Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001405

Physical Location & Seq

Genomic Coordinates Forward (+)

4572370 .. 4573134

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G041700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTTTCTTCTTTGAATTTCAAGCGCAATAGGATGGCCACTGGCCGCAGCAGAATCCCCAGCAACTCCATCCCTCAAGCTTTGTGTCCCGATCCCATCATCAACCTAGCACAAATGGCTGCGATCAAGGCCCGAGAGGCTGCAGAAGCATACTTCACGCTTCGACATTTCGACCATGCGATCATGCAGGCAAGGGCAGCCAAAGAGTTGTATCAAGAGTTCCCTGGTATGGACAACTACATGGCTGCATACCGAATTCATTCTGACGTATCACACAAGAAAAACTGGTACCATGTTCTTGGCATCCCCAACCCTACTGTTGCCGACTCGGAAGCCATCAAGAAACAATACAAGAGATTGGCACTTGCCTTGCACCCTGACAAGAACGGATCTATTGCTGCCGATGGTGCTTTCAAGTATGTTAAAGCAGCCTGGGATGTTCTCTCCGACCGTGCTAAAAGAGAGGCTTACGACAAGTCTTTAAGTCCGAGGTCTCAAGGGGCTCGTGGTTCCAATAACCGCAAACCAGCGCAGCAGCAGAGGTCCAATGCCTGTTCTCGCAAAAGGGCCGGCCCTGATGCTAATTCTACCGGAGGAGATGGGAGTTTCTACAAGAAAACCATTAAGATTGTAAGAAAATCAAATCCTGGCCAAAGGGCGACTGTTGTGATGTTATCAGTATGCCGGCTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

232

Amino Acids

25.64

Weight (kDa)

10.18

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06750 FvH4_2g04812 FvH4_6g32492 FvH4_7g03441 FvH4_7g03550 FvH4_7g03580 FvH4_7g03920
malus_domestica	MD07G1047000.v1.1
prunus_persica	Prupe.2G041600_v2.0.a1 Prupe.2G041700_v2.0.a1
rosa_laevigata	RLG00000030088 RLG00000030092 RLG00000030093 RLG00000030105
rosa_multiflora	Rmu_co8325403.1_g000001 Rmu_sc0000028.1_g000009 Rmu_sc0002767.1_g000001 Rmu_sc0006009.1_g000006 Rmu_sc0015118.1_g000001 Rmu_sc0024776.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324070 Rroxscaffold_4G00324090 Rroxscaffold_4G00324350
rosa_rugosa	Rorug01G0054500 Rorug01G0054600 Rorug01G0056000 Rorug01G0056100 Rorug01G0057500
rosa_samantha	Rh1AG068900 Rh1AG070000 Rh1AG070500 Rh1AG070800 Rh1AG071100 Rh1AG072700 Rh1AG073600 Rh1AG074400 Rh1BG057700 Rh1BG059200 Rh1BG059300 Rh1BG059900 Rh1CG070600 Rh1CG071800 Rh1CG072600 Rh1DG075300 Rh1DG077200 Rh1DG077500 Rh1DG078400 Rh1DG079600
rosa_wichuraiana	Rw0G003140 Rw0G020740 Rw1G005790 Rw1G005910 Rw1G005970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	288
AciI	CCGC	2 cut(s)	46, 520
AclWI	GGATC	2 cut(s)	86, 397
AcoI	YGGCCR	3 cut(s)	36, 43, 649
AcsI	RAATTY	2 cut(s)	16, 255
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	3 cut(s)	16, 22, 415
AjnI	CCWGG	3 cut(s)	223, 431, 646
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	498
AlwI	GGATC	2 cut(s)	86, 397
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	6 cut(s)	36, 43, 129, 567, 571, 649
ApeKI	GCWGC	9 cut(s)	48, 119, 140, 197, 245, 398, 428, 532, 535
ApoI	RAATTY	2 cut(s)	16, 255
Asp700I	GAANNNNTTC	1 cut(s)	259
Asp718I	GGTACC	1 cut(s)	288
AspLEI	GCGC	2 cut(s)	27, 532
AspS9I	GGNCC	4 cut(s)	130, 543, 567, 572
AvaI	CYCGRG	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	543
BalI	TGGCCA	2 cut(s)	38, 651
BanI	GGYRCC	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	505
BauI	CACGAG	1 cut(s)	504
BbvI	GCAGC	9 cut(s)	60, 106, 127, 209, 232, 385, 440, 544, 547
BccI	CCATC	6 cut(s)	28, 77, 104, 344, 398, 593
BciT130I	CCWGG	3 cut(s)	225, 433, 648
BcoDI	GTCTC	1 cut(s)	498
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	141
BglI	GCCNNNNNGGC	1 cut(s)	137
Bme1390I	CCNGG	3 cut(s)	225, 433, 648
Bme18I	GGWCC	1 cut(s)	543
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	4 cut(s)	130, 543, 567, 572
BmiI	GGNNCC	2 cut(s)	290, 511
BmrFI	CCNGG	3 cut(s)	225, 433, 648
BmsI	GCATC	2 cut(s)	312, 568
BpuEI	CTTGAG	2 cut(s)	60, 480
BsaI	GGTCTC	1 cut(s)	498
BsaJI	CCNNGG	3 cut(s)	223, 432, 488
BsaWI	WCCGGW	1 cut(s)	590
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse118I	RCCGGY	2 cut(s)	569, 684
Bse1I	ACTGG	2 cut(s)	46, 290
BseBI	CCWGG	3 cut(s)	225, 433, 648
BseDI	CCNNGG	3 cut(s)	223, 432, 488
BseGI	GGATG	4 cut(s)	39, 69, 303, 442
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseNI	ACTGG	2 cut(s)	46, 290
BseRI	GAGGAG	1 cut(s)	609
BseXI	GCAGC	9 cut(s)	60, 106, 127, 209, 232, 385, 440, 544, 547
BseYI	CCCAGC	1 cut(s)	59
Bsh1285I	CGRYCG	1 cut(s)	451
BshFI	GGCC	6 cut(s)	38, 45, 131, 569, 573, 651
BshNI	GGYRCC	1 cut(s)	288
BsiEI	CGRYCG	1 cut(s)	451
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	3 cut(s)	570, 591, 685
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	498
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	6 cut(s)	38, 45, 131, 569, 573, 651
Bso31I	GGTCTC	1 cut(s)	498
BsoBI	CYCGRG	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp143I	GATC	4 cut(s)	91, 123, 180, 389
BspACI	CCGC	2 cut(s)	46, 520
BspANI	GGCC	6 cut(s)	38, 45, 131, 569, 573, 651
BspLI	GGNNCC	2 cut(s)	290, 511
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	2 cut(s)	86, 397
BspT107I	GGYRCC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	498
BsrFI	RCCGGY	2 cut(s)	569, 684
BsrI	ACTGG	2 cut(s)	46, 290
BssAI	RCCGGY	2 cut(s)	569, 684
BssECI	CCNNGG	3 cut(s)	223, 432, 488
BssMI	GATC	4 cut(s)	91, 123, 180, 389
BssSI	CACGAG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	3 cut(s)	225, 433, 648
Bst4CI	ACNGT	3 cut(s)	319, 452, 664
BstC8I	GCNNGC	4 cut(s)	189, 571, 686, 690
BstF5I	GGATG	4 cut(s)	39, 69, 303, 442
BstHHI	GCGC	2 cut(s)	27, 532
BstKTI	GATC	4 cut(s)	94, 126, 183, 392
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	4 cut(s)	91, 123, 180, 389
BstMCI	CGRYCG	1 cut(s)	451
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 128, 137, 146, 197, 407
BstNI	CCWGG	3 cut(s)	225, 433, 648
BstSCI	CCNGG	3 cut(s)	223, 431, 646
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	9 cut(s)	60, 106, 127, 209, 232, 385, 440, 544, 547
BstX2I	RGATCY	1 cut(s)	389
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	389
BsuRI	GGCC	6 cut(s)	38, 45, 131, 569, 573, 651
BtsCI	GGATG	4 cut(s)	39, 69, 303, 442
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	4 cut(s)	189, 571, 686, 690
CfoI	GCGC	2 cut(s)	27, 532
Cfr10I	RCCGGY	2 cut(s)	569, 684
Cfr13I	GGNCC	4 cut(s)	130, 543, 567, 572
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	4 cut(s)	176, 184, 241, 293
CviQI	GTAC	1 cut(s)	289
DpnI	GATC	4 cut(s)	93, 125, 182, 391
DpnII	GATC	4 cut(s)	91, 123, 180, 389
EaeI	YGGCCR	3 cut(s)	36, 43, 649
Eco24I	GRGCYC	1 cut(s)	505
Eco31I	GGTCTC	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	255
EcoRII	CCWGG	3 cut(s)	223, 431, 646
EcoT38I	GRGCYC	1 cut(s)	505
FaeI	CATG	4 cut(s)	179, 187, 244, 296
FaiI	YATR	9 cut(s)	151, 177, 185, 230, 242, 250, 294, 420, 682
FalI	AAGNNNNNCTT	2 cut(s)	451, 483
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	4 cut(s)	175, 183, 240, 292
FokI	GGATG	4 cut(s)	46, 56, 290, 449
FriOI	GRGCYC	1 cut(s)	505
FseI	GGCCGGCC	1 cut(s)	573
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	2 cut(s)	26, 531
GsaI	CCCAGC	1 cut(s)	63
HaeIII	GGCC	6 cut(s)	38, 45, 131, 569, 573, 651
HapII	CCGG	3 cut(s)	570, 591, 685
HhaI	GCGC	2 cut(s)	27, 532
Hin1II	CATG	4 cut(s)	179, 187, 244, 296
Hin6I	GCGC	2 cut(s)	25, 530
HinP1I	GCGC	2 cut(s)	25, 530
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	2 cut(s)	54, 326
HpaII	CCGG	3 cut(s)	570, 591, 685
Hpy188I	TCNGA	4 cut(s)	265, 331, 448, 489
Hpy188III	TCNNGA	3 cut(s)	89, 215, 340
HpyCH4III	ACNGT	3 cut(s)	319, 452, 664
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	4 cut(s)	143, 187, 248, 373
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 128, 137, 146, 197, 407
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	179, 187, 244, 296
HspAI	GCGC	2 cut(s)	25, 530
KpnI	GGTACC	1 cut(s)	292
KroI	GCCGGC	2 cut(s)	569, 684
KroNI	GCCGGC	2 cut(s)	571, 686
Kzo9I	GATC	4 cut(s)	91, 123, 180, 389
Lsp1109I	GCAGC	9 cut(s)	60, 106, 127, 209, 232, 385, 440, 544, 547
LweI	GCATC	2 cut(s)	312, 568
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	267
MalI	GATC	4 cut(s)	93, 125, 182, 391
MboI	GATC	4 cut(s)	91, 123, 180, 389
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	505
MlsI	TGGCCA	2 cut(s)	38, 651
MluCI	AATT	3 cut(s)	16, 255, 583
MluNI	TGGCCA	2 cut(s)	38, 651
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	6 cut(s)	84, 130, 457, 483, 534, 587
Mox20I	TGGCCA	2 cut(s)	38, 651
MroNI	GCCGGC	2 cut(s)	569, 684
MroXI	GAANNNNTTC	1 cut(s)	259
MscI	TGGCCA	2 cut(s)	38, 651
MseI	TTAA	4 cut(s)	423, 482, 624, 694
Msp20I	TGGCCA	2 cut(s)	38, 651
MspI	CCGG	3 cut(s)	570, 591, 685
MspR9I	CCNGG	3 cut(s)	225, 433, 648
MvaI	CCWGG	3 cut(s)	225, 433, 648
MwoI	GCNNNNNNNGC	6 cut(s)	116, 128, 137, 146, 197, 407
NaeI	GCCGGC	2 cut(s)	571, 686
NdeII	GATC	4 cut(s)	91, 123, 180, 389
NgoMIV	GCCGGC	2 cut(s)	569, 684
NlaIII	CATG	4 cut(s)	179, 187, 244, 296
NlaIV	GGNNCC	2 cut(s)	290, 511
PdiI	GCCGGC	2 cut(s)	571, 686
PdmI	GAANNNNTTC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
Psp6I	CCWGG	3 cut(s)	223, 431, 646
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	3 cut(s)	223, 431, 646
PspN4I	GGNNCC	2 cut(s)	290, 511
PspPI	GGNCC	4 cut(s)	130, 543, 567, 572
PsrI	GAACNNNNNNTAC	2 cut(s)	203, 235
PstI	CTGCAG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	389
RigI	GGCCGGCC	1 cut(s)	573
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SaqAI	TTAA	4 cut(s)	423, 482, 624, 694
Sau3AI	GATC	4 cut(s)	91, 123, 180, 389
Sau96I	GGNCC	4 cut(s)	130, 543, 567, 572
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	3 cut(s)	225, 433, 648
SduI	GDGCHC	1 cut(s)	505
SetI	ASST	5 cut(s)	82, 108, 270, 494, 545
SfaNI	GCATC	2 cut(s)	312, 568
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	543
SmlI	CTYRAG	2 cut(s)	75, 495
SmoI	CTYRAG	2 cut(s)	75, 495
Sse9I	AATT	3 cut(s)	16, 255, 583
SsiI	CCGC	2 cut(s)	46, 520
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	3 cut(s)	223, 431, 646
TaaI	ACNGT	3 cut(s)	319, 452, 664
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	163, 171
TasI	AATT	3 cut(s)	16, 255, 583
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	4 cut(s)	423, 482, 624, 694
Tru9I	TTAA	4 cut(s)	423, 482, 624, 694
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	9 cut(s)	48, 119, 140, 197, 245, 398, 428, 532, 535
TspDTI	ATGAA	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	543
XapI	RAATTY	2 cut(s)	16, 255
XmnI	GAANNNNTTC	1 cut(s)	259
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.