Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006009.1

Orthogroup ID

OG0001405

Physical Location & Seq

Genomic Coordinates Reverse (-)

23000 .. 23596

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006009.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggccagcacttacccgtttcctcatgatcccctcgttaacctcgccaagatggctgctgtgaaggcacgagatactgcagaagcgtttttcaagcttcaatacttcgagttggcgatcaagcaggctatggtagccaaacaattcgacccggatttgcaagacgtcgatcacttcatcctagcataccagattcataaagcagtgtcagagaagaaagattggtatcatgttcttggcttccaacaggttactgactatgtaaccatcaagaaacaatacaaagaattggcgcgctgtgtgcacccagacaagaatagctctgctgctgcagaaggggctttcaagcatgtcaaagcggcattggactttctctctgactctgccaaaaagaaggcttacgacaagttgttaagtactgcgcggtttcaagggtctaaggtcaagaacactcgcaagagggcttgcccacaggctaacaccagtactactggagatgatcgggatgttttcaagaagactatcaagataatgaggaaaacgaacccaggtcaaaagacatgttgtatgaggatatctgtatgtagggttgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

198

Amino Acids

22.41

Weight (kDa)

9.63

Isoelectric Point (pI)

23.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06750 FvH4_2g04812 FvH4_6g32492 FvH4_7g03441 FvH4_7g03550 FvH4_7g03580 FvH4_7g03920
malus_domestica	MD07G1047000.v1.1
prunus_persica	Prupe.2G041600_v2.0.a1 Prupe.2G041700_v2.0.a1
rosa_laevigata	RLG00000030088 RLG00000030092 RLG00000030093 RLG00000030105
rosa_multiflora	Rmu_co8325403.1_g000001 Rmu_sc0000028.1_g000009 Rmu_sc0002767.1_g000001 Rmu_sc0006009.1_g000006 Rmu_sc0015118.1_g000001 Rmu_sc0024776.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324070 Rroxscaffold_4G00324090 Rroxscaffold_4G00324350
rosa_rugosa	Rorug01G0054500 Rorug01G0054600 Rorug01G0056000 Rorug01G0056100 Rorug01G0057500
rosa_samantha	Rh1AG068900 Rh1AG070000 Rh1AG070500 Rh1AG070800 Rh1AG071100 Rh1AG072700 Rh1AG073600 Rh1AG074400 Rh1BG057700 Rh1BG059200 Rh1BG059300 Rh1BG059900 Rh1CG070600 Rh1CG071800 Rh1CG072600 Rh1DG075300 Rh1DG077200 Rh1DG077500 Rh1DG078400 Rh1DG079600
rosa_wichuraiana	Rw0G003140 Rw0G020740 Rw1G005790 Rw1G005910 Rw1G005970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	168
AccII	CGCG	2 cut(s)	295, 424
AciI	CCGC	2 cut(s)	359, 424
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	2 cut(s)	418, 487
AflIII	ACRYGT	1 cut(s)	560
AgsI	TTSAA	5 cut(s)	94, 101, 346, 431, 514
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	2 cut(s)	97, 321
AluI	AGCT	2 cut(s)	97, 321
Alw21I	GWGCWC	1 cut(s)	306
Alw44I	GTGCAC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	302
ApeKI	GCWGC	3 cut(s)	56, 326, 329
AspLEI	GCGC	3 cut(s)	295, 297, 424
AsuC2I	CCSGG	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	306
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	3 cut(s)	43, 313, 316
BccI	CCATC	2 cut(s)	46, 275
BciT130I	CCWGG	1 cut(s)	549
BcnI	CCSGG	1 cut(s)	152
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	2 cut(s)	78, 330
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	4 cut(s)	57, 327, 330, 360
BlsI	GCNGC	4 cut(s)	58, 328, 331, 361
BmcAI	AGTACT	2 cut(s)	418, 487
Bme1390I	CCNGG	2 cut(s)	152, 549
BmrFI	CCNGG	2 cut(s)	152, 549
BpiI	GAAGAC	1 cut(s)	524
BpmI	CTGGAG	1 cut(s)	513
BpuMI	CCSGG	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	547
Bse1I	ACTGG	2 cut(s)	483, 496
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	547
BseGI	GGATG	2 cut(s)	177, 511
BseJI	GATNNNNATC	1 cut(s)	225
BseNI	ACTGG	2 cut(s)	483, 496
BsePI	GCGCGC	1 cut(s)	293
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	3 cut(s)	43, 313, 316
Bsh1236I	CGCG	2 cut(s)	295, 424
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	152
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	4 cut(s)	28, 117, 169, 499
BspACI	CCGC	2 cut(s)	359, 424
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	2 cut(s)	295, 424
BspHI	TCATGA	1 cut(s)	25
BspMAI	CTGCAG	2 cut(s)	82, 334
BspPI	GGATC	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	483, 496
BssECI	CCNNGG	1 cut(s)	547
BssHII	GCGCGC	1 cut(s)	293
BssMI	GATC	4 cut(s)	28, 117, 169, 499
BssNI	GRCGYC	1 cut(s)	165
BssSI	CACGAG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	549
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	4 cut(s)	7, 126, 295, 466
BstDEI	CTNAG	1 cut(s)	438
BstF5I	GGATG	2 cut(s)	177, 511
BstFNI	CGCG	2 cut(s)	295, 424
BstHHI	GCGC	3 cut(s)	295, 297, 424
BstKTI	GATC	4 cut(s)	31, 120, 172, 502
BstMBI	GATC	4 cut(s)	28, 117, 169, 499
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 65, 134, 301, 338
BstNI	CCWGG	1 cut(s)	549
BstNSI	RCATGY	2 cut(s)	353, 564
BstSCI	CCNGG	2 cut(s)	150, 547
BstSFI	CTRYAG	2 cut(s)	78, 330
BstSLI	GKGCMC	1 cut(s)	306
BstUI	CGCG	2 cut(s)	295, 424
BstV1I	GCAGC	3 cut(s)	43, 313, 316
BstV2I	GAAGAC	1 cut(s)	524
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	177, 511
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	4 cut(s)	7, 126, 295, 466
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	3 cut(s)	295, 297, 424
Csp6I	GTAC	2 cut(s)	417, 486
CviAII	CATG	4 cut(s)	26, 230, 350, 561
CviQI	GTAC	2 cut(s)	417, 486
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	4 cut(s)	30, 119, 171, 501
DpnII	GATC	4 cut(s)	28, 117, 169, 499
EaeI	YGGCCR	1 cut(s)	3
Eco32I	GATATC	1 cut(s)	576
EcoRII	CCWGG	1 cut(s)	547
EcoRV	GATATC	1 cut(s)	576
FaeI	CATG	4 cut(s)	29, 233, 353, 564
FatI	CATG	4 cut(s)	25, 229, 349, 560
Fnu4HI	GCNGC	4 cut(s)	57, 327, 330, 360
FokI	GGATG	2 cut(s)	164, 518
Fsp4HI	GCNGC	4 cut(s)	57, 327, 330, 360
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	3 cut(s)	294, 296, 423
GluI	GCNGC	4 cut(s)	57, 327, 330, 360
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	3 cut(s)	295, 297, 424
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	4 cut(s)	29, 233, 353, 564
Hin6I	GCGC	3 cut(s)	293, 295, 422
HinP1I	GCGC	3 cut(s)	293, 295, 422
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	2 cut(s)	193, 380
HpaI	GTTAAC	1 cut(s)	40
HpaII	CCGG	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	40, 304
Hpy188I	TCNGA	2 cut(s)	211, 379
Hpy188III	TCNNGA	6 cut(s)	26, 271, 445, 503, 514, 526
Hpy8I	GTNNAC	2 cut(s)	40, 304
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	58, 329, 388
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	4 cut(s)	80, 160, 304, 332
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 65, 134, 301, 338
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	1 cut(s)	165
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	4 cut(s)	29, 233, 353, 564
HspAI	GCGC	3 cut(s)	293, 295, 422
KspAI	GTTAAC	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	28, 117, 169, 499
Lsp1109I	GCAGC	3 cut(s)	43, 313, 316
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	250, 262
MalI	GATC	4 cut(s)	30, 119, 171, 501
MboI	GATC	4 cut(s)	28, 117, 169, 499
MboII	GAAGA	2 cut(s)	226, 529
MhlI	GDGCHC	1 cut(s)	306
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	143, 287
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	6 cut(s)	33, 44, 53, 453, 528, 564
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	39, 413
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	152, 549
MvaI	CCWGG	1 cut(s)	549
MvnI	CGCG	2 cut(s)	295, 424
MwoI	GCNNNNNNNGC	5 cut(s)	53, 65, 134, 301, 338
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	4 cut(s)	28, 117, 169, 499
NlaIII	CATG	4 cut(s)	29, 233, 353, 564
NspI	RCATGY	2 cut(s)	353, 564
PagI	TCATGA	1 cut(s)	25
PauI	GCGCGC	1 cut(s)	293
PciI	ACATGT	1 cut(s)	560
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	4 cut(s)	58, 328, 331, 361
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
PscI	ACATGT	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PstI	CTGCAG	2 cut(s)	82, 334
PteI	GCGCGC	1 cut(s)	293
RsaI	GTAC	2 cut(s)	418, 487
RsaNI	GTAC	2 cut(s)	417, 486
SaqAI	TTAA	2 cut(s)	39, 413
SatI	GCNGC	4 cut(s)	57, 327, 330, 360
Sau3AI	GATC	4 cut(s)	28, 117, 169, 499
ScaI	AGTACT	2 cut(s)	418, 487
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	2 cut(s)	152, 549
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	7 cut(s)	45, 99, 168, 252, 323, 444, 553
SfcI	CTRYAG	2 cut(s)	78, 330
Sse9I	AATT	2 cut(s)	143, 287
SsiI	CCGC	2 cut(s)	359, 424
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	2 cut(s)	150, 547
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	3 cut(s)	108, 147, 168
TasI	AATT	2 cut(s)	143, 287
TatI	WGTACW	2 cut(s)	416, 485
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	2 cut(s)	39, 413
Tru9I	TTAA	2 cut(s)	39, 413
TscAI	CASTG	1 cut(s)	210
TseI	GCWGC	3 cut(s)	56, 326, 329
TspDTI	ATGAA	2 cut(s)	166, 185
TspRI	CASTG	1 cut(s)	210
VneI	GTGCAC	1 cut(s)	302
XceI	RCATGY	2 cut(s)	353, 564
XspI	CTAG	1 cut(s)	182
ZraI	GACGTC	1 cut(s)	166
ZrmI	AGTACT	2 cut(s)	418, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.