Rorug01G0056100

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001405
Physical Location & Seq
Forward (+)
9231668 .. 9232174
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0056100.1

Sequence Viewer

Length: 507 bp
ATGGTGAAGTCACAGAGCAGGAAAAGCAGAGAAGAGATCAAAGGGCGTGAACCCAATTTCAGAAGTCTAAAATCTTTAGAAAAATCAACCCATAAGAGTCTCAAGAGGAATGTTGTCGGGGATTATGATGATATTGATCATTTCTTGAATGATTTTCTTGGTAAGGGTCTGGAGATTTTCGAAGAAAGTAAGGGTTTTGATGATTGGTTCAATAACATACCCACAGAATCCTCAATGATAGATGAGATGATTGATTTTATTTGTGTTGATCCTGATGACCATGTTCTCAATAATGGGTCAGGTGCTGTTCTTGGCCAATGTTCTGATATTGATCATTTTCTAAATACCCAAAGTGTGACCTCCGCAGAATTTGAGATATGGTCGCCTACTCCTGACTACTCTGGTTTTGAGGCAGCAGAGTATTTGCTTAATTTCTTGACATCACTTGAGGAGGATGAGAACAATATCAATCCTTCTTTACCAAACCGGGAGGAAAAGCCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

168

Amino Acids

19.17

Weight (kDa)

4.41

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 363
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 1 cut(s) 368
AgsI TTSAA 2 cut(s) 148, 211
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 413
ApoI RAATTY 1 cut(s) 368
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 180
BalI TGGCCA 1 cut(s) 315
BbvI GCAGC 1 cut(s) 425
BclI TGATCA 2 cut(s) 136, 331
BcnI CCSGG 1 cut(s) 488
BcoDI GTCTC 1 cut(s) 104
BisI GCNGC 1 cut(s) 414
BlsI GCNGC 1 cut(s) 415
Bme1390I CCNGG 1 cut(s) 488
BmrFI CCNGG 1 cut(s) 488
BpmI CTGGAG 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 180
BpuEI CTTGAG 2 cut(s) 86, 467
BpuMI CCSGG 1 cut(s) 488
BsaBI GATNNNNATC 2 cut(s) 135, 330
Bse8I GATNNNNATC 2 cut(s) 135, 330
BseGI GGATG 1 cut(s) 460
BseJI GATNNNNATC 2 cut(s) 135, 330
BseRI GAGGAG 1 cut(s) 464
BseXI GCAGC 1 cut(s) 425
BshFI GGCC 1 cut(s) 315
BsiSI CCGG 1 cut(s) 487
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 1 cut(s) 315
Bsp119I TTCGAA 1 cut(s) 180
Bsp143I GATC 4 cut(s) 36, 136, 268, 331
BspACI CCGC 1 cut(s) 363
BspANI GGCC 1 cut(s) 315
BspPI GGATC 1 cut(s) 263
BspT104I TTCGAA 1 cut(s) 180
BssMI GATC 4 cut(s) 36, 136, 268, 331
Bst6I CTCTTC 1 cut(s) 27
BstBI TTCGAA 1 cut(s) 180
BstF5I GGATG 1 cut(s) 460
BstKTI GATC 4 cut(s) 39, 139, 271, 334
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 4 cut(s) 36, 136, 268, 331
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 425
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 460
CaiI CAGNNNCTG 1 cut(s) 305
CviAII CATG 1 cut(s) 281
CviJI RGCY 2 cut(s) 315, 499
CviKI_1 RGCY 2 cut(s) 315, 499
DpnI GATC 4 cut(s) 38, 138, 270, 333
DpnII GATC 4 cut(s) 36, 136, 268, 331
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
FaeI CATG 1 cut(s) 284
FaiI YATR 5 cut(s) 93, 126, 218, 282, 379
FatI CATG 1 cut(s) 280
FbaI TGATCA 2 cut(s) 136, 331
Fnu4HI GCNGC 1 cut(s) 414
FokI GGATG 1 cut(s) 467
Fsp4HI GCNGC 1 cut(s) 414
GluI GCNGC 1 cut(s) 414
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 1 cut(s) 315
HapII CCGG 1 cut(s) 487
Hin1II CATG 1 cut(s) 284
HinfI GANTC 2 cut(s) 97, 227
HpaII CCGG 1 cut(s) 487
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 2 cut(s) 62, 325
Hpy188III TCNNGA 6 cut(s) 103, 145, 170, 272, 392, 436
Hpy8I GTNNAC 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 483
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
Hsp92II CATG 1 cut(s) 284
Ksp22I TGATCA 2 cut(s) 136, 331
Kzo9I GATC 4 cut(s) 36, 136, 268, 331
LpnPI CCDG 7 cut(s) 4, 155, 285, 285, 387, 405, 500
Lsp1109I GCAGC 1 cut(s) 425
MaeIII GTNAC 2 cut(s) 9, 355
MalI GATC 4 cut(s) 38, 138, 270, 333
MboI GATC 4 cut(s) 36, 136, 268, 331
MboII GAAGA 2 cut(s) 44, 194
MlsI TGGCCA 1 cut(s) 315
MluCI AATT 3 cut(s) 55, 368, 430
MluNI TGGCCA 1 cut(s) 315
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 7 cut(s) 99, 241, 370, 403, 442, 445, 484
Mox20I TGGCCA 1 cut(s) 315
MscI TGGCCA 1 cut(s) 315
MseI TTAA 1 cut(s) 429
Msp20I TGGCCA 1 cut(s) 315
MspI CCGG 1 cut(s) 487
MspR9I CCNGG 1 cut(s) 488
MwoI GCNNNNNNNGC 1 cut(s) 24
NciI CCSGG 1 cut(s) 488
NdeII GATC 4 cut(s) 36, 136, 268, 331
NlaIII CATG 1 cut(s) 284
NmuCI GTSAC 2 cut(s) 9, 355
NspV TTCGAA 1 cut(s) 180
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 1 cut(s) 415
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PstNI CAGNNNCTG 1 cut(s) 305
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 1 cut(s) 414
Sau3AI GATC 4 cut(s) 36, 136, 268, 331
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 488
SetI ASST 2 cut(s) 304, 362
SfuI TTCGAA 1 cut(s) 180
SmlI CTYRAG 2 cut(s) 101, 446
SmoI CTYRAG 2 cut(s) 101, 446
Sse9I AATT 3 cut(s) 55, 368, 430
SsiI CCGC 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 486
TaqI TCGA 1 cut(s) 180
TasI AATT 3 cut(s) 55, 368, 430
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TseFI GTSAC 2 cut(s) 9, 355
TseI GCWGC 1 cut(s) 413
Tsp45I GTSAC 2 cut(s) 9, 355
XapI RAATTY 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.