Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001405

Physical Location & Seq

Genomic Coordinates Reverse (-)

25564131 .. 25572013

Gene Structure 7883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32492.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTGCTGTAAAGGCACGAGATACCGCAGAAGAGTTCTTCAAGCTTCAACACTTCGAGTTGGCGATCATGCAGGCCATGGTGGCCAAAGAATTCCACCCTGATTTGCAAGGTGTGGATCACTTCATCTTAGCGTACCAGATCCATAAAGCCGTGTCAGAGAAGAAAGATCGCTCTGTTGTTGCCGAAGGGGCTTTCAAACATGTCAAAGCGGCATGGGACTTTCTCTCTGATCCTGCCAAAAAGAAGGCTTACGACAAGTCGTTAAGGTGTCCGCAGTTTCAAGGGTCGAATGTCAAGAACACTCGCAAAAGGGATTGCCCTAATAAGGGGAGGACCGCTTCTACTGGAGATGATCGTGGAGGAGGCGACAGGCTGTGGGCTCATCGTTTTGGGCTCCATGATATCACAAGTGAGATTCCTAAGGGTAGCGGTGGATGGAGGGCGGATCAGGGGGTAGTGGTTCGTGGCTGGGCAGTCGGATATCCGTCATGGGAGATCACGGTGGACTTTGGCAGCGCAAAGGTCATTTCCAACGACGGTGATTTGGTTGTCAGGTTGGATGGTGGCGGCTCCCCCGTGGAGGATTGGGTGACTGGAAGGATCTCTAGCTCTGGTGGAGGTTTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

211

Amino Acids

22.96

Weight (kDa)

8.82

Isoelectric Point (pI)

29.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06750 FvH4_2g04812 FvH4_6g32492 FvH4_7g03441 FvH4_7g03550 FvH4_7g03580 FvH4_7g03920
malus_domestica	MD07G1047000.v1.1
prunus_persica	Prupe.2G041600_v2.0.a1 Prupe.2G041700_v2.0.a1
rosa_laevigata	RLG00000030088 RLG00000030092 RLG00000030093 RLG00000030105
rosa_multiflora	Rmu_co8325403.1_g000001 Rmu_sc0000028.1_g000009 Rmu_sc0002767.1_g000001 Rmu_sc0006009.1_g000006 Rmu_sc0015118.1_g000001 Rmu_sc0024776.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324070 Rroxscaffold_4G00324090 Rroxscaffold_4G00324350
rosa_rugosa	Rorug01G0054500 Rorug01G0054600 Rorug01G0056000 Rorug01G0056100 Rorug01G0057500
rosa_samantha	Rh1AG068900 Rh1AG070000 Rh1AG070500 Rh1AG070800 Rh1AG071100 Rh1AG072700 Rh1AG073600 Rh1AG074400 Rh1BG057700 Rh1BG059200 Rh1BG059300 Rh1BG059900 Rh1CG070600 Rh1CG071800 Rh1CG072600 Rh1DG075300 Rh1DG077200 Rh1DG077500 Rh1DG078400 Rh1DG079600
rosa_wichuraiana	Rw0G003140 Rw0G020740 Rw1G005790 Rw1G005910 Rw1G005970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	27, 212, 275, 339, 432, 446, 570
AclWI	GGATC	5 cut(s)	126, 136, 227, 456, 611
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	92
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	3 cut(s)	328, 329, 583
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	4 cut(s)	43, 50, 199, 284
AluBI	AGCT	2 cut(s)	46, 612
AluI	AGCT	2 cut(s)	46, 612
AlwI	GGATC	5 cut(s)	126, 136, 227, 456, 611
AoxI	GGCC	2 cut(s)	75, 84
ApeKI	GCWGC	2 cut(s)	5, 516
ApoI	RAATTY	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	1 cut(s)	336
AsuHPI	GGTGA	2 cut(s)	554, 604
AvaII	GGWCC	1 cut(s)	336
AxyI	CCTNAGG	1 cut(s)	423
BalI	TGGCCA	1 cut(s)	86
BanII	GRGCYC	2 cut(s)	385, 399
BauI	CACGAG	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	528
BccI	CCATC	2 cut(s)	432, 557
BceAI	ACGGC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	609
BglI	GCCNNNNNGGC	2 cut(s)	83, 191
BisI	GCNGC	4 cut(s)	6, 213, 517, 571
BlsI	GCNGC	4 cut(s)	7, 214, 518, 572
Bme18I	GGWCC	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	2 cut(s)	398, 574
BpmI	CTGGAG	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	78, 579
Bsc4I	CCNNNNNNNGG	3 cut(s)	328, 329, 583
Bse1I	ACTGG	2 cut(s)	352, 601
Bse21I	CCTNAGG	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	78, 579
BseGI	GGATG	2 cut(s)	443, 568
BseLI	CCNNNNNNNGG	3 cut(s)	328, 329, 583
BseNI	ACTGG	2 cut(s)	352, 601
BseRI	GAGGAG	1 cut(s)	378
BseXI	GCAGC	1 cut(s)	528
BseYI	CCCAGC	1 cut(s)	471
BshFI	GGCC	2 cut(s)	77, 86
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	3 cut(s)	328, 329, 583
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	77, 86
Bsp1286I	GDGCHC	2 cut(s)	385, 399
Bsp143I	GATC	9 cut(s)	66, 118, 141, 169, 232, 355, 448, 498, 603
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	7 cut(s)	27, 212, 275, 339, 432, 446, 570
BspANI	GGCC	2 cut(s)	77, 86
BspLI	GGNNCC	2 cut(s)	398, 574
BspPI	GGATC	5 cut(s)	126, 136, 227, 456, 611
BsrI	ACTGG	2 cut(s)	352, 601
BssECI	CCNNGG	2 cut(s)	78, 579
BssMI	GATC	9 cut(s)	66, 118, 141, 169, 232, 355, 448, 498, 603
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	505, 542
Bst6I	CTCTTC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	130, 423
BstDSI	CCRYGG	2 cut(s)	78, 579
BstF5I	GGATG	2 cut(s)	443, 568
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	9 cut(s)	69, 121, 144, 172, 235, 358, 451, 501, 606
BstMBI	GATC	9 cut(s)	66, 118, 141, 169, 232, 355, 448, 498, 603
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 83, 191
BstNSI	RCATGY	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	528
BstX2I	RGATCY	2 cut(s)	141, 603
BstYI	RGATCY	2 cut(s)	141, 603
Bsu36I	CCTNAGG	1 cut(s)	423
BsuRI	GGCC	2 cut(s)	77, 86
BtgI	CCRYGG	2 cut(s)	78, 579
BtsCI	GGATG	2 cut(s)	443, 568
Cac8I	GCNNGC	1 cut(s)	75
CfoI	GCGC	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	6 cut(s)	70, 79, 203, 216, 401, 492
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	130, 423
DpnI	GATC	9 cut(s)	68, 120, 143, 171, 234, 357, 450, 500, 605
DpnII	GATC	9 cut(s)	66, 118, 141, 169, 232, 355, 448, 498, 603
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	461
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	2 cut(s)	385, 399
Eco32I	GATATC	2 cut(s)	406, 485
Eco47I	GGWCC	1 cut(s)	336
Eco81I	CCTNAGG	1 cut(s)	423
EcoRI	GAATTC	1 cut(s)	92
EcoRV	GATATC	2 cut(s)	406, 485
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	2 cut(s)	385, 399
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	6 cut(s)	73, 82, 206, 219, 404, 495
FaiI	YATR	7 cut(s)	71, 80, 147, 204, 217, 402, 493
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	6 cut(s)	69, 78, 202, 215, 400, 491
Fnu4HI	GCNGC	4 cut(s)	6, 213, 517, 571
FokI	GGATG	2 cut(s)	450, 575
FriOI	GRGCYC	2 cut(s)	385, 399
Fsp4HI	GCNGC	4 cut(s)	6, 213, 517, 571
FspBI	CTAG	1 cut(s)	609
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	4 cut(s)	6, 213, 517, 571
GsaI	CCCAGC	1 cut(s)	475
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	77, 86
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	6 cut(s)	73, 82, 206, 219, 404, 495
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	1 cut(s)	418
HphI	GGTGA	2 cut(s)	554, 604
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	3 cut(s)	160, 232, 482
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	1 cut(s)	542
HpyAV	CCTTC	3 cut(s)	182, 241, 594
HpyCH4III	ACNGT	2 cut(s)	505, 542
HpyCH4V	TGCA	2 cut(s)	73, 109
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 83, 191
HpyF3I	CTNAG	2 cut(s)	130, 423
Hsp92II	CATG	6 cut(s)	73, 82, 206, 219, 404, 495
HspAI	GCGC	1 cut(s)	519
Kzo9I	GATC	9 cut(s)	66, 118, 141, 169, 232, 355, 448, 498, 603
LmnI	GCTCC	2 cut(s)	402, 578
Lsp1109I	GCAGC	1 cut(s)	528
MaeI	CTAG	1 cut(s)	609
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	9 cut(s)	68, 120, 143, 171, 234, 357, 450, 500, 605
MboI	GATC	9 cut(s)	66, 118, 141, 169, 232, 355, 448, 498, 603
MboII	GAAGA	3 cut(s)	31, 44, 175
MflI	RGATCY	2 cut(s)	141, 603
MhlI	GDGCHC	2 cut(s)	385, 399
MlsI	TGGCCA	1 cut(s)	86
MluCI	AATT	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	86
MmeI	TCCRAC	3 cut(s)	460, 540, 558
MnlI	CCTC	6 cut(s)	327, 356, 359, 435, 577, 614
Mox20I	TGGCCA	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	86
MseI	TTAA	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	86
MwoI	GCNNNNNNNGC	3 cut(s)	14, 83, 191
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	9 cut(s)	66, 118, 141, 169, 232, 355, 448, 498, 603
NlaIII	CATG	6 cut(s)	73, 82, 206, 219, 404, 495
NlaIV	GGNNCC	2 cut(s)	398, 574
NmuCI	GTSAC	1 cut(s)	592
NspI	RCATGY	1 cut(s)	206
PciI	ACATGT	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	418
PkrI	GCNGC	4 cut(s)	7, 214, 518, 572
PscI	ACATGT	1 cut(s)	202
PspFI	CCCAGC	1 cut(s)	471
PspN4I	GGNNCC	2 cut(s)	398, 574
PspPI	GGNCC	1 cut(s)	336
PsuI	RGATCY	2 cut(s)	141, 603
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	4 cut(s)	6, 213, 517, 571
Sau3AI	GATC	9 cut(s)	66, 118, 141, 169, 232, 355, 448, 498, 603
Sau96I	GGNCC	1 cut(s)	336
SduI	GDGCHC	2 cut(s)	385, 399
SetI	ASST	7 cut(s)	48, 115, 272, 528, 560, 614, 625
SfiI	GGCCNNNNNGGCC	1 cut(s)	83
SinI	GGWCC	1 cut(s)	336
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	7 cut(s)	27, 212, 275, 339, 432, 446, 570
SspMI	CTAG	1 cut(s)	609
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	505, 542
TaqI	TCGA	2 cut(s)	57, 290
TasI	AATT	1 cut(s)	92
TauI	GCSGC	2 cut(s)	215, 573
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	2 cut(s)	5, 516
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	1 cut(s)	115
TspGWI	ACGGA	1 cut(s)	477
VpaK11BI	GGWCC	1 cut(s)	336
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	206
XspI	CTAG	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.