Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001282

Physical Location & Seq

Genomic Coordinates Reverse (-)

54190361 .. 54191800

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG382700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAAAGCCAGAAGAAGATGATGGTTGTTTTTGGGTTACTTGCGGCTGTGTTTTTGGAGAGTGTGGCCGCGCAGACGGCCCATGTGGTGGGAGGTAGCGTTGGCTGGACCATACCACAGAATGGTGCACAAGAGTATGTCACTTGGGCGTCTGGTCAGAAGTTCATAGTTGGTGATGTTCTAATCTTCAACTTCGCGACAGACGCACACGACGTAGTGCAAGTACCCAAAGCATCGTTCGACTCATGCAGCTCCGCCAACCCAATCGGCAGTACCATCACCACGGGCCCGGCCAACATCACTCTCACATCTGCCGGCGACCACTACTACATCTGCACTTTCGGCAGCCACTGCCAGTCCGGCCAGAAGCTCGCCATCACCGTCTCAGCATCCGCCACGTCACCCGGAGCCTCCCCTTCTGCACCAACTCCTATGTCTCCACCTCCACCCACTACCACTACTACTCCTACCACGCCTTCACCCTCATCTGACGCCCCTTGCCCTCCGGTCCAAGCACCATCTCCGTCCACCAAAACCACGGGGCCCACAGCTAGCACCACACCAGGATCCACCGTGTTGCCGCCGAGCTCATCTTCCCCTGCCGTTGGGGCTGGTTTCGTTTTGTGCTTGTTGTCTCTTGTTGTGGGATTGTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

219

Amino Acids

22.07

Weight (kDa)

5.65

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	36 - 122	1.1e-25	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20230
fragaria_vesca	FvH4_6g29770 FvH4_6g29800 FvH4_6g29800
malus_domestica	MD17G1210900.v1.1 MD17G1211000.v1.1 MD17G1211100.v1.1 MD17G1211200.v1.1 MD17G1211300.v1.1
prunus_persica	Prupe.3G086400_v2.0.a1 Prupe.3G086500_v2.0.a1 Prupe.3G112300_v2.0.a1 Prupe.7G246300_v2.0.a1
pyrus_communis	pycom17g21600 pycom17g21610
rosa_chinensis	RchiOBHm_Chr2g0135581 RchiOBHm_Chr2g0135591 RchiOBHm_Chr2g0135601
rosa_laevigata	RLG00000019415 RLG00000019417 RLG00000019468 RLG00000019470 RLG00000019471 RLG00000019472
rosa_multiflora	Rmu_sc0002398.1_g000005 Rmu_sc0002398.1_g000011 Rmu_sc0002792.1_g000051 Rmu_sc0006464.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109040 Rroxscaffold_2G00109060 Rroxscaffold_2G00109140 Rroxscaffold_2G00109150 Rroxscaffold_2G00109160 Rroxscaffold_4G00301440
rosa_rugosa	Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325600 Rorug02G0325800
rosa_samantha	Rh1BG222100 Rh1BG222500 Rh1DG248800 Rh1DG249300 Rh2AG376500 Rh2BG382500 Rh2BG382700 Rh2BG382900 Rh2CG361400 Rh2CG361600 Rh2CG361800 Rh2CG362200
rosa_wichuraiana	Rw0G018650 Rw0G018660 Rw2G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	88, 122
AccII	CGCG	2 cut(s)	71, 197
AciI	CCGC	5 cut(s)	44, 69, 255, 393, 581
AclWI	GGATC	2 cut(s)	561, 574
AcoI	YGGCCR	3 cut(s)	66, 291, 361
AcyI	GRCGYC	2 cut(s)	149, 492
AfaI	GTAC	2 cut(s)	225, 274
AfiI	CCNNNNNNNGG	3 cut(s)	88, 122, 605
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	399
AjnI	CCWGG	1 cut(s)	562
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	4 cut(s)	252, 370, 551, 588
AluI	AGCT	4 cut(s)	252, 370, 551, 588
Alw21I	GWGCWC	2 cut(s)	130, 590
Alw26I	GTCTC	3 cut(s)	388, 441, 639
Alw44I	GTGCAC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	561, 574
AlwNI	CAGNNNCTG	1 cut(s)	351
AoxI	GGCC	6 cut(s)	66, 78, 286, 291, 361, 542
ApaI	GGGCCC	2 cut(s)	290, 546
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	249, 345
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	7 cut(s)	79, 108, 286, 287, 508, 542, 543
AsuC2I	CCSGG	2 cut(s)	290, 405
AsuHPI	GGTGA	5 cut(s)	185, 271, 370, 393, 471
AsuNHI	GCTAGC	1 cut(s)	551
AvaII	GGWCC	2 cut(s)	108, 508
BaeGI	GKGCMC	3 cut(s)	130, 290, 546
BamHI	GGATCC	1 cut(s)	566
BanII	GRGCYC	3 cut(s)	290, 546, 590
Bbv12I	GWGCWC	2 cut(s)	130, 590
BbvI	GCAGC	2 cut(s)	261, 357
BccI	CCATC	4 cut(s)	16, 284, 383, 526
BceAI	ACGGC	2 cut(s)	93, 587
BciT130I	CCWGG	1 cut(s)	564
BcnI	CCSGG	2 cut(s)	290, 405
BcoDI	GTCTC	3 cut(s)	388, 441, 639
BfaI	CTAG	1 cut(s)	552
BglI	GCCNNNNNGGC	2 cut(s)	360, 608
BisI	GCNGC	5 cut(s)	45, 69, 250, 346, 581
BlsI	GCNGC	5 cut(s)	46, 70, 251, 347, 582
Bme1390I	CCNGG	3 cut(s)	290, 405, 564
Bme18I	GGWCC	2 cut(s)	108, 508
BmgBI	CACGTC	1 cut(s)	399
BmgT120I	GGNCC	7 cut(s)	79, 108, 286, 287, 508, 542, 543
BmiI	GGNNCC	5 cut(s)	288, 409, 543, 544, 568
BmrFI	CCNGG	3 cut(s)	290, 405, 564
BmsI	GCATC	2 cut(s)	242, 398
BmtI	GCTAGC	1 cut(s)	555
BpuMI	CCSGG	2 cut(s)	290, 405
BsaHI	GRCGYC	2 cut(s)	149, 492
BsaJI	CCNNGG	2 cut(s)	282, 537
BsaWI	WCCGGW	1 cut(s)	505
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 448, 478
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 122, 605
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	2 cut(s)	282, 537
BseGI	GGATG	1 cut(s)	389
BseLI	CCNNNNNNNGG	3 cut(s)	88, 122, 605
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	355
BseSI	GKGCMC	3 cut(s)	130, 290, 546
BseXI	GCAGC	2 cut(s)	261, 357
BsgI	GTGCAG	2 cut(s)	319, 405
Bsh1236I	CGCG	2 cut(s)	71, 197
BshFI	GGCC	6 cut(s)	68, 80, 288, 293, 363, 544
BsiHKAI	GWGCWC	2 cut(s)	130, 590
BsiSI	CCGG	5 cut(s)	290, 315, 360, 405, 506
BslI	CCNNNNNNNGG	3 cut(s)	88, 122, 605
BsmAI	GTCTC	3 cut(s)	388, 441, 639
BsmBI	CGTCTC	1 cut(s)	388
BsnI	GGCC	6 cut(s)	68, 80, 288, 293, 363, 544
Bsp120I	GGGCCC	2 cut(s)	286, 542
Bsp1286I	GDGCHC	4 cut(s)	130, 290, 546, 590
Bsp143I	GATC	1 cut(s)	566
Bsp68I	TCGCGA	1 cut(s)	197
BspACI	CCGC	5 cut(s)	44, 69, 255, 393, 581
BspANI	GGCC	6 cut(s)	68, 80, 288, 293, 363, 544
BspCNI	CTCAG	1 cut(s)	398
BspFNI	CGCG	2 cut(s)	71, 197
BspLI	GGNNCC	5 cut(s)	288, 409, 543, 544, 568
BspOI	GCTAGC	1 cut(s)	555
BspPI	GGATC	2 cut(s)	561, 574
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	282, 537
BssMI	GATC	1 cut(s)	566
BssNI	GRCGYC	2 cut(s)	149, 492
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	2 cut(s)	382, 574
BstACI	GRCGYC	2 cut(s)	149, 492
BstAPI	GCANNNNNTGC	1 cut(s)	351
BstC8I	GCNNGC	3 cut(s)	316, 372, 553
BstDEI	CTNAG	1 cut(s)	385
BstDSI	CCRYGG	2 cut(s)	282, 537
BstF5I	GGATG	1 cut(s)	389
BstFNI	CGCG	2 cut(s)	71, 197
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	569
BstMAI	GTCTC	3 cut(s)	388, 441, 639
BstMBI	GATC	1 cut(s)	566
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 203, 342, 351, 360, 608
BstNI	CCWGG	1 cut(s)	564
BstSCI	CCNGG	3 cut(s)	288, 403, 562
BstSLI	GKGCMC	3 cut(s)	130, 290, 546
BstUI	CGCG	2 cut(s)	71, 197
BstV1I	GCAGC	2 cut(s)	261, 357
BstX2I	RGATCY	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	566
BsuRI	GGCC	6 cut(s)	68, 80, 288, 293, 363, 544
BtgI	CCRYGG	2 cut(s)	282, 537
BtrI	CACGTC	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	389
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	349
BtuMI	TCGCGA	1 cut(s)	197
Cac8I	GCNNGC	3 cut(s)	316, 372, 553
CaiI	CAGNNNCTG	1 cut(s)	351
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	7 cut(s)	79, 108, 286, 287, 508, 542, 543
CseI	GACGC	3 cut(s)	138, 212, 500
Csp6I	GTAC	2 cut(s)	224, 273
CviAII	CATG	2 cut(s)	83, 246
CviQI	GTAC	2 cut(s)	224, 273
DdeI	CTNAG	1 cut(s)	385
DpnI	GATC	1 cut(s)	568
DpnII	GATC	1 cut(s)	566
EaeI	YGGCCR	3 cut(s)	66, 291, 361
EciI	GGCGGA	2 cut(s)	244, 382
Ecl136II	GAGCTC	1 cut(s)	588
Eco24I	GRGCYC	3 cut(s)	290, 546, 590
Eco47I	GGWCC	2 cut(s)	108, 508
Eco53kI	GAGCTC	1 cut(s)	588
EcoICRI	GAGCTC	1 cut(s)	588
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	562
EcoT38I	GRGCYC	3 cut(s)	290, 546, 590
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	2 cut(s)	86, 249
FaiI	YATR	6 cut(s)	84, 113, 138, 167, 247, 434
FatI	CATG	2 cut(s)	82, 245
Fnu4HI	GCNGC	5 cut(s)	45, 69, 250, 346, 581
FokI	GGATG	1 cut(s)	376
FriOI	GRGCYC	3 cut(s)	290, 546, 590
Fsp4HI	GCNGC	5 cut(s)	45, 69, 250, 346, 581
FspBI	CTAG	1 cut(s)	552
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	5 cut(s)	45, 69, 250, 346, 581
HaeIII	GGCC	6 cut(s)	68, 80, 288, 293, 363, 544
HapII	CCGG	5 cut(s)	290, 315, 360, 405, 506
HgaI	GACGC	3 cut(s)	138, 212, 500
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	2 cut(s)	149, 492
Hin1II	CATG	2 cut(s)	86, 249
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	5 cut(s)	290, 315, 360, 405, 506
HphI	GGTGA	5 cut(s)	185, 271, 370, 393, 471
Hpy166II	GTNNAC	2 cut(s)	128, 528
Hpy188I	TCNGA	2 cut(s)	159, 490
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	2 cut(s)	128, 528
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	2 cut(s)	426, 486
HpyCH4III	ACNGT	2 cut(s)	382, 574
HpyCH4IV	ACGT	2 cut(s)	213, 398
HpyCH4V	TGCA	5 cut(s)	128, 220, 249, 336, 422
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 203, 342, 351, 360, 608
HpyF3I	CTNAG	1 cut(s)	385
HpySE526I	ACGT	2 cut(s)	213, 398
Hsp92I	GRCGYC	2 cut(s)	149, 492
Hsp92II	CATG	2 cut(s)	86, 249
HspAI	GCGC	1 cut(s)	71
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	566
LmnI	GCTCC	2 cut(s)	257, 407
Lsp1109I	GCAGC	2 cut(s)	261, 357
LweI	GCATC	2 cut(s)	242, 398
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	2 cut(s)	213, 398
MaeIII	GTNAC	3 cut(s)	36, 139, 399
MalI	GATC	1 cut(s)	568
MboI	GATC	1 cut(s)	566
MboII	GAAGA	4 cut(s)	25, 28, 178, 585
MflI	RGATCY	1 cut(s)	566
MhlI	GDGCHC	4 cut(s)	130, 290, 546, 590
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	5 cut(s)	86, 421, 453, 493, 513
MroNI	GCCGGC	1 cut(s)	314
MspI	CCGG	5 cut(s)	290, 315, 360, 405, 506
MspR9I	CCNGG	3 cut(s)	290, 405, 564
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	2 cut(s)	71, 197
MwoI	GCNNNNNNNGC	6 cut(s)	77, 203, 342, 351, 360, 608
NaeI	GCCGGC	1 cut(s)	316
NciI	CCSGG	2 cut(s)	290, 405
NdeII	GATC	1 cut(s)	566
NgoMIV	GCCGGC	1 cut(s)	314
NheI	GCTAGC	1 cut(s)	551
NlaIII	CATG	2 cut(s)	86, 249
NlaIV	GGNNCC	5 cut(s)	288, 409, 543, 544, 568
NmeAIII	GCCGAG	1 cut(s)	609
NmuCI	GTSAC	2 cut(s)	139, 399
NruI	TCGCGA	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 378
PdiI	GCCGGC	1 cut(s)	316
PflMI	CCANNNNNTGG	2 cut(s)	88, 122
PkrI	GCNGC	5 cut(s)	46, 70, 251, 347, 582
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	590
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	5 cut(s)	288, 409, 543, 544, 568
PspOMI	GGGCCC	2 cut(s)	286, 542
PspPI	GGNCC	7 cut(s)	79, 108, 286, 287, 508, 542, 543
PstNI	CAGNNNCTG	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	566
RruI	TCGCGA	1 cut(s)	197
RsaI	GTAC	2 cut(s)	225, 274
RsaNI	GTAC	2 cut(s)	224, 273
SacI	GAGCTC	1 cut(s)	590
SatI	GCNGC	5 cut(s)	45, 69, 250, 346, 581
Sau3AI	GATC	1 cut(s)	566
Sau96I	GGNCC	7 cut(s)	79, 108, 286, 287, 508, 542, 543
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	290, 405, 564
SduI	GDGCHC	4 cut(s)	130, 290, 546, 590
SetI	ASST	8 cut(s)	97, 216, 254, 372, 401, 445, 553, 590
SfaNI	GCATC	2 cut(s)	242, 398
SinI	GGWCC	2 cut(s)	108, 508
SsiI	CCGC	5 cut(s)	44, 69, 255, 393, 581
SspMI	CTAG	1 cut(s)	552
SstI	GAGCTC	1 cut(s)	590
StyD4I	CCNGG	3 cut(s)	288, 403, 562
TaaI	ACNGT	2 cut(s)	382, 574
TaiI	ACGT	2 cut(s)	216, 401
TaqI	TCGA	1 cut(s)	240
TauI	GCSGC	3 cut(s)	47, 71, 583
TscAI	CASTG	1 cut(s)	356
TseFI	GTSAC	2 cut(s)	139, 399
TseI	GCWGC	2 cut(s)	249, 345
Tsp45I	GTSAC	2 cut(s)	139, 399
TspDTI	ATGAA	1 cut(s)	154
TspGWI	ACGGA	1 cut(s)	513
TspRI	CASTG	1 cut(s)	356
Van91I	CCANNNNNTGG	2 cut(s)	88, 122
VneI	GTGCAC	1 cut(s)	126
VpaK11BI	GGWCC	2 cut(s)	108, 508
XspI	CTAG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.