45, 69, 250, 581
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	4 cut(s)	45, 69, 250, 581
FspBI	CTAG	2 cut(s)	153, 552
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	4 cut(s)	45, 69, 250, 581
HaeIII	GGCC	6 cut(s)	68, 288, 293, 345, 363, 544
HapII	CCGG	5 cut(s)	285, 290, 315, 405, 506
HgaI	GACGC	2 cut(s)	138, 500
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	2 cut(s)	149, 492
Hin1II	CATG	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	2 cut(s)	242, 389
HpaII	CCGG	5 cut(s)	285, 290, 315, 405, 506
HphI	GGTGA	6 cut(s)	185, 271, 298, 370, 393, 471
Hpy166II	GTNNAC	2 cut(s)	128, 528
Hpy188I	TCNGA	3 cut(s)	159, 388, 490
Hpy188III	TCNNGA	2 cut(s)	196, 218
Hpy8I	GTNNAC	2 cut(s)	128, 528
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	2 cut(s)	426, 486
HpyCH4III	ACNGT	2 cut(s)	79, 382
HpyCH4IV	ACGT	3 cut(s)	213, 398, 434
HpyCH4V	TGCA	4 cut(s)	128, 249, 336, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	342, 351, 360, 608
HpyF3I	CTNAG	1 cut(s)	385
HpySE526I	ACGT	3 cut(s)	213, 398, 434
Hsp92I	GRCGYC	2 cut(s)	149, 492
Hsp92II	CATG	1 cut(s)	86
HspAI	GCGC	1 cut(s)	71
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
KspI	CCGCGG	1 cut(s)	540
Kzo9I	GATC	1 cut(s)	566
LguI	GCTCTTC	1 cut(s)	595
LmnI	GCTCC	3 cut(s)	257, 407, 560
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	2 cut(s)	153, 552
MaeII	ACGT	3 cut(s)	213, 398, 434
MaeIII	GTNAC	3 cut(s)	36, 139, 399
MalI	GATC	1 cut(s)	568
MboI	GATC	1 cut(s)	566
MboII	GAAGA	4 cut(s)	25, 28, 582, 585
MflI	RGATCY	1 cut(s)	566
MhlI	GDGCHC	3 cut(s)	130, 503, 546
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	1 cut(s)	184
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	5 cut(s)	86, 319, 421, 453, 513
Mox20I	TGGCCA	1 cut(s)	363
MreI	CGCCGGCG	1 cut(s)	314
MroNI	GCCGGC	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	5 cut(s)	285, 290, 315, 405, 506
MspR9I	CCNGG	3 cut(s)	290, 405, 564
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	4 cut(s)	71, 197, 539, 575
MwoI	GCNNNNNNNGC	4 cut(s)	342, 351, 360, 608
NaeI	GCCGGC	1 cut(s)	316
NciI	CCSGG	2 cut(s)	290, 405
NdeII	GATC	1 cut(s)	566
NgoMIV	GCCGGC	1 cut(s)	314
NheI	GCTAGC	1 cut(s)	551
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	4 cut(s)	409, 543, 544, 568
NmuCI	GTSAC	2 cut(s)	139, 399
NruI	TCGCGA	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	595
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PdiI	GCCGGC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	389
PflMI	CCANNNNNTGG	2 cut(s)	88, 122
PkrI	GCNGC	4 cut(s)	46, 70, 251, 582
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	4 cut(s)	409, 543, 544, 568
PspOMI	GGGCCC	1 cut(s)	542
PspPI	GGNCC	6 cut(s)	79, 108, 287, 508, 542, 543
PsuI	RGATCY	1 cut(s)	566
RruI	TCGCGA	1 cut(s)	197
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SacII	CCGCGG	1 cut(s)	540
SapI	GCTCTTC	1 cut(s)	595
SatI	GCNGC	4 cut(s)	45, 69, 250, 581
Sau3AI	GATC	1 cut(s)	566
Sau96I	GGNCC	6 cut(s)	79, 108, 287, 508, 542, 543
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	290, 405, 564
SduI	GDGCHC	3 cut(s)	130, 503, 546
SfaNI	GCATC	1 cut(s)	242
Sfr303I	CCGCGG	1 cut(s)	540
SgrAI	CRCCGGYG	1 cut(s)	314
SgrBI	CCGCGG	1 cut(s)	540
SinI	GGWCC	3 cut(s)	79, 108, 508
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	9 cut(s)	44, 69, 312, 393, 537, 539, 573, 581, 600
SspMI	CTAG	2 cut(s)	153, 552
StyD4I	CCNGG	3 cut(s)	288, 403, 562
TaaI	ACNGT	2 cut(s)	79, 382
TaiI	ACGT	3 cut(s)	216, 401, 437
TaqI	TCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	184
TauI	GCSGC	3 cut(s)	47, 71, 583
TfiI	GAWTC	1 cut(s)	389
TscAI	CASTG	1 cut(s)	356
TseFI	GTSAC	2 cut(s)	139, 399
TseI	GCWGC	1 cut(s)	249
Tsp45I	GTSAC	2 cut(s)	139, 399
TspDTI	ATGAA	2 cut(s)	154, 607
TspGWI	ACGGA	1 cut(s)	513
TspRI	CASTG	1 cut(s)	356
Van91I	CCANNNNNTGG	2 cut(s)	88, 122
VneI	GTGCAC	1 cut(s)	126
VpaK11BI	GGWCC	3 cut(s)	79, 108, 508
XapI	RAATTY	1 cut(s)	184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XspI	CTAG	2 cut(s)	153, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.