FvH4_1g06750

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001405
Physical Location & Seq
Reverse (-)
3552307 .. 3553215
909 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06750.t1

Sequence Viewer

Length: 909 bp
ATGGCTTCTACAATGTCCAAGAATAAGAGAACCCACAAGGCTGCTGCCGTCAAGGCACTAACCAATGCAGAGGCGTATTTCAAGCTCCAAAAGTTGGACTCTGCAATCAAAGAGGCCACGCAAGCGAAAAACCTCGATCCTAATCTGCCCAACGTCGACAATTTCATCACAGCTTACAAGATTCACAAAGCCATGTCGTTCAAGAAAAACTGGTACGTGGTTCTTGACATCCCTGAATGTAGTCATTTATCAATCATCAAAAAAAGATTTAGGGCATTGGCACTCATGGTGCACCCTGATAAGAATCTCTCTGCAGCTGCTGAAGATGCTTTCAAGCATGTCAAAGATGCCCTGGATTTTCTCTCTGACCCGGTGAGAAAGGAGGATTATGACAAGTCTTTTATGTCGAAAAACAAGGCTTTTGCTGCTGCTGCTGCTGCAGCAAAGATGCCTGAGACTACTGCTGCGGCAAGGAAAGCCGCCGCCGCCGCGGCTGCTGCTGCTATGGCAAGGAAAGCCGCCATGGAAGCTTTTGCTGCAAAGGTGGCCGCGGAGAGGAAAGCCGCCAAGGCTGCTGCAAAGATAAGGAAAGCCGCCGCTGATGCTGCTGCCTTGGAAGCTGAGCTTGCTGCTGCGAAAAGGAAATTAGCAGCCGAGACTGCTGCCGCGTCAAGGAAAGCATCCGAGGCTGCTGCCGCGTCAAGGAAAGCAGCCGAGACTGCTGCCGCGTCAAGGAAAGCAGCTGAGGCTGCCACACCTGCTGCTGCAAAGGAGGCTGCAGCTGCTGCTGCAAGGAGTGCGATTAATGCACGCAAACGACGTGAACCCATTAGTGAACTTGAGTATGCCATACACCTAATAATGAAATACTCACCAAATTACATGGAGCGCAGATTCTCAGTCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

303

Amino Acids

32.23

Weight (kDa)

10.03

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 70 - 131 1.1e-15 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 766
Acc36I ACCTGC 1 cut(s) 766
AccB7I CCANNNNNTGG 1 cut(s) 94
AccI GTMKAC 1 cut(s) 156
AccII CGCG 5 cut(s) 491, 551, 668, 698, 728
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 546
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 5 cut(s) 94, 555, 672, 702, 732
AgsI TTSAA 3 cut(s) 82, 202, 334
AjiI CACGTC 1 cut(s) 821
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 8 cut(s) 85, 173, 317, 530, 620, 625, 743, 782
AluI AGCT 8 cut(s) 85, 173, 317, 530, 620, 625, 743, 782
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 3 cut(s) 449, 650, 710
Alw44I GTGCAC 1 cut(s) 290
AlwI GGATC 1 cut(s) 131
AlwNI CAGNNNCTG 2 cut(s) 320, 785
AoxI GGCC 2 cut(s) 114, 546
ApaLI GTGCAC 1 cut(s) 290
AseI ATTAAT 1 cut(s) 804
AspLEI GCGC 1 cut(s) 891
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 2 cut(s) 385, 864
BaeGI GKGCMC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 294
BbvCI CCTCAGC 1 cut(s) 744
BceAI ACGGC 1 cut(s) 32
BcgI CGANNNNNNTGC 6 cut(s) 644, 674, 678, 704, 708, 738
BciT130I CCWGG 1 cut(s) 353
BcnI CCSGG 1 cut(s) 371
BcoDI GTCTC 3 cut(s) 449, 650, 710
BfmI CTRYAG 3 cut(s) 312, 438, 777
BfuAI ACCTGC 1 cut(s) 766
BglI GCCNNNNNGGC 3 cut(s) 53, 491, 569
BlpI GCTNAGC 1 cut(s) 621
Bme1390I CCNGG 2 cut(s) 353, 371
BmgBI CACGTC 1 cut(s) 821
BmrFI CCNGG 2 cut(s) 353, 371
BmsI GCATC 5 cut(s) 316, 337, 438, 592, 689
Bpu10I CCTNAGC 1 cut(s) 744
Bpu1102I GCTNAGC 1 cut(s) 621
BpuEI CTTGAG 1 cut(s) 860
BpuMI CCSGG 1 cut(s) 371
BsaAI YACGTR 1 cut(s) 217
BsaBI GATNNNNATC 2 cut(s) 141, 303
BsaJI CCNNGG 7 cut(s) 351, 489, 522, 549, 567, 612, 684
Bsc4I CCNNNNNNNGG 5 cut(s) 94, 555, 672, 702, 732
Bse1I ACTGG 1 cut(s) 215
Bse8I GATNNNNATC 2 cut(s) 141, 303
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 7 cut(s) 351, 489, 522, 549, 567, 612, 684
BseGI GGATG 2 cut(s) 228, 680
BseJI GATNNNNATC 2 cut(s) 141, 303
BseLI CCNNNNNNNGG 5 cut(s) 94, 555, 672, 702, 732
BseMII CTCAG 3 cut(s) 444, 612, 735
BseNI ACTGG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 294
Bsh1236I CGCG 5 cut(s) 491, 551, 668, 698, 728
BshFI GGCC 2 cut(s) 116, 548
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 1 cut(s) 371
BslI CCNNNNNNNGG 5 cut(s) 94, 555, 672, 702, 732
BsmAI GTCTC 3 cut(s) 449, 650, 710
BsnI GGCC 2 cut(s) 116, 548
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 1 cut(s) 136
Bsp1720I GCTNAGC 1 cut(s) 621
Bsp19I CCATGG 1 cut(s) 522
BspANI GGCC 2 cut(s) 116, 548
BspCNI CTCAG 3 cut(s) 445, 613, 736
BspFNI CGCG 5 cut(s) 491, 551, 668, 698, 728
BspMAI CTGCAG 3 cut(s) 316, 442, 781
BspMI ACCTGC 1 cut(s) 766
BspPI GGATC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 7 cut(s) 351, 489, 522, 549, 567, 612, 684
BssMI GATC 1 cut(s) 136
BssT1I CCWWGG 3 cut(s) 522, 567, 612
Bst2UI CCWGG 1 cut(s) 353
BstAPI GCANNNNNTGC 2 cut(s) 785, 797
BstBAI YACGTR 1 cut(s) 217
BstC8I GCNNGC 3 cut(s) 123, 627, 811
BstDEI CTNAG 4 cut(s) 453, 621, 744, 898
BstDSI CCRYGG 3 cut(s) 489, 522, 549
BstF5I GGATG 2 cut(s) 228, 680
BstFNI CGCG 5 cut(s) 491, 551, 668, 698, 728
BstHHI GCGC 1 cut(s) 891
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 3 cut(s) 449, 650, 710
BstMBI GATC 1 cut(s) 136
BstNI CCWGG 1 cut(s) 353
BstNSI RCATGY 1 cut(s) 341
BstSCI CCNGG 2 cut(s) 351, 369
BstSFI CTRYAG 3 cut(s) 312, 438, 777
BstSLI GKGCMC 1 cut(s) 294
BstUI CGCG 5 cut(s) 491, 551, 668, 698, 728
BsuRI GGCC 2 cut(s) 116, 548
BtgI CCRYGG 3 cut(s) 489, 522, 549
BtrI CACGTC 1 cut(s) 821
BtsCI GGATG 2 cut(s) 228, 680
BveI ACCTGC 1 cut(s) 766
Cac8I GCNNGC 3 cut(s) 123, 627, 811
CaiI CAGNNNCTG 2 cut(s) 320, 785
CfoI GCGC 1 cut(s) 891
Cfr42I CCGCGG 2 cut(s) 492, 552
CseI GACGC 3 cut(s) 657, 687, 717
Csp6I GTAC 1 cut(s) 214
CviAII CATG 5 cut(s) 193, 286, 338, 523, 883
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 4 cut(s) 453, 621, 744, 898
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 546
Eco130I CCWWGG 3 cut(s) 522, 567, 612
Eco57I CTGAAG 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 3 cut(s) 522, 567, 612
ErhI CCWWGG 3 cut(s) 522, 567, 612
FaeI CATG 5 cut(s) 196, 289, 341, 526, 886
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FatI CATG 5 cut(s) 192, 285, 337, 522, 882
FblI GTMKAC 1 cut(s) 156
FokI GGATG 2 cut(s) 215, 667
GlaI GCGC 1 cut(s) 890
HaeIII GGCC 2 cut(s) 116, 548
HapII CCGG 1 cut(s) 371
HgaI GACGC 3 cut(s) 657, 687, 717
HhaI GCGC 1 cut(s) 891
Hin1II CATG 5 cut(s) 196, 289, 341, 526, 886
Hin6I GCGC 1 cut(s) 889
HinP1I GCGC 1 cut(s) 889
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 4 cut(s) 98, 181, 304, 894
HpaII CCGG 1 cut(s) 371
HphI GGTGA 2 cut(s) 385, 864
Hpy166II GTNNAC 4 cut(s) 157, 292, 824, 836
Hpy188I TCNGA 2 cut(s) 367, 685
Hpy188III TCNNGA 2 cut(s) 202, 224
Hpy8I GTNNAC 4 cut(s) 157, 292, 824, 836
Hpy99I CGWCG 2 cut(s) 158, 822
HpyCH4IV ACGT 3 cut(s) 153, 216, 820
HpyF3I CTNAG 4 cut(s) 453, 621, 744, 898
HpySE526I ACGT 3 cut(s) 153, 216, 820
Hsp92II CATG 5 cut(s) 196, 289, 341, 526, 886
HspAI GCGC 1 cut(s) 889
KspI CCGCGG 2 cut(s) 492, 552
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 2 cut(s) 90, 886
LpnPI CCDG 9 cut(s) 196, 246, 309, 338, 365, 384, 465, 771, 889
LweI GCATC 5 cut(s) 316, 337, 438, 592, 689
MaeII ACGT 3 cut(s) 153, 216, 820
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 3 cut(s) 160, 644, 877
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 8 cut(s) 64, 106, 143, 376, 549, 679, 739, 766
MseI TTAA 1 cut(s) 804
MspA1I CMGCKG 6 cut(s) 317, 491, 551, 599, 743, 782
MspI CCGG 1 cut(s) 371
MspR9I CCNGG 2 cut(s) 353, 371
MvaI CCWGG 1 cut(s) 353
MvnI CGCG 5 cut(s) 491, 551, 668, 698, 728
NciI CCSGG 1 cut(s) 371
NcoI CCATGG 1 cut(s) 522
NdeII GATC 1 cut(s) 136
NlaIII CATG 5 cut(s) 196, 289, 341, 526, 886
NmeAIII GCCGAG 2 cut(s) 679, 739
NspI RCATGY 1 cut(s) 341
PaqCI CACCTGC 1 cut(s) 766
PcsI WCGNNNNNNNCGW 1 cut(s) 817
PfeI GAWTC 3 cut(s) 181, 304, 894
PflMI CCANNNNNTGG 1 cut(s) 94
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 217
PshBI ATTAAT 1 cut(s) 804
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PstI CTGCAG 3 cut(s) 316, 442, 781
PstNI CAGNNNCTG 2 cut(s) 320, 785
PvuII CAGCTG 3 cut(s) 317, 743, 782
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SacII CCGCGG 2 cut(s) 492, 552
SalI GTCGAC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 804
Sau3AI GATC 1 cut(s) 136
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 353, 371
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 5 cut(s) 316, 337, 438, 592, 689
SfcI CTRYAG 3 cut(s) 312, 438, 777
Sfr303I CCGCGG 2 cut(s) 492, 552
SgrBI CCGCGG 2 cut(s) 492, 552
SmlI CTYRAG 1 cut(s) 839
SmoI CTYRAG 1 cut(s) 839
Sse9I AATT 3 cut(s) 160, 644, 877
StyD4I CCNGG 2 cut(s) 351, 369
StyI CCWWGG 3 cut(s) 522, 567, 612
TaiI ACGT 3 cut(s) 156, 219, 823
TaqI TCGA 3 cut(s) 135, 156, 407
TasI AATT 3 cut(s) 160, 644, 877
TfiI GAWTC 3 cut(s) 181, 304, 894
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TspDTI ATGAA 2 cut(s) 154, 878
Van91I CCANNNNNTGG 1 cut(s) 94
VneI GTGCAC 1 cut(s) 290
VspI ATTAAT 1 cut(s) 804
XceI RCATGY 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.