Rh1DG078400

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001405
Physical Location & Seq
Forward (+)
14392606 .. 14393019
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG078400.1

Sequence Viewer

Length: 414 bp
ATGGCCAGCTTGTACTCCTTTCCTCATGATCCCCTTGTCAACGTCACCATAATGGCTGCTGTCAAGGCAAAAGATACTGCAGAAGAATTTTTCAAGCTTCCAAACTACGATTTGGCGATCAAGCAGGCCATGGTAGCCAAACAATTCGACCCCGATTTGCAAGGTATCGATCATTTCGTCCTTGCCTACCAGATTCATAAAGCCGTGTCGGAAAAGAAAGATTGGTATCATGTTCTTGGCTTCCAAGAGGTTACTGAGTATGCGACCATCAAGAAACAATACAAAGAATTGGCACGCTTTGTACACCCTGACAAGAATAGCTCTATTGCTGCCGAAGGCGCTTTCAACCATGTCAAAGTGGCGTGGGATTTCTTTCTGGCCCTACCAAAAAGAAGGCCTACGACAAGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

137

Amino Acids

15.71

Weight (kDa)

7.95

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 74 - 126 1.9e-11 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 2 cut(s) 14, 303
AgsI TTSAA 2 cut(s) 94, 346
AluBI AGCT 3 cut(s) 9, 97, 321
AluI AGCT 3 cut(s) 9, 97, 321
AlwI GGATC 1 cut(s) 23
AoxI GGCC 4 cut(s) 3, 126, 378, 395
ApeKI GCWGC 2 cut(s) 56, 329
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 379
AsuHPI GGTGA 1 cut(s) 37
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 2 cut(s) 43, 316
BccI CCATC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 78
BfoI RGCGCY 1 cut(s) 342
BisI GCNGC 2 cut(s) 57, 330
BlsI GCNGC 2 cut(s) 58, 331
BmgT120I GGNCC 1 cut(s) 379
Bsa29I ATCGAT 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 225
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 129
BseJI GATNNNNATC 1 cut(s) 225
BseMII CTCAG 1 cut(s) 246
BseXI GCAGC 2 cut(s) 43, 316
BshFI GGCC 4 cut(s) 5, 128, 380, 397
BshVI ATCGAT 1 cut(s) 168
BsnI GGCC 4 cut(s) 5, 128, 380, 397
Bsp1407I TGTACA 1 cut(s) 301
Bsp143I GATC 3 cut(s) 28, 117, 169
Bsp19I CCATGG 1 cut(s) 129
BspANI GGCC 4 cut(s) 5, 128, 380, 397
BspCNI CTCAG 1 cut(s) 247
BspDI ATCGAT 1 cut(s) 168
BspHI TCATGA 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 82
BspPI GGATC 1 cut(s) 23
BsrGI TGTACA 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 3 cut(s) 28, 117, 169
BssT1I CCWWGG 1 cut(s) 129
BstAUI TGTACA 1 cut(s) 301
BstC8I GCNNGC 3 cut(s) 7, 126, 295
BstDEI CTNAG 1 cut(s) 255
BstDSI CCRYGG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 3 cut(s) 31, 120, 172
BstMBI GATC 3 cut(s) 28, 117, 169
BstMWI GCNNNNNNNGC 3 cut(s) 65, 134, 338
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 43, 316
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 4 cut(s) 5, 128, 380, 397
BsuTUI ATCGAT 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 129
Cac8I GCNNGC 3 cut(s) 7, 126, 295
CciI TCATGA 1 cut(s) 25
CfoI GCGC 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 379
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 2 cut(s) 13, 302
CviAII CATG 4 cut(s) 26, 130, 230, 350
CviQI GTAC 2 cut(s) 13, 302
DdeI CTNAG 1 cut(s) 255
DpnI GATC 3 cut(s) 30, 119, 171
DpnII GATC 3 cut(s) 28, 117, 169
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 129
Eco147I AGGCCT 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 4 cut(s) 29, 133, 233, 353
FaiI YATR 7 cut(s) 27, 50, 131, 198, 231, 261, 351
FatI CATG 4 cut(s) 25, 129, 229, 349
Fnu4HI GCNGC 2 cut(s) 57, 330
Fsp4HI GCNGC 2 cut(s) 57, 330
GlaI GCGC 1 cut(s) 340
GluI GCNGC 2 cut(s) 57, 330
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 4 cut(s) 5, 128, 380, 397
HhaI GCGC 1 cut(s) 341
Hin1II CATG 4 cut(s) 29, 133, 233, 353
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 1 cut(s) 193
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 2 cut(s) 40, 304
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 26, 271
Hpy8I GTNNAC 2 cut(s) 40, 304
HpyAV CCTTC 2 cut(s) 329, 387
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 2 cut(s) 80, 160
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 134, 338
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 4 cut(s) 29, 133, 233, 353
HspAI GCGC 1 cut(s) 339
Kzo9I GATC 3 cut(s) 28, 117, 169
LpnPI CCDG 5 cut(s) 19, 110, 203, 321, 362
Lsp1109I GCAGC 2 cut(s) 43, 316
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 2 cut(s) 43, 250
MalI GATC 3 cut(s) 30, 119, 171
MboI GATC 3 cut(s) 28, 117, 169
MboII GAAGA 1 cut(s) 95
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 86, 143, 287
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 2 cut(s) 33, 241
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 412
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 3 cut(s) 65, 134, 338
NcoI CCATGG 1 cut(s) 129
NdeII GATC 3 cut(s) 28, 117, 169
NlaIII CATG 4 cut(s) 29, 133, 233, 353
NmuCI GTSAC 1 cut(s) 43
PagI TCATGA 1 cut(s) 25
PceI AGGCCT 1 cut(s) 397
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 2 cut(s) 58, 331
PspPI GGNCC 1 cut(s) 379
PstI CTGCAG 1 cut(s) 82
RsaI GTAC 2 cut(s) 14, 303
RsaNI GTAC 2 cut(s) 13, 302
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 1 cut(s) 412
SatI GCNGC 2 cut(s) 57, 330
Sau3AI GATC 3 cut(s) 28, 117, 169
Sau96I GGNCC 1 cut(s) 379
SetI ASST 6 cut(s) 11, 45, 99, 166, 252, 323
SfcI CTRYAG 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 3 cut(s) 86, 143, 287
SseBI AGGCCT 1 cut(s) 397
StuI AGGCCT 1 cut(s) 397
StyI CCWWGG 1 cut(s) 129
TaiI ACGT 1 cut(s) 45
TaqI TCGA 2 cut(s) 147, 168
TasI AATT 3 cut(s) 86, 143, 287
TatI WGTACW 2 cut(s) 12, 301
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 412
Tru9I TTAA 1 cut(s) 412
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 2 cut(s) 56, 329
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 185
XapI RAATTY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.