Rh1BG057700

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001405
Physical Location & Seq
Reverse (-)
8526816 .. 8527564
749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG057700.1

Sequence Viewer

Length: 603 bp
ATGGCCAGCAGTAGCACTTACCCGTTTCCTCATGATCCCCTCGTTAACCTCGCGAAGATGGCTGCTGTGAAGGCACGAGATACTGCAGAAGCGTTTTTCAAGCTTCAATACTTCGAGTTGGCGATCAAGCAGGCTATGGTAGCCAAACAATTCGACCCGGATTTGCAAGACGTTGATCACTTCATCCTAGCATACCAGATTCATAAAGCTGTGTCAGAGAAGAAAGATTGGTATCATGTTCTTGGCTTCCAACAGGTTACTGACTATGTAACCATCAAGAAACAATACAAAGAATTGGCGCGCTTTGTGCACCCAGACAAGAATAGCTCTGCTGCTGCAGAAGGGGCTTTCAAGCATGTCAAAGCGGCATTGGACTTTCTCTCTGACTCTGCCAAAAAGAAGGCTTACGACAAGTTGTTAAGTACTGGGCAGTTACAAGGGTCTAAGGTCAAGAACACTCGCAAGAGGGCTTGCCCACAGGCTAAGACCAGTACTACTGGAGATGATCGGGATGTTTTCAAGAAGACTATCAAGATAATGAGGAAAACGAACCCAGGTCAAAAGACATGTTGTATGAGGATATCTGTATGTAGGGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

200

Amino Acids

22.57

Weight (kDa)

9.66

Isoelectric Point (pI)

27.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 76 - 137 6.3e-17 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 53, 301
AciI CCGC 1 cut(s) 365
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 424, 493
AflIII ACRYGT 1 cut(s) 566
AgsI TTSAA 4 cut(s) 100, 107, 352, 520
AjnI CCWGG 1 cut(s) 553
AluBI AGCT 3 cut(s) 103, 209, 327
AluI AGCT 3 cut(s) 103, 209, 327
Alw21I GWGCWC 1 cut(s) 312
Alw44I GTGCAC 1 cut(s) 308
AlwI GGATC 1 cut(s) 29
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 308
ApeKI GCWGC 3 cut(s) 62, 332, 335
AspLEI GCGC 2 cut(s) 301, 303
AsuC2I CCSGG 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 312
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 3 cut(s) 49, 319, 322
BccI CCATC 2 cut(s) 52, 281
BciT130I CCWGG 1 cut(s) 555
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 1 cut(s) 158
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 2 cut(s) 84, 336
BisI GCNGC 4 cut(s) 63, 333, 336, 366
BlsI GCNGC 4 cut(s) 64, 334, 337, 367
BmcAI AGTACT 2 cut(s) 424, 493
Bme1390I CCNGG 2 cut(s) 158, 555
BmrFI CCNGG 2 cut(s) 158, 555
BmrI ACTGGG 1 cut(s) 435
BmuI ACTGGG 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 530
BpmI CTGGAG 1 cut(s) 519
BpuMI CCSGG 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 553
Bse1I ACTGG 3 cut(s) 430, 489, 502
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 1 cut(s) 555
BseDI CCNNGG 1 cut(s) 553
BseGI GGATG 2 cut(s) 183, 517
BseJI GATNNNNATC 1 cut(s) 231
BseNI ACTGG 3 cut(s) 430, 489, 502
BsePI GCGCGC 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 312
BseXI GCAGC 3 cut(s) 49, 319, 322
Bsh1236I CGCG 2 cut(s) 53, 301
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 158
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 4 cut(s) 34, 123, 175, 505
Bsp68I TCGCGA 1 cut(s) 53
BspACI CCGC 1 cut(s) 365
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 2 cut(s) 53, 301
BspHI TCATGA 1 cut(s) 31
BspMAI CTGCAG 2 cut(s) 88, 340
BspPI GGATC 1 cut(s) 29
BsrI ACTGG 3 cut(s) 430, 489, 502
BssECI CCNNGG 1 cut(s) 553
BssHII GCGCGC 1 cut(s) 299
BssMI GATC 4 cut(s) 34, 123, 175, 505
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 555
BstC8I GCNNGC 4 cut(s) 7, 132, 301, 472
BstDEI CTNAG 2 cut(s) 444, 483
BstF5I GGATG 2 cut(s) 183, 517
BstFNI CGCG 2 cut(s) 53, 301
BstHHI GCGC 2 cut(s) 301, 303
BstKTI GATC 4 cut(s) 37, 126, 178, 508
BstMBI GATC 4 cut(s) 34, 123, 175, 505
BstMWI GCNNNNNNNGC 5 cut(s) 59, 71, 140, 307, 344
BstNI CCWGG 1 cut(s) 555
BstNSI RCATGY 2 cut(s) 359, 570
BstSCI CCNGG 2 cut(s) 156, 553
BstSFI CTRYAG 2 cut(s) 84, 336
BstSLI GKGCMC 1 cut(s) 312
BstUI CGCG 2 cut(s) 53, 301
BstV1I GCAGC 3 cut(s) 49, 319, 322
BstV2I GAAGAC 1 cut(s) 530
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 183, 517
BtuMI TCGCGA 1 cut(s) 53
Cac8I GCNNGC 4 cut(s) 7, 132, 301, 472
CciI TCATGA 1 cut(s) 31
CfoI GCGC 2 cut(s) 301, 303
Csp6I GTAC 2 cut(s) 423, 492
CviAII CATG 4 cut(s) 32, 236, 356, 567
CviQI GTAC 2 cut(s) 423, 492
DdeI CTNAG 2 cut(s) 444, 483
DpnI GATC 4 cut(s) 36, 125, 177, 507
DpnII GATC 4 cut(s) 34, 123, 175, 505
EaeI YGGCCR 1 cut(s) 3
Eco32I GATATC 1 cut(s) 582
EcoRII CCWGG 1 cut(s) 553
EcoRV GATATC 1 cut(s) 582
FaeI CATG 4 cut(s) 35, 239, 359, 570
FatI CATG 4 cut(s) 31, 235, 355, 566
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 4 cut(s) 63, 333, 336, 366
FokI GGATG 2 cut(s) 170, 524
Fsp4HI GCNGC 4 cut(s) 63, 333, 336, 366
FspBI CTAG 1 cut(s) 188
GlaI GCGC 2 cut(s) 300, 302
GluI GCNGC 4 cut(s) 63, 333, 336, 366
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 158
HhaI GCGC 2 cut(s) 301, 303
Hin1II CATG 4 cut(s) 35, 239, 359, 570
Hin6I GCGC 2 cut(s) 299, 301
HinP1I GCGC 2 cut(s) 299, 301
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 2 cut(s) 199, 386
HpaI GTTAAC 1 cut(s) 46
HpaII CCGG 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 46, 310
Hpy188I TCNGA 2 cut(s) 217, 385
Hpy188III TCNNGA 7 cut(s) 32, 52, 277, 451, 509, 520, 532
Hpy8I GTNNAC 2 cut(s) 46, 310
HpyAV CCTTC 3 cut(s) 64, 335, 394
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 4 cut(s) 86, 166, 310, 338
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 71, 140, 307, 344
HpyF3I CTNAG 2 cut(s) 444, 483
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 4 cut(s) 35, 239, 359, 570
HspAI GCGC 2 cut(s) 299, 301
Ksp22I TGATCA 1 cut(s) 175
KspAI GTTAAC 1 cut(s) 46
Kzo9I GATC 4 cut(s) 34, 123, 175, 505
Lsp1109I GCAGC 3 cut(s) 49, 319, 322
MaeI CTAG 1 cut(s) 188
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 3 cut(s) 256, 268, 432
MalI GATC 4 cut(s) 36, 125, 177, 507
MboI GATC 4 cut(s) 34, 123, 175, 505
MboII GAAGA 3 cut(s) 67, 232, 535
MhlI GDGCHC 1 cut(s) 312
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 149, 293
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 6 cut(s) 39, 50, 59, 459, 534, 570
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 45, 419
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 2 cut(s) 158, 555
MvaI CCWGG 1 cut(s) 555
MvnI CGCG 2 cut(s) 53, 301
MwoI GCNNNNNNNGC 5 cut(s) 59, 71, 140, 307, 344
NciI CCSGG 1 cut(s) 158
NdeII GATC 4 cut(s) 34, 123, 175, 505
NlaIII CATG 4 cut(s) 35, 239, 359, 570
NruI TCGCGA 1 cut(s) 53
NspI RCATGY 2 cut(s) 359, 570
PagI TCATGA 1 cut(s) 31
PauI GCGCGC 1 cut(s) 299
PciI ACATGT 1 cut(s) 566
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 4 cut(s) 64, 334, 337, 367
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
PscI ACATGT 1 cut(s) 566
Psp6I CCWGG 1 cut(s) 553
PspGI CCWGG 1 cut(s) 553
PstI CTGCAG 2 cut(s) 88, 340
PteI GCGCGC 1 cut(s) 299
RruI TCGCGA 1 cut(s) 53
RsaI GTAC 2 cut(s) 424, 493
RsaNI GTAC 2 cut(s) 423, 492
SaqAI TTAA 2 cut(s) 45, 419
SatI GCNGC 4 cut(s) 63, 333, 336, 366
Sau3AI GATC 4 cut(s) 34, 123, 175, 505
ScaI AGTACT 2 cut(s) 424, 493
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 2 cut(s) 158, 555
SduI GDGCHC 1 cut(s) 312
SetI ASST 8 cut(s) 51, 105, 174, 211, 258, 329, 450, 559
SfcI CTRYAG 2 cut(s) 84, 336
Sse9I AATT 2 cut(s) 149, 293
SsiI CCGC 1 cut(s) 365
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 156, 553
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 114, 153
TasI AATT 2 cut(s) 149, 293
TatI WGTACW 2 cut(s) 422, 491
TauI GCSGC 1 cut(s) 368
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 2 cut(s) 45, 419
Tru9I TTAA 2 cut(s) 45, 419
TseI GCWGC 3 cut(s) 62, 332, 335
TspDTI ATGAA 2 cut(s) 172, 191
VneI GTGCAC 1 cut(s) 308
XceI RCATGY 2 cut(s) 359, 570
XspI CTAG 1 cut(s) 188
ZrmI AGTACT 2 cut(s) 424, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.