Rh1DG248800

Cucumber peeling cupredoxin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001282
Physical Location & Seq
Reverse (-)
46301904 .. 46304285
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG248800.1

Sequence Viewer

Length: 891 bp
ATGGAGAGCCAGAAGAAGATGATTGTTGTTTTTGGGTTAGTTGCTGCTGTGTTTTTACAGTGTGTGGCGGCGGAGACATCGCATGTGGTGGGAGATAGCGTAGGCTGGACCATACCACAGAACGGCGCACAAGAGTATGTCACATGGGCGTCTGGTCAGAAGTTCGTAGTTGGTGATGTTCTGGTTTTCAGCTTCGCGACAAGCACACACGACGTGGTGGAAGTACCCAAAGCATCCTTCGACTCTTGCAGCTCCACCAACCCAATCGGCAGCACCATCACCACCGGCCCGGCCAACATCACTCTCACCTCCTCCGGCGAACACTACTACATCTGTACTTTCGGCCTCCACTGCGAGTCCGGCCAGAAGCTCGCCATCACCGTCTCAGCATCCGCCTCCCCTTCTGCACCATCTCTATCTACCAACCCTGACAACACACACCTCATTTTGTTCAATTGGGGCATTATAACTGATGAGGTGTTGTGTGAAGCAGCTTTGAGACTTCCAGTTTTAGAGGAACTTGACATTTCGATGTGCAAATTCGCCAGTAAAGCTCTACAAGTAGTTGGGCGCTGCTGCCCTCTTTTGAAATCATTCAAATTTAACACCCCGAATGGAAGAAAGTCTTCCAGGCAGTATTATAGCGACGAGGATGCAGTTGCTATATCAGTAACCATGCATGGTTTACTCCTCCTTGAGATCCGTAGGAATGAGCTGACTTGCAATGGCTTGGCGACAATTCTTGATTGTTGTCTTCAACTCGAGATCCTTAATTTGCGCAAGTGTAAAAACCTGAGATATATGAGCACAGATTTGGAAATAAGATGTGTTGAAAGAATTAAGAAGTTGTGGCTCCGCGGCCCGATCATCCCTCTAGTATATCGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

296

Amino Acids

32.45

Weight (kDa)

6.59

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 36 - 122 6.9e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
Acc16I TGCGCA 1 cut(s) 779
AccII CGCG 2 cut(s) 197, 858
AciI CCGC 5 cut(s) 68, 71, 393, 856, 858
AclWI GGATC 2 cut(s) 694, 760
AcoI YGGCCR 2 cut(s) 291, 361
AcsI RAATTY 2 cut(s) 539, 599
AcyI GRCGYC 1 cut(s) 149
AdeI CACNNNGTG 1 cut(s) 214
AfaI GTAC 2 cut(s) 225, 337
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 5 cut(s) 454, 589, 598, 758, 833
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 1 cut(s) 629
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 6 cut(s) 192, 252, 370, 494, 554, 715
AluI AGCT 6 cut(s) 192, 252, 370, 494, 554, 715
Alw21I GWGCWC 1 cut(s) 809
Alw26I GTCTC 3 cut(s) 68, 388, 493
AlwI GGATC 2 cut(s) 694, 760
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 5 cut(s) 286, 291, 343, 361, 859
ApeKI GCWGC 6 cut(s) 44, 249, 270, 491, 573, 576
ApoI RAATTY 2 cut(s) 539, 599
Asp700I GAANNNNTTC 2 cut(s) 593, 625
AspLEI GCGC 3 cut(s) 128, 573, 780
AspS9I GGNCC 3 cut(s) 108, 287, 860
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 4 cut(s) 185, 271, 298, 370
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 1 cut(s) 108
BbsI GAAGAC 2 cut(s) 618, 746
Bbv12I GWGCWC 1 cut(s) 809
BbvI GCAGC 6 cut(s) 31, 261, 282, 503, 560, 563
BccI CCATC 3 cut(s) 284, 383, 418
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 635, 669
BciT130I CCWGG 1 cut(s) 631
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 3 cut(s) 68, 388, 493
BfaI CTAG 1 cut(s) 875
BfoI RGCGCY 1 cut(s) 574
BisI GCNGC 8 cut(s) 45, 69, 250, 271, 492, 574, 577, 859
BlsI GCNGC 8 cut(s) 46, 70, 251, 272, 493, 575, 578, 860
Bme1390I CCNGG 2 cut(s) 290, 631
Bme18I GGWCC 1 cut(s) 108
BmeT110I CYCGRG 1 cut(s) 761
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 3 cut(s) 108, 287, 860
BmiI GGNNCC 1 cut(s) 854
BmrFI CCNGG 2 cut(s) 290, 631
BmsI GCATC 3 cut(s) 242, 398, 643
BpiI GAAGAC 2 cut(s) 618, 746
BpuEI CTTGAG 1 cut(s) 716
BpuMI CCSGG 1 cut(s) 290
BsaHI GRCGYC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 856
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 2 cut(s) 506, 546
Bse3DI GCAATG 1 cut(s) 730
BseBI CCWGG 1 cut(s) 631
BseDI CCNNGG 1 cut(s) 856
BseGI GGATG 4 cut(s) 233, 389, 658, 867
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 730
BseMII CTCAG 2 cut(s) 399, 785
BseNI ACTGG 2 cut(s) 506, 546
BseRI GAGGAG 2 cut(s) 301, 680
BseXI GCAGC 6 cut(s) 31, 261, 282, 503, 560, 563
BsgI GTGCAG 1 cut(s) 390
Bsh1236I CGCG 2 cut(s) 197, 858
BshFI GGCC 5 cut(s) 288, 293, 345, 363, 861
BsiHKAI GWGCWC 1 cut(s) 809
BsiHKCI CYCGRG 1 cut(s) 761
BsiSI CCGG 4 cut(s) 285, 290, 315, 360
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 3 cut(s) 68, 388, 493
BsmBI CGTCTC 1 cut(s) 388
BsnI GGCC 5 cut(s) 288, 293, 345, 363, 861
BsoBI CYCGRG 1 cut(s) 761
Bsp1286I GDGCHC 1 cut(s) 809
Bsp143I GATC 3 cut(s) 699, 765, 864
Bsp68I TCGCGA 1 cut(s) 197
BspACI CCGC 5 cut(s) 68, 71, 393, 856, 858
BspANI GGCC 5 cut(s) 288, 293, 345, 363, 861
BspCNI CTCAG 2 cut(s) 398, 786
BspFNI CGCG 2 cut(s) 197, 858
BspLI GGNNCC 1 cut(s) 854
BspPI GGATC 2 cut(s) 694, 760
BsrDI GCAATG 1 cut(s) 730
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 2 cut(s) 506, 546
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 856
BssMI GATC 3 cut(s) 699, 765, 864
BssNI GRCGYC 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 631
Bst4CI ACNGT 2 cut(s) 60, 382
BstACI GRCGYC 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 385, 794
BstDSI CCRYGG 1 cut(s) 856
BstF5I GGATG 4 cut(s) 233, 389, 658, 867
BstFNI CGCG 2 cut(s) 197, 858
BstH2I RGCGCY 1 cut(s) 574
BstHHI GCGC 3 cut(s) 128, 573, 780
BstKTI GATC 3 cut(s) 702, 768, 867
BstMAI GTCTC 3 cut(s) 68, 388, 493
BstMBI GATC 3 cut(s) 699, 765, 864
BstMWI GCNNNNNNNGC 3 cut(s) 351, 360, 551
BstNI CCWGG 1 cut(s) 631
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 288, 629
BstUI CGCG 2 cut(s) 197, 858
BstV1I GCAGC 6 cut(s) 31, 261, 282, 503, 560, 563
BstV2I GAAGAC 2 cut(s) 618, 746
BstX2I RGATCY 2 cut(s) 699, 765
BstYI RGATCY 2 cut(s) 699, 765
BsuRI GGCC 5 cut(s) 288, 293, 345, 363, 861
BtgI CCRYGG 1 cut(s) 856
BtgZI GCGATG 1 cut(s) 63
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 4 cut(s) 233, 389, 658, 867
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 65, 349
BtuMI TCGCGA 1 cut(s) 197
Cac8I GCNNGC 1 cut(s) 372
CfoI GCGC 3 cut(s) 128, 573, 780
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 3 cut(s) 108, 287, 860
Cfr42I CCGCGG 1 cut(s) 859
CseI GACGC 1 cut(s) 138
Csp6I GTAC 2 cut(s) 224, 336
CviAII CATG 4 cut(s) 83, 144, 676, 680
CviQI GTAC 2 cut(s) 224, 336
DdeI CTNAG 2 cut(s) 385, 794
DpnI GATC 3 cut(s) 701, 767, 866
DpnII GATC 3 cut(s) 699, 765, 864
DraIII CACNNNGTG 1 cut(s) 214
EaeI YGGCCR 2 cut(s) 291, 361
EciI GGCGGA 2 cut(s) 86, 382
Eco47I GGWCC 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 761
EcoRII CCWGG 1 cut(s) 629
EcoT22I ATGCAT 1 cut(s) 681
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 4 cut(s) 86, 147, 679, 683
FalI AAGNNNNNCTT 2 cut(s) 610, 642
FatI CATG 4 cut(s) 82, 143, 675, 679
Fnu4HI GCNGC 8 cut(s) 45, 69, 250, 271, 492, 574, 577, 859
FokI GGATG 4 cut(s) 220, 376, 665, 854
Fsp4HI GCNGC 8 cut(s) 45, 69, 250, 271, 492, 574, 577, 859
FspBI CTAG 1 cut(s) 875
FspI TGCGCA 1 cut(s) 779
GlaI GCGC 3 cut(s) 127, 572, 779
GluI GCNGC 8 cut(s) 45, 69, 250, 271, 492, 574, 577, 859
HaeII RGCGCY 1 cut(s) 574
HaeIII GGCC 5 cut(s) 288, 293, 345, 363, 861
HapII CCGG 4 cut(s) 285, 290, 315, 360
HgaI GACGC 1 cut(s) 138
HhaI GCGC 3 cut(s) 128, 573, 780
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 4 cut(s) 86, 147, 679, 683
Hin6I GCGC 3 cut(s) 126, 571, 778
HinP1I GCGC 3 cut(s) 126, 571, 778
HinfI GANTC 2 cut(s) 242, 356
HpaII CCGG 4 cut(s) 285, 290, 315, 360
HphI GGTGA 4 cut(s) 185, 271, 298, 370
Hpy166II GTNNAC 1 cut(s) 686
Hpy188I TCNGA 2 cut(s) 159, 885
Hpy188III TCNNGA 3 cut(s) 196, 743, 763
Hpy8I GTNNAC 1 cut(s) 686
Hpy99I CGWCG 2 cut(s) 215, 650
HpyAV CCTTC 2 cut(s) 247, 411
HpyCH4III ACNGT 2 cut(s) 60, 382
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 6 cut(s) 249, 407, 537, 656, 679, 723
HpyF10VI GCNNNNNNNGC 3 cut(s) 351, 360, 551
HpyF3I CTNAG 2 cut(s) 385, 794
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 4 cut(s) 86, 147, 679, 683
HspAI GCGC 3 cut(s) 126, 571, 778
KspI CCGCGG 1 cut(s) 859
Kzo9I GATC 3 cut(s) 699, 765, 864
LmnI GCTCC 2 cut(s) 257, 858
Lsp1109I GCAGC 6 cut(s) 31, 261, 282, 503, 560, 563
LweI GCATC 3 cut(s) 242, 398, 643
MaeI CTAG 1 cut(s) 875
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 2 cut(s) 139, 670
MalI GATC 3 cut(s) 701, 767, 866
MboI GATC 3 cut(s) 699, 765, 864
MboII GAAGA 5 cut(s) 25, 28, 618, 630, 746
MfeI CAATTG 1 cut(s) 454
MflI RGATCY 2 cut(s) 699, 765
MhlI GDGCHC 1 cut(s) 809
MluCI AATT 6 cut(s) 454, 539, 599, 738, 772, 837
MlyI GAGTC 2 cut(s) 236, 365
Mph1103I ATGCAT 1 cut(s) 681
MroXI GAANNNNTTC 2 cut(s) 593, 625
MseI TTAA 3 cut(s) 603, 771, 840
MslI CAYNNNNRTG 1 cut(s) 530
MspA1I CMGCKG 1 cut(s) 858
MspI CCGG 4 cut(s) 285, 290, 315, 360
MspR9I CCNGG 2 cut(s) 290, 631
MunI CAATTG 1 cut(s) 454
MvaI CCWGG 1 cut(s) 631
MvnI CGCG 2 cut(s) 197, 858
MwoI GCNNNNNNNGC 3 cut(s) 351, 360, 551
NciI CCSGG 1 cut(s) 290
NdeII GATC 3 cut(s) 699, 765, 864
NlaIII CATG 4 cut(s) 86, 147, 679, 683
NlaIV GGNNCC 1 cut(s) 854
NmuCI GTSAC 1 cut(s) 139
NruI TCGCGA 1 cut(s) 197
NsbI TGCGCA 1 cut(s) 779
NsiI ATGCAT 1 cut(s) 681
NspI RCATGY 1 cut(s) 86
PaeR7I CTCGAG 1 cut(s) 761
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PdmI GAANNNNTTC 2 cut(s) 593, 625
PkrI GCNGC 8 cut(s) 46, 70, 251, 272, 493, 575, 578, 860
PleI GAGTC 2 cut(s) 236, 364
PpsI GAGTC 2 cut(s) 236, 364
PsiI TTATAA 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 629
PspGI CCWGG 1 cut(s) 629
PspN4I GGNNCC 1 cut(s) 854
PspPI GGNCC 3 cut(s) 108, 287, 860
PsuI RGATCY 2 cut(s) 699, 765
RruI TCGCGA 1 cut(s) 197
RsaI GTAC 2 cut(s) 225, 337
RsaNI GTAC 2 cut(s) 224, 336
RseI CAYNNNNRTG 1 cut(s) 530
SacII CCGCGG 1 cut(s) 859
SaqAI TTAA 3 cut(s) 603, 771, 840
SatI GCNGC 8 cut(s) 45, 69, 250, 271, 492, 574, 577, 859
Sau3AI GATC 3 cut(s) 699, 765, 864
Sau96I GGNCC 3 cut(s) 108, 287, 860
SchI GAGTC 2 cut(s) 236, 365
ScrFI CCNGG 2 cut(s) 290, 631
SduI GDGCHC 1 cut(s) 809
SfaNI GCATC 3 cut(s) 242, 398, 643
Sfr274I CTCGAG 1 cut(s) 761
Sfr303I CCGCGG 1 cut(s) 859
SgrBI CCGCGG 1 cut(s) 859
SinI GGWCC 1 cut(s) 108
SlaI CTCGAG 1 cut(s) 761
SmiMI CAYNNNNRTG 1 cut(s) 530
SmlI CTYRAG 2 cut(s) 695, 761
SmoI CTYRAG 2 cut(s) 695, 761
Sse9I AATT 6 cut(s) 454, 539, 599, 738, 772, 837
SsiI CCGC 5 cut(s) 68, 71, 393, 856, 858
SspMI CTAG 1 cut(s) 875
StyD4I CCNGG 2 cut(s) 288, 629
TaaI ACNGT 2 cut(s) 60, 382
TaiI ACGT 1 cut(s) 216
TaqI TCGA 3 cut(s) 240, 530, 762
TasI AATT 6 cut(s) 454, 539, 599, 738, 772, 837
TatI WGTACW 1 cut(s) 335
TauI GCSGC 2 cut(s) 71, 861
Tru1I TTAA 3 cut(s) 603, 771, 840
Tru9I TTAA 3 cut(s) 603, 771, 840
TscAI CASTG 2 cut(s) 65, 356
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 6 cut(s) 44, 249, 270, 491, 573, 576
Tsp45I GTSAC 1 cut(s) 139
TspGWI ACGGA 1 cut(s) 692
TspRI CASTG 2 cut(s) 65, 356
VpaK11BI GGWCC 1 cut(s) 108
XapI RAATTY 2 cut(s) 539, 599
XceI RCATGY 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 761
XmnI GAANNNNTTC 2 cut(s) 593, 625
XspI CTAG 1 cut(s) 875
Zsp2I ATGCAT 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.