Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00839

Orthogroup ID

OG0001282

Physical Location & Seq

Genomic Coordinates Forward (+)

81277 .. 81993

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAGAGCCAGAAGAAGATGATGGTTGTTTTTGGGTTAGTTGCGGCTGTGTTTTTACAGTGTGTGGCGGCACAGACGACCCATGTGGTGGGAGATAGCGTAGGCTGGATCATACCACCGAACGGTGCACAACAGTATGTCACATGGGCGTCTGGTCAGAAGTTCGTAGTTGGTGATTTTCTGATTTTCAACTTCACGACAAACTCACACGACGTTCTGGAAGTACCCAAAGCATCGTTCGACTCTTGCAGCTCCACCAACCCAATTGGCAACATCATCACCACCGGCCCGGCCAACATCACTCTCACCTCCTCCGGCGAACACTACTACATCTGCACTTTCGGCGCCACTGCCACATCCGCCACGTCACCCGGATCCTCCCCTTCTGCACCATCTCCATCTACCACAGCTGGCACCACGCCGGGGGTGACCGCGGTGCCGCCAAGCTCTTCATCCCCTGCTGTTGGGGCTGGTTTCGTTTTGTGCTCGTTGTCCCTTGTAATGGGATTGTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

172

Amino Acids

17.61

Weight (kDa)

5.33

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	41 - 114	1.8e-21	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20230
fragaria_vesca	FvH4_6g29770 FvH4_6g29800 FvH4_6g29800
malus_domestica	MD17G1210900.v1.1 MD17G1211000.v1.1 MD17G1211100.v1.1 MD17G1211200.v1.1 MD17G1211300.v1.1
prunus_persica	Prupe.3G086400_v2.0.a1 Prupe.3G086500_v2.0.a1 Prupe.3G112300_v2.0.a1 Prupe.7G246300_v2.0.a1
pyrus_communis	pycom17g21600 pycom17g21610
rosa_chinensis	RchiOBHm_Chr2g0135581 RchiOBHm_Chr2g0135591 RchiOBHm_Chr2g0135601
rosa_laevigata	RLG00000019415 RLG00000019417 RLG00000019468 RLG00000019470 RLG00000019471 RLG00000019472
rosa_multiflora	Rmu_sc0002398.1_g000005 Rmu_sc0002398.1_g000011 Rmu_sc0002792.1_g000051 Rmu_sc0006464.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109040 Rroxscaffold_2G00109060 Rroxscaffold_2G00109140 Rroxscaffold_2G00109150 Rroxscaffold_2G00109160 Rroxscaffold_4G00301440
rosa_rugosa	Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325400 Rorug02G0325600 Rorug02G0325800
rosa_samantha	Rh1BG222100 Rh1BG222500 Rh1DG248800 Rh1DG249300 Rh2AG376500 Rh2BG382500 Rh2BG382700 Rh2BG382900 Rh2CG361400 Rh2CG361600 Rh2CG361800 Rh2CG362200
rosa_wichuraiana	Rw0G018650 Rw0G018660 Rw2G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	344, 413, 436
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccII	CGCG	1 cut(s)	434
AciI	CCGC	6 cut(s)	44, 68, 360, 432, 434, 440
AclWI	GGATC	3 cut(s)	116, 369, 382
AcoI	YGGCCR	1 cut(s)	291
AcyI	GRCGYC	2 cut(s)	149, 345
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	5 cut(s)	88, 122, 423, 464, 502
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	366
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	3 cut(s)	252, 410, 447
AluI	AGCT	3 cut(s)	252, 410, 447
Alw21I	GWGCWC	2 cut(s)	130, 488
Alw44I	GTGCAC	1 cut(s)	126
AlwI	GGATC	3 cut(s)	116, 369, 382
AoxI	GGCC	2 cut(s)	286, 291
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	249
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	3 cut(s)	290, 372, 423
AsuHPI	GGTGA	5 cut(s)	185, 271, 298, 360, 439
BaeGI	GKGCMC	1 cut(s)	130
BamHI	GGATCC	1 cut(s)	374
BanI	GGYRCC	3 cut(s)	344, 413, 436
Bbv12I	GWGCWC	2 cut(s)	130, 488
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	3 cut(s)	16, 400, 406
BcnI	CCSGG	3 cut(s)	290, 372, 423
BfoI	RGCGCY	1 cut(s)	348
BisI	GCNGC	4 cut(s)	45, 69, 250, 440
BlsI	GCNGC	4 cut(s)	46, 70, 251, 441
Bme1390I	CCNGG	3 cut(s)	290, 372, 423
BmgBI	CACGTC	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	4 cut(s)	346, 376, 415, 438
BmrFI	CCNGG	3 cut(s)	290, 372, 423
BmsI	GCATC	1 cut(s)	242
BpuMI	CCSGG	3 cut(s)	290, 372, 423
BsaHI	GRCGYC	2 cut(s)	149, 345
BsaJI	CCNNGG	2 cut(s)	422, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 122, 423, 464, 502
Bse118I	RCCGGY	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	422, 432
BseGI	GGATG	2 cut(s)	356, 452
BseLI	CCNNNNNNNGG	5 cut(s)	88, 122, 423, 464, 502
BseRI	GAGGAG	1 cut(s)	301
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	261
BsgI	GTGCAG	2 cut(s)	319, 372
Bsh1236I	CGCG	1 cut(s)	434
BshFI	GGCC	2 cut(s)	288, 293
BshNI	GGYRCC	3 cut(s)	344, 413, 436
BsiHKAI	GWGCWC	2 cut(s)	130, 488
BsiSI	CCGG	5 cut(s)	285, 290, 315, 372, 422
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	5 cut(s)	88, 122, 423, 464, 502
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	2 cut(s)	288, 293
Bsp1286I	GDGCHC	2 cut(s)	130, 488
Bsp143I	GATC	2 cut(s)	108, 374
BspACI	CCGC	6 cut(s)	44, 68, 360, 432, 434, 440
BspANI	GGCC	2 cut(s)	288, 293
BspFNI	CGCG	1 cut(s)	434
BspLI	GGNNCC	4 cut(s)	346, 376, 415, 438
BspPI	GGATC	3 cut(s)	116, 369, 382
BspQI	GCTCTTC	1 cut(s)	454
BspT107I	GGYRCC	3 cut(s)	344, 413, 436
BsrFI	RCCGGY	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	422, 432
BssMI	GATC	2 cut(s)	108, 374
BssNI	GRCGYC	2 cut(s)	149, 345
Bst4CI	ACNGT	3 cut(s)	60, 125, 135
Bst6I	CTCTTC	1 cut(s)	454
BstACI	GRCGYC	2 cut(s)	149, 345
BstC8I	GCNNGC	1 cut(s)	412
BstDSI	CCRYGG	1 cut(s)	432
BstEII	GGTNACC	1 cut(s)	427
BstF5I	GGATG	2 cut(s)	356, 452
BstFNI	CGCG	1 cut(s)	434
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	2 cut(s)	111, 377
BstMBI	GATC	2 cut(s)	108, 374
BstMWI	GCNNNNNNNGC	3 cut(s)	342, 359, 467
BstPI	GGTNACC	1 cut(s)	427
BstSCI	CCNGG	3 cut(s)	288, 370, 421
BstSLI	GKGCMC	1 cut(s)	130
BstUI	CGCG	1 cut(s)	434
BstV1I	GCAGC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	288, 293
BtgI	CCRYGG	1 cut(s)	432
BtrI	CACGTC	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	356, 452
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	65, 348
Cac8I	GCNNGC	1 cut(s)	412
CfoI	GCGC	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	287
Cfr42I	CCGCGG	1 cut(s)	435
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	2 cut(s)	83, 144
CviJI	RGCY	9 cut(s)	9, 47, 105, 252, 288, 293, 410, 447, 470
CviKI_1	RGCY	9 cut(s)	9, 47, 105, 252, 288, 293, 410, 447, 470
CviQI	GTAC	1 cut(s)	224
DinI	GGCGCC	1 cut(s)	346
DpnI	GATC	2 cut(s)	110, 376
DpnII	GATC	2 cut(s)	108, 374
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
EciI	GGCGGA	1 cut(s)	349
Eco91I	GGTNACC	1 cut(s)	427
EcoO65I	GGTNACC	1 cut(s)	427
EgeI	GGCGCC	1 cut(s)	346
EheI	GGCGCC	1 cut(s)	346
FaeI	CATG	2 cut(s)	86, 147
FaiI	YATR	4 cut(s)	84, 113, 138, 145
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	2 cut(s)	82, 143
Fnu4HI	GCNGC	4 cut(s)	45, 69, 250, 440
FokI	GGATG	2 cut(s)	343, 439
Fsp4HI	GCNGC	4 cut(s)	45, 69, 250, 440
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	4 cut(s)	45, 69, 250, 440
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	288, 293
HapII	CCGG	5 cut(s)	285, 290, 315, 372, 422
HgaI	GACGC	1 cut(s)	138
HhaI	GCGC	1 cut(s)	347
Hin1I	GRCGYC	2 cut(s)	149, 345
Hin1II	CATG	2 cut(s)	86, 147
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	5 cut(s)	285, 290, 315, 372, 422
HphI	GGTGA	5 cut(s)	185, 271, 298, 360, 439
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	2 cut(s)	159, 183
Hpy188III	TCNNGA	2 cut(s)	196, 218
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	393
HpyCH4III	ACNGT	3 cut(s)	60, 125, 135
HpyCH4IV	ACGT	2 cut(s)	213, 365
HpyCH4V	TGCA	4 cut(s)	128, 249, 336, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	342, 359, 467
HpySE526I	ACGT	2 cut(s)	213, 365
Hsp92I	GRCGYC	2 cut(s)	149, 345
Hsp92II	CATG	2 cut(s)	86, 147
HspAI	GCGC	1 cut(s)	345
KasI	GGCGCC	1 cut(s)	344
KspI	CCGCGG	1 cut(s)	435
Kzo9I	GATC	2 cut(s)	108, 374
LguI	GCTCTTC	1 cut(s)	454
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	1 cut(s)	242
MaeII	ACGT	2 cut(s)	213, 365
MaeIII	GTNAC	3 cut(s)	139, 366, 427
MalI	GATC	2 cut(s)	110, 376
MboI	GATC	2 cut(s)	108, 374
MboII	GAAGA	3 cut(s)	25, 28, 441
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	2 cut(s)	130, 488
MluCI	AATT	1 cut(s)	264
Mly113I	GGCGCC	1 cut(s)	345
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	3 cut(s)	319, 322, 388
MspA1I	CMGCKG	2 cut(s)	410, 434
MspI	CCGG	5 cut(s)	285, 290, 315, 372, 422
MspR9I	CCNGG	3 cut(s)	290, 372, 423
MunI	CAATTG	1 cut(s)	264
MvnI	CGCG	1 cut(s)	434
MwoI	GCNNNNNNNGC	3 cut(s)	342, 359, 467
NarI	GGCGCC	1 cut(s)	345
NciI	CCSGG	3 cut(s)	290, 372, 423
NdeII	GATC	2 cut(s)	108, 374
NlaIII	CATG	2 cut(s)	86, 147
NlaIV	GGNNCC	4 cut(s)	346, 376, 415, 438
NmuCI	GTSAC	3 cut(s)	139, 366, 427
PciSI	GCTCTTC	1 cut(s)	454
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	4 cut(s)	46, 70, 251, 441
PleI	GAGTC	1 cut(s)	236
PluTI	GGCGCC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	236
PspEI	GGTNACC	1 cut(s)	427
PspN4I	GGNNCC	4 cut(s)	346, 376, 415, 438
PspPI	GGNCC	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SacII	CCGCGG	1 cut(s)	435
SapI	GCTCTTC	1 cut(s)	454
SatI	GCNGC	4 cut(s)	45, 69, 250, 440
Sau3AI	GATC	2 cut(s)	108, 374
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	290, 372, 423
SduI	GDGCHC	2 cut(s)	130, 488
SetI	ASST	6 cut(s)	216, 254, 311, 368, 412, 449
SfaNI	GCATC	1 cut(s)	242
SfoI	GGCGCC	1 cut(s)	346
Sfr303I	CCGCGG	1 cut(s)	435
SgrBI	CCGCGG	1 cut(s)	435
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	6 cut(s)	44, 68, 360, 432, 434, 440
SspDI	GGCGCC	1 cut(s)	344
StyD4I	CCNGG	3 cut(s)	288, 370, 421
TaaI	ACNGT	3 cut(s)	60, 125, 135
TaiI	ACGT	2 cut(s)	216, 368
TaqI	TCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	264
TauI	GCSGC	3 cut(s)	47, 71, 442
TscAI	CASTG	2 cut(s)	65, 355
TseFI	GTSAC	3 cut(s)	139, 366, 427
TseI	GCWGC	1 cut(s)	249
Tsp45I	GTSAC	3 cut(s)	139, 366, 427
TspDTI	ATGAA	1 cut(s)	441
TspRI	CASTG	2 cut(s)	65, 355
Van91I	CCANNNNNTGG	1 cut(s)	88
VneI	GTGCAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.