Rorug01G0054500

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001405
Physical Location & Seq
Reverse (-)
9005655 .. 9006855
1201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0054500.1

Sequence Viewer

Length: 684 bp
ATGTTGGGGACTGATACAGGGGCTCAGGACAAGGAGTGGTTCTTCTTCACCAGAATGTATTACAAGTACAACAAAAGCTCTCGCTCAAATCGGAGCACGAAGAAGGGATACTGGAAAATCACAGGCAAGGAGCGTGGGATTAAGGCTCGACGATCCAAAGCTGTGATTGGGAGCAAGAGGACATTGACTTTTTACCAGGATCGTGTGCCGAAATCGAACAAGACCAGCTGGGTCATTCTTGAGTACTATCTTCCTGGAAATGGAGCTCAAGGAAGAGAGGAGTTGCTATTCCATCAACCTCAGCCTCTGGGTGACTGCTGCTCCTCAGCACTGCAGTCACCGTCATCCCTAGAGCTGGAAGCTGTTCTGCAAACCAATGGCACCAATGATGATTGTAATGTGTTGCAATCACTATTTGGAGATAGTGATTCTTGTCTTCTAGACGGGAATGAAGTTTCAACCTATGATGAAGATGACACTATGTATGATGTGTTTCCACAGCCGCAGGATTACCGCCCCTCCATACTGCAGTCACCAATATACACAAAGCTGGGAAATGTTTCACATCCGCTTCAGCCTGAGCGCAGGATTACCAGCCCTCAATATTGCAGTCACCAAAGTTGGGAAATGTTTCAGATGCCAATCTCTATTTTGGTGAATGCAATGATTGGCAATCTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

227

Amino Acids

25.91

Weight (kDa)

6.89

Isoelectric Point (pI)

67.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 83 4.8e-18 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 380
AciI CCGC 3 cut(s) 503, 514, 569
AclWI GGATC 2 cut(s) 147, 207
AcuI CTGAAG 1 cut(s) 557
AfaI GTAC 2 cut(s) 68, 245
AfiI CCNNNNNNNGG 3 cut(s) 260, 355, 622
AgsI TTSAA 1 cut(s) 459
AjnI CCWGG 2 cut(s) 195, 253
AluBI AGCT 7 cut(s) 78, 161, 228, 266, 355, 362, 550
AluI AGCT 7 cut(s) 78, 161, 228, 266, 355, 362, 550
Alw21I GWGCWC 2 cut(s) 98, 268
AlwI GGATC 2 cut(s) 147, 207
AlwNI CAGNNNCTG 1 cut(s) 307
ApeKI GCWGC 1 cut(s) 318
Asp700I GAANNNNTTC 3 cut(s) 363, 559, 630
AspLEI GCGC 1 cut(s) 585
AsuHPI GGTGA 6 cut(s) 40, 323, 330, 525, 605, 667
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 2 cut(s) 25, 268
BarI GAAGNNNNNNTAC 2 cut(s) 92, 124
BbsI GAAGAC 1 cut(s) 428
Bbv12I GWGCWC 2 cut(s) 98, 268
BbvCI CCTCAGC 2 cut(s) 300, 325
BbvI GCAGC 1 cut(s) 305
BccI CCATC 1 cut(s) 300
BciT130I CCWGG 2 cut(s) 197, 255
BciVI GTATCC 1 cut(s) 101
BfaI CTAG 2 cut(s) 350, 440
BfmI CTRYAG 2 cut(s) 332, 527
BfuI GTATCC 1 cut(s) 101
BisI GCNGC 2 cut(s) 319, 503
BlsI GCNGC 2 cut(s) 320, 504
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 2 cut(s) 197, 255
BmiI GGNNCC 1 cut(s) 382
BmrFI CCNGG 2 cut(s) 197, 255
BmsI GCATC 1 cut(s) 627
BpiI GAAGAC 1 cut(s) 428
Bpu10I CCTNAGC 4 cut(s) 24, 300, 325, 579
BpuEI CTTGAG 2 cut(s) 252, 260
BsaBI GATNNNNATC 1 cut(s) 641
BsaXI ACNNNNNCTCC 4 cut(s) 305, 335, 503, 533
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 355, 622
Bse1I ACTGG 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 669
Bse8I GATNNNNATC 1 cut(s) 641
BseBI CCWGG 2 cut(s) 197, 255
BseGI GGATG 2 cut(s) 344, 565
BseJI GATNNNNATC 1 cut(s) 641
BseLI CCNNNNNNNGG 3 cut(s) 260, 355, 622
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 4 cut(s) 38, 314, 339, 570
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 2 cut(s) 293, 313
BseXI GCAGC 1 cut(s) 305
BseYI CCCAGC 2 cut(s) 228, 550
BshNI GGYRCC 1 cut(s) 380
BsiHKAI GWGCWC 2 cut(s) 98, 268
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 3 cut(s) 260, 355, 622
BsmFI GGGAC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 664
Bsp1286I GDGCHC 3 cut(s) 25, 98, 268
Bsp143I GATC 2 cut(s) 152, 199
BspACI CCGC 3 cut(s) 503, 514, 569
BspCNI CTCAG 4 cut(s) 37, 313, 338, 571
BspLI GGNNCC 1 cut(s) 382
BspMAI CTGCAG 2 cut(s) 336, 531
BspPI GGATC 2 cut(s) 147, 207
BspT107I GGYRCC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 669
BsrI ACTGG 1 cut(s) 116
BssMI GATC 2 cut(s) 152, 199
Bst2UI CCWGG 2 cut(s) 197, 255
Bst4CI ACNGT 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 268
BstDEI CTNAG 4 cut(s) 24, 300, 325, 579
BstF5I GGATG 2 cut(s) 344, 565
BstHHI GCGC 1 cut(s) 585
BstKTI GATC 2 cut(s) 155, 202
BstMBI GATC 2 cut(s) 152, 199
BstNI CCWGG 2 cut(s) 197, 255
BstSCI CCNGG 2 cut(s) 195, 253
BstSFI CTRYAG 2 cut(s) 332, 527
BstV1I GCAGC 1 cut(s) 305
BstV2I GAAGAC 1 cut(s) 428
BsuI GTATCC 1 cut(s) 101
BtsCI GGATG 2 cut(s) 344, 565
BtsI GCAGTG 1 cut(s) 329
BtsIMutI CAGTG 1 cut(s) 329
CaiI CAGNNNCTG 1 cut(s) 307
CfoI GCGC 1 cut(s) 585
Csp6I GTAC 2 cut(s) 67, 244
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviQI GTAC 2 cut(s) 67, 244
DdeI CTNAG 4 cut(s) 24, 300, 325, 579
DpnI GATC 2 cut(s) 154, 201
DpnII GATC 2 cut(s) 152, 199
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Ecl136II GAGCTC 1 cut(s) 266
Eco24I GRGCYC 2 cut(s) 25, 268
Eco53kI GAGCTC 1 cut(s) 266
Eco57I CTGAAG 1 cut(s) 557
EcoICRI GAGCTC 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 195, 253
EcoT38I GRGCYC 2 cut(s) 25, 268
FaiI YATR 5 cut(s) 465, 482, 486, 524, 541
FaqI GGGAC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 319, 503
FokI GGATG 2 cut(s) 331, 552
FriOI GRGCYC 2 cut(s) 25, 268
Fsp4HI GCNGC 2 cut(s) 319, 503
FspBI CTAG 2 cut(s) 350, 440
GlaI GCGC 1 cut(s) 584
GluI GCNGC 2 cut(s) 319, 503
GsaI CCCAGC 2 cut(s) 232, 554
HhaI GCGC 1 cut(s) 585
Hin6I GCGC 1 cut(s) 583
HinP1I GCGC 1 cut(s) 583
HinfI GANTC 1 cut(s) 428
HphI GGTGA 6 cut(s) 40, 323, 330, 525, 605, 667
Hpy188I TCNGA 2 cut(s) 93, 636
Hpy188III TCNNGA 3 cut(s) 26, 239, 440
Hpy99I CGWCG 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4V TGCA 7 cut(s) 334, 370, 406, 529, 609, 662, 679
HpyF3I CTNAG 4 cut(s) 24, 300, 325, 579
HspAI GCGC 1 cut(s) 583
Kzo9I GATC 2 cut(s) 152, 199
LmnI GCTCC 5 cut(s) 93, 130, 171, 263, 326
Lsp1109I GCAGC 1 cut(s) 305
LweI GCATC 1 cut(s) 627
MaeI CTAG 2 cut(s) 350, 440
MaeIII GTNAC 4 cut(s) 311, 336, 531, 611
MalI GATC 2 cut(s) 154, 201
MboI GATC 2 cut(s) 152, 199
MboII GAAGA 7 cut(s) 34, 37, 112, 242, 285, 428, 482
MhlI GDGCHC 3 cut(s) 25, 98, 268
MnlI CCTC 7 cut(s) 171, 271, 309, 315, 334, 529, 609
MroXI GAANNNNTTC 3 cut(s) 363, 559, 630
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 228
MspR9I CCNGG 2 cut(s) 197, 255
Mva1269I GAATGC 1 cut(s) 664
MvaI CCWGG 2 cut(s) 197, 255
NdeII GATC 2 cut(s) 152, 199
NlaIV GGNNCC 1 cut(s) 382
NmuCI GTSAC 4 cut(s) 311, 336, 531, 611
PctI GAATGC 1 cut(s) 664
PdmI GAANNNNTTC 3 cut(s) 363, 559, 630
PfeI GAWTC 1 cut(s) 428
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 2 cut(s) 320, 504
Psp124BI GAGCTC 1 cut(s) 268
Psp6I CCWGG 2 cut(s) 195, 253
PspFI CCCAGC 2 cut(s) 228, 550
PspGI CCWGG 2 cut(s) 195, 253
PspN4I GGNNCC 1 cut(s) 382
PstI CTGCAG 2 cut(s) 336, 531
PstNI CAGNNNCTG 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 228
RsaI GTAC 2 cut(s) 68, 245
RsaNI GTAC 2 cut(s) 67, 244
RseI CAYNNNNRTG 1 cut(s) 53
SacI GAGCTC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 2 cut(s) 319, 503
Sau3AI GATC 2 cut(s) 152, 199
ScaI AGTACT 1 cut(s) 245
ScrFI CCNGG 2 cut(s) 197, 255
SduI GDGCHC 3 cut(s) 25, 98, 268
SetI ASST 9 cut(s) 80, 163, 230, 268, 301, 357, 364, 464, 552
SfaNI GCATC 1 cut(s) 627
SfcI CTRYAG 2 cut(s) 332, 527
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 239, 267
SmoI CTYRAG 2 cut(s) 239, 267
SsiI CCGC 3 cut(s) 503, 514, 569
SspI AATATT 1 cut(s) 605
SspMI CTAG 2 cut(s) 350, 440
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 2 cut(s) 195, 253
TaaI ACNGT 1 cut(s) 342
TaqI TCGA 2 cut(s) 148, 215
TatI WGTACW 2 cut(s) 66, 243
TauI GCSGC 1 cut(s) 505
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 336
TseFI GTSAC 4 cut(s) 311, 336, 531, 611
TseI GCWGC 1 cut(s) 318
Tsp45I GTSAC 4 cut(s) 311, 336, 531, 611
TspDTI ATGAA 2 cut(s) 465, 483
TspRI CASTG 1 cut(s) 336
XbaI TCTAGA 1 cut(s) 439
XmnI GAANNNNTTC 3 cut(s) 363, 559, 630
XspI CTAG 2 cut(s) 350, 440
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.