RLG00000030093

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001405
Physical Location & Seq
Reverse (-)
55028003 .. 55028620
618 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030093

Sequence Viewer

Length: 618 bp
ATGGCTTCTGCAATCTCCAAGAATAAGAAAAACCACCAGCCTGCTGTTAAGGCACTAGACGATGCAGAGGCTTATTTCAAGCTCCAAAAGTTGGACTCTGCAATCAAAGAGGCTATGCAAGCGAAAAACCTCGACCCTAATTTGCCCAACGTCGACAATTTTATCACAGCATACAAGATTCATAGGGCCATGTCCTCCAAGAAAAACTGGTATGTGATTCTTGGCATCCCCGAATCTACGCATTTATTAATTATCAATAAAAGATATAAGGAATTGGCACTCGTGGTGCACCCTGATAAGAATGTCTCTGCTGCTGCTGAAGGTGCTTTCCAGCATGTTAAAGCTGCCTTGGACTTTCTCTCTGACCCGGTGAGAAAGAAGGATTACGACAGGTCTTTAATGTCGAAAAAGAAGAAGTACGCTGCTGCTGCGGCAAGGAAAGCCACCGATTATAAGAATGCCGCGGCTGCTGCTGAGGCTGAGGCTGCTGCTGCCAGGAGTGAGATTAATGCACGCAAACGACGTTCTAATGCGCCCATGAGTGAACTCGAGTATGACATAAATCTAATAATGAAATACTCGCCAAAATACATGGAGCGCAAGTTCTGTGTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

206

Amino Acids

23.09

Weight (kDa)

9.69

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 69 - 130 2.5e-15 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AccB7I CCANNNNNTGG 1 cut(s) 91
AccI GTMKAC 1 cut(s) 153
AccII CGCG 1 cut(s) 464
AciI CCGC 3 cut(s) 431, 462, 464
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 1 cut(s) 79
AjnI CCWGG 1 cut(s) 494
AloI GAACNNNNNNTCC 1 cut(s) 587
AluBI AGCT 2 cut(s) 82, 344
AluI AGCT 2 cut(s) 82, 344
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 310
Alw44I GTGCAC 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 548
AoxI GGCC 1 cut(s) 186
ApaLI GTGCAC 1 cut(s) 287
AseI ATTAAT 2 cut(s) 248, 507
AspLEI GCGC 2 cut(s) 535, 600
AspS9I GGNCC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 548
BaeGI GKGCMC 1 cut(s) 291
BauI CACGAG 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 291
BbvCI CCTCAGC 2 cut(s) 474, 480
BciT130I CCWGG 1 cut(s) 496
BcnI CCSGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 310
BfaI CTAG 1 cut(s) 56
Bme1390I CCNGG 2 cut(s) 368, 496
BmeT110I CYCGRG 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 186
BmrFI CCNGG 2 cut(s) 368, 496
BmsI GCATC 2 cut(s) 52, 234
Bpu10I CCTNAGC 2 cut(s) 474, 480
BpuMI CCSGG 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 348, 462
BsaXI ACNNNNNCTCC 2 cut(s) 587, 617
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 212
BseBI CCWGG 1 cut(s) 496
BseDI CCNNGG 2 cut(s) 348, 462
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 2 cut(s) 465, 471
BseNI ACTGG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 291
Bsh1236I CGCG 1 cut(s) 464
BshFI GGCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 310
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 548
Bsp1286I GDGCHC 1 cut(s) 291
BspACI CCGC 3 cut(s) 431, 462, 464
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 2 cut(s) 466, 472
BspFNI CGCG 1 cut(s) 464
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 348, 462
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 1 cut(s) 496
BstC8I GCNNGC 3 cut(s) 42, 120, 514
BstDEI CTNAG 2 cut(s) 474, 480
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 464
BstHHI GCGC 2 cut(s) 535, 600
BstMAI GTCTC 1 cut(s) 310
BstNI CCWGG 1 cut(s) 496
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 366, 494
BstSLI GKGCMC 1 cut(s) 291
BstUI CGCG 1 cut(s) 464
BsuRI GGCC 1 cut(s) 188
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 1 cut(s) 225
Cac8I GCNNGC 3 cut(s) 42, 120, 514
CfoI GCGC 2 cut(s) 535, 600
Cfr13I GGNCC 1 cut(s) 186
Cfr42I CCGCGG 1 cut(s) 465
Csp6I GTAC 1 cut(s) 418
CviAII CATG 4 cut(s) 190, 335, 538, 592
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 474, 480
Eco130I CCWWGG 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 494
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 4 cut(s) 193, 338, 541, 595
FatI CATG 4 cut(s) 189, 334, 537, 591
FblI GTMKAC 1 cut(s) 153
FokI GGATG 1 cut(s) 212
FspBI CTAG 1 cut(s) 56
GlaI GCGC 2 cut(s) 534, 599
HaeIII GGCC 1 cut(s) 188
HapII CCGG 1 cut(s) 368
HhaI GCGC 2 cut(s) 535, 600
Hin1II CATG 4 cut(s) 193, 338, 541, 595
Hin6I GCGC 2 cut(s) 533, 598
HinP1I GCGC 2 cut(s) 533, 598
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 4 cut(s) 95, 178, 217, 233
HpaII CCGG 1 cut(s) 368
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 3 cut(s) 154, 289, 545
Hpy188I TCNGA 1 cut(s) 364
Hpy8I GTNNAC 3 cut(s) 154, 289, 545
Hpy99I CGWCG 2 cut(s) 155, 525
HpyAV CCTTC 2 cut(s) 314, 373
HpyCH4IV ACGT 2 cut(s) 150, 523
HpyCH4V TGCA 6 cut(s) 11, 65, 101, 118, 289, 512
HpyF3I CTNAG 2 cut(s) 474, 480
HpySE526I ACGT 2 cut(s) 150, 523
Hsp92II CATG 4 cut(s) 193, 338, 541, 595
HspAI GCGC 2 cut(s) 533, 598
KspI CCGCGG 1 cut(s) 465
LmnI GCTCC 2 cut(s) 87, 595
LweI GCATC 2 cut(s) 52, 234
MaeI CTAG 1 cut(s) 56
MaeII ACGT 2 cut(s) 150, 523
MboII GAAGA 1 cut(s) 424
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 4 cut(s) 139, 157, 249, 272
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 6 cut(s) 61, 103, 140, 205, 469, 475
MseI TTAA 5 cut(s) 48, 248, 339, 398, 507
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 2 cut(s) 368, 496
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 1 cut(s) 496
MvnI CGCG 1 cut(s) 464
NciI CCSGG 1 cut(s) 368
NlaIII CATG 4 cut(s) 193, 338, 541, 595
NspI RCATGY 1 cut(s) 338
PaeR7I CTCGAG 1 cut(s) 548
PcsI WCGNNNNNNNCGW 1 cut(s) 520
PctI GAATGC 1 cut(s) 463
PfeI GAWTC 3 cut(s) 178, 217, 233
PflMI CCANNNNNTGG 1 cut(s) 91
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PshBI ATTAAT 2 cut(s) 248, 507
PsiI TTATAA 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 494
PspGI CCWGG 1 cut(s) 494
PspPI GGNCC 1 cut(s) 186
PspXI VCTCGAGB 1 cut(s) 548
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
SacII CCGCGG 1 cut(s) 465
SalI GTCGAC 1 cut(s) 152
SaqAI TTAA 5 cut(s) 48, 248, 339, 398, 507
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 2 cut(s) 368, 496
SduI GDGCHC 1 cut(s) 291
SetI ASST 7 cut(s) 84, 132, 153, 325, 346, 395, 526
SfaNI GCATC 2 cut(s) 52, 234
Sfr274I CTCGAG 1 cut(s) 548
Sfr303I CCGCGG 1 cut(s) 465
SgrBI CCGCGG 1 cut(s) 465
SlaI CTCGAG 1 cut(s) 548
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 4 cut(s) 139, 157, 249, 272
SsiI CCGC 3 cut(s) 431, 462, 464
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 2 cut(s) 366, 494
StyI CCWWGG 1 cut(s) 348
TaiI ACGT 2 cut(s) 153, 526
TaqI TCGA 4 cut(s) 132, 153, 404, 549
TasI AATT 4 cut(s) 139, 157, 249, 272
TauI GCSGC 3 cut(s) 434, 464, 467
TfiI GAWTC 3 cut(s) 178, 217, 233
Tru1I TTAA 5 cut(s) 48, 248, 339, 398, 507
Tru9I TTAA 5 cut(s) 48, 248, 339, 398, 507
TspDTI ATGAA 2 cut(s) 170, 587
Van91I CCANNNNNTGG 1 cut(s) 91
VneI GTGCAC 1 cut(s) 287
VspI ATTAAT 2 cut(s) 248, 507
XceI RCATGY 1 cut(s) 338
XhoI CTCGAG 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.