RLG00000030105

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001405
Physical Location & Seq
Forward (+)
55386811 .. 55387407
597 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030105

Sequence Viewer

Length: 597 bp
ATGGCCAGCACTTACCCGTTTCCTTATGATCCCCTCGTTAACCTCGCCAAGATGGCCGCTGTGAAGGCACGAGATACTGCAGAAGCGTTTTTCAAGCTTCAATACTTCGAGTTGGCGATCAAGCAGGCTATGGTAGCCAAACAATTCGACCCAGATTTGCAAGACGTCGATCACTTCATCCTAGCATACCAGATTCATAAAGCTGTGTCAGAGAAGAAAGATTGGTATCATGTTCTTGGCTTCCAACAGGTTACTAACTATGTAACTATCAAGAAACAATACAAAGAATTGGCGCGCTTTGTGCACCCAGACAAGAATAGCTCTGCTGCTGCAGAAGGGGCTTTCAAGCATGTCAAAGCGGCGTTGGACTTTCTCTCTGACTCTGCCAAAAAGAAGGCTTACGACAAGTTGTTAAGTACTGAGCGGTTTCAAGGGTCTAAGGTCAAGAACACTCGCAAGAGGGCTTCCCCACAGGGTAAGACCAGTACTACTGGAGATGATCGGGATGTTTTCAAGAAGACTATCAAGATAATGAGGAAAACGAACCCAGGTCAAAAGACATGTTGTATGAGGATATCTGTATGTAGGGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

199

Amino Acids

22.52

Weight (kDa)

9.74

Isoelectric Point (pI)

24.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 74 - 135 1e-16 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 168
AccBSI CCGCTC 1 cut(s) 424
AccII CGCG 1 cut(s) 295
AciI CCGC 3 cut(s) 57, 359, 424
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 2 cut(s) 3, 54
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 2 cut(s) 418, 487
AflIII ACRYGT 1 cut(s) 560
AgsI TTSAA 5 cut(s) 94, 101, 346, 431, 514
AjnI CCWGG 1 cut(s) 547
AluBI AGCT 3 cut(s) 97, 203, 321
AluI AGCT 3 cut(s) 97, 203, 321
Alw21I GWGCWC 1 cut(s) 306
Alw44I GTGCAC 1 cut(s) 302
AlwI GGATC 1 cut(s) 23
AoxI GGCC 2 cut(s) 3, 54
ApaLI GTGCAC 1 cut(s) 302
ApeKI GCWGC 2 cut(s) 326, 329
AspLEI GCGC 2 cut(s) 295, 297
BaeGI GKGCMC 1 cut(s) 306
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 313, 316
BccI CCATC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 549
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 2 cut(s) 78, 330
BglI GCCNNNNNGGC 1 cut(s) 53
BisI GCNGC 4 cut(s) 57, 327, 330, 360
BlsI GCNGC 4 cut(s) 58, 328, 331, 361
BmcAI AGTACT 2 cut(s) 418, 487
Bme1390I CCNGG 1 cut(s) 549
BmrFI CCNGG 1 cut(s) 549
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 1 cut(s) 513
BsaBI GATNNNNATC 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 547
Bse1I ACTGG 2 cut(s) 483, 496
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 1 cut(s) 547
BseGI GGATG 2 cut(s) 177, 511
BseJI GATNNNNATC 1 cut(s) 225
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 2 cut(s) 483, 496
BsePI GCGCGC 1 cut(s) 293
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 2 cut(s) 313, 316
Bsh1236I CGCG 1 cut(s) 295
BshFI GGCC 2 cut(s) 5, 56
BsiHKAI GWGCWC 1 cut(s) 306
BsnI GGCC 2 cut(s) 5, 56
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 4 cut(s) 28, 117, 169, 499
BspACI CCGC 3 cut(s) 57, 359, 424
BspANI GGCC 2 cut(s) 5, 56
BspCNI CTCAG 1 cut(s) 412
BspFNI CGCG 1 cut(s) 295
BspMAI CTGCAG 2 cut(s) 82, 334
BspPI GGATC 1 cut(s) 23
BsrBI CCGCTC 1 cut(s) 424
BsrI ACTGG 2 cut(s) 483, 496
BssECI CCNNGG 1 cut(s) 547
BssHII GCGCGC 1 cut(s) 293
BssMI GATC 4 cut(s) 28, 117, 169, 499
BssNI GRCGYC 1 cut(s) 165
BssSI CACGAG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 549
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 3 cut(s) 7, 126, 295
BstDEI CTNAG 2 cut(s) 420, 438
BstF5I GGATG 2 cut(s) 177, 511
BstFNI CGCG 1 cut(s) 295
BstHHI GCGC 2 cut(s) 295, 297
BstKTI GATC 4 cut(s) 31, 120, 172, 502
BstMBI GATC 4 cut(s) 28, 117, 169, 499
BstMWI GCNNNNNNNGC 5 cut(s) 53, 65, 134, 301, 338
BstNI CCWGG 1 cut(s) 549
BstNSI RCATGY 2 cut(s) 353, 564
BstSCI CCNGG 1 cut(s) 547
BstSFI CTRYAG 2 cut(s) 78, 330
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 2 cut(s) 313, 316
BstV2I GAAGAC 1 cut(s) 524
BsuRI GGCC 2 cut(s) 5, 56
BtsCI GGATG 2 cut(s) 177, 511
Cac8I GCNNGC 3 cut(s) 7, 126, 295
CfoI GCGC 2 cut(s) 295, 297
Csp6I GTAC 2 cut(s) 417, 486
CviAII CATG 3 cut(s) 230, 350, 561
CviQI GTAC 2 cut(s) 417, 486
DdeI CTNAG 2 cut(s) 420, 438
DpnI GATC 4 cut(s) 30, 119, 171, 501
DpnII GATC 4 cut(s) 28, 117, 169, 499
EaeI YGGCCR 2 cut(s) 3, 54
Eco32I GATATC 1 cut(s) 576
EcoRII CCWGG 1 cut(s) 547
EcoRV GATATC 1 cut(s) 576
FaeI CATG 3 cut(s) 233, 353, 564
FatI CATG 3 cut(s) 229, 349, 560
Fnu4HI GCNGC 4 cut(s) 57, 327, 330, 360
FokI GGATG 2 cut(s) 164, 518
Fsp4HI GCNGC 4 cut(s) 57, 327, 330, 360
FspBI CTAG 1 cut(s) 182
GlaI GCGC 2 cut(s) 294, 296
GluI GCNGC 4 cut(s) 57, 327, 330, 360
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 2 cut(s) 5, 56
HhaI GCGC 2 cut(s) 295, 297
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 3 cut(s) 233, 353, 564
Hin6I GCGC 2 cut(s) 293, 295
HinP1I GCGC 2 cut(s) 293, 295
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 2 cut(s) 193, 380
HpaI GTTAAC 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 40, 304
Hpy188I TCNGA 2 cut(s) 211, 379
Hpy188III TCNNGA 5 cut(s) 271, 445, 503, 514, 526
Hpy8I GTNNAC 2 cut(s) 40, 304
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 3 cut(s) 58, 329, 388
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 4 cut(s) 80, 160, 304, 332
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 65, 134, 301, 338
HpyF3I CTNAG 2 cut(s) 420, 438
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 3 cut(s) 233, 353, 564
HspAI GCGC 2 cut(s) 293, 295
KspAI GTTAAC 1 cut(s) 40
Kzo9I GATC 4 cut(s) 28, 117, 169, 499
Lsp1109I GCAGC 2 cut(s) 313, 316
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 250, 262
MalI GATC 4 cut(s) 30, 119, 171, 501
MbiI CCGCTC 1 cut(s) 424
MboI GATC 4 cut(s) 28, 117, 169, 499
MboII GAAGA 2 cut(s) 226, 529
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 143, 287
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 2 cut(s) 268, 345
MnlI CCTC 5 cut(s) 44, 53, 453, 528, 564
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 39, 413
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 549
MvaI CCWGG 1 cut(s) 549
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 5 cut(s) 53, 65, 134, 301, 338
NdeII GATC 4 cut(s) 28, 117, 169, 499
NlaIII CATG 3 cut(s) 233, 353, 564
NspI RCATGY 2 cut(s) 353, 564
PauI GCGCGC 1 cut(s) 293
PciI ACATGT 1 cut(s) 560
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 4 cut(s) 58, 328, 331, 361
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
PscI ACATGT 1 cut(s) 560
Psp6I CCWGG 1 cut(s) 547
PspGI CCWGG 1 cut(s) 547
PstI CTGCAG 2 cut(s) 82, 334
PteI GCGCGC 1 cut(s) 293
RsaI GTAC 2 cut(s) 418, 487
RsaNI GTAC 2 cut(s) 417, 486
SaqAI TTAA 2 cut(s) 39, 413
SatI GCNGC 4 cut(s) 57, 327, 330, 360
Sau3AI GATC 4 cut(s) 28, 117, 169, 499
ScaI AGTACT 2 cut(s) 418, 487
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 549
SduI GDGCHC 1 cut(s) 306
SetI ASST 8 cut(s) 45, 99, 168, 205, 252, 323, 444, 553
SfcI CTRYAG 2 cut(s) 78, 330
Sse9I AATT 2 cut(s) 143, 287
SsiI CCGC 3 cut(s) 57, 359, 424
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 547
TaiI ACGT 1 cut(s) 168
TaqI TCGA 3 cut(s) 108, 147, 168
TasI AATT 2 cut(s) 143, 287
TatI WGTACW 2 cut(s) 416, 485
TauI GCSGC 2 cut(s) 59, 362
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 2 cut(s) 39, 413
Tru9I TTAA 2 cut(s) 39, 413
TseI GCWGC 2 cut(s) 326, 329
TspDTI ATGAA 2 cut(s) 166, 185
VneI GTGCAC 1 cut(s) 302
XceI RCATGY 2 cut(s) 353, 564
XspI CTAG 1 cut(s) 182
ZraI GACGTC 1 cut(s) 166
ZrmI AGTACT 2 cut(s) 418, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.